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misnomer001

BarcinC=N + Caucasus_eneo pass

misnomer001
Aug 28th, 2022
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  1. qpAdm: parameter file: parqpa2
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. S1: southmerged1
  5. indivname: southmerged1.ind
  6. snpname: southmerged1.snp
  7. genotypename: southmerged1.geno
  8. popleft: left
  9. popright: right
  10. details: YES
  11. allsnps: YES
  12. inbreed: NO
  13. oldallsnps: NO
  14. ## qpAdm version: 1520
  15. seed: 1781983531
  16. inbreed set NO
  17. inbreed set NO
  18. tmp: /tmp/fsx.5294
  19.  
  20. left pops:
  21. Turkey_C
  22. Turkey_N
  23. Russia_Caucasus_Eneolithic
  24.  
  25. right pops:
  26. Mbuti.DG
  27. Turkey_Boncuklu_N
  28. EHG
  29. IRQ_PPN
  30. ARM_Masis_Blur_N
  31. Iran_GanjDareh_N
  32. CHG
  33. ONG.SG
  34. Tarim_EMBA1
  35. Serbia_IronGates_Mesolithic
  36. Russia_Samara_EBA_Yamnaya
  37. Turkey_Arslantepe_LateC
  38. Bulgaria_EBA_Yamnaya_o
  39. Armenia_EBA_KuraAraxes
  40.  
  41. codimension 1
  42. f4info:
  43. f4rank: 1 dof: 12 chisq: 17.952 tail: 0.117146275 dofdiff: 14 chisqdiff: -17.952 taildiff: 1
  44. B:
  45. scale 1.000
  46. Turkey_Boncuklu_N -2.219
  47. EHG 0.363
  48. IRQ_PPN 0.021
  49. ARM_Masis_Blur_N -0.930
  50. Iran_GanjDareh_N 1.025
  51. CHG 2.024
  52. ONG.SG 0.008
  53. Tarim_EMBA1 0.863
  54. Serbia_IronGates_Mesolithic -0.652
  55. Russia_Samara_EBA_Yamnaya 0.420
  56. Turkey_Arslantepe_LateC -0.677
  57. Bulgaria_EBA_Yamnaya_o -0.324
  58. Armenia_EBA_KuraAraxes 0.150
  59. A:
  60. scale 195.073
  61. Turkey_N -0.961
  62. Russia_Caucasus_Eneolithic 1.037
  63.  
  64.  
  65. full rank
  66. f4info:
  67. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 17.952 taildiff: 0.117146275
  68. B:
  69. scale 199.795 170.951
  70. Turkey_Boncuklu_N 2.295 -1.860
  71. EHG -0.703 -0.061
  72. IRQ_PPN 0.250 0.373
  73. ARM_Masis_Blur_N 0.373 -1.503
  74. Iran_GanjDareh_N -0.981 0.927
  75. CHG -1.722 2.280
  76. ONG.SG 0.019 0.019
  77. Tarim_EMBA1 -1.377 0.133
  78. Serbia_IronGates_Mesolithic 0.460 -0.780
  79. Russia_Samara_EBA_Yamnaya -0.664 0.066
  80. Turkey_Arslantepe_LateC 0.689 -0.591
  81. Bulgaria_EBA_Yamnaya_o 0.251 -0.311
  82. Armenia_EBA_KuraAraxes -0.153 0.073
  83. A:
  84. scale 1.414 1.414
  85. Turkey_N 1.414 0.000
  86. Russia_Caucasus_Eneolithic 0.000 1.414
  87.  
  88.  
  89. best coefficients: 0.519 0.481
  90. totmean: 0.519 0.481
  91. boot mean: 0.519 0.481
  92. std. errors: 0.034 0.034
  93.  
  94. error covariance (* 1,000,000)
  95. 1155 -1155
  96. -1155 1155
  97.  
  98.  
  99. summ: Turkey_C 2 0.117146 0.519 0.481 1155 -1155 1155
  100.  
  101. fixed pat wt dof chisq tail prob
  102. 00 0 12 17.952 0.117146 0.519 0.481
  103. 01 1 13 274.380 0 1.000 0.000
  104. 10 1 13 166.209 1.08721e-28 0.000 1.000
  105. best pat: 00 0.117146 - -
  106. best pat: 10 1.08721e-28 chi(nested): 148.256 p-value for nested model: 4.16963e-34
  107.  
  108. coeffs: 0.519 0.481
  109.  
  110. ## dscore:: f_4(Base, Fit, Rbase, right2)
  111. ## genstat:: f_4(Base, Fit, right1, right2)
  112.  
  113. details: Turkey_N Turkey_Boncuklu_N 0.011486 8.829324
  114. details: Russia_Caucasus_Eneolithic Turkey_Boncuklu_N -0.010878 -5.968576
  115. dscore: Turkey_Boncuklu_N f4: 0.000729 Z: 0.516130
  116.  
  117. details: Turkey_N EHG -0.003517 -2.543936
  118. details: Russia_Caucasus_Eneolithic EHG -0.000359 -0.185443
  119. dscore: EHG f4: -0.001998 Z: -1.339316
  120.  
  121. details: Turkey_N IRQ_PPN 0.001252 0.838579
  122. details: Russia_Caucasus_Eneolithic IRQ_PPN 0.002182 1.022627
  123. dscore: IRQ_PPN f4: 0.001699 Z: 1.047018
  124.  
  125. details: Turkey_N ARM_Masis_Blur_N 0.001865 0.970248
  126. details: Russia_Caucasus_Eneolithic ARM_Masis_Blur_N -0.008790 -3.214657
  127. dscore: ARM_Masis_Blur_N f4: -0.003260 Z: -1.572930
  128.  
  129. details: Turkey_N Iran_GanjDareh_N -0.004912 -4.301446
  130. details: Russia_Caucasus_Eneolithic Iran_GanjDareh_N 0.005423 3.422327
  131. dscore: Iran_GanjDareh_N f4: 0.000060 Z: 0.049311
  132.  
  133. details: Turkey_N CHG -0.008618 -6.797870
  134. details: Russia_Caucasus_Eneolithic CHG 0.013337 6.948273
  135. dscore: CHG f4: 0.001942 Z: 1.381110
  136.  
  137. details: Turkey_N ONG.SG 0.000096 0.079751
  138. details: Russia_Caucasus_Eneolithic ONG.SG 0.000111 0.063448
  139. dscore: ONG.SG f4: 0.000103 Z: 0.077377
  140.  
  141. details: Turkey_N Tarim_EMBA1 -0.006892 -4.926928
  142. details: Russia_Caucasus_Eneolithic Tarim_EMBA1 0.000779 0.396367
  143. dscore: Tarim_EMBA1 f4: -0.003202 Z: -2.113507
  144.  
  145. details: Turkey_N Serbia_IronGates_Mesolithic 0.002300 1.912740
  146. details: Russia_Caucasus_Eneolithic Serbia_IronGates_Mesolithic -0.004565 -2.703024
  147. dscore: Serbia_IronGates_Mesolithic f4: -0.001002 Z: -0.771998
  148.  
  149. details: Turkey_N Russia_Samara_EBA_Yamnaya -0.003323 -3.088482
  150. details: Russia_Caucasus_Eneolithic Russia_Samara_EBA_Yamnaya 0.000387 0.255077
  151. dscore: Russia_Samara_EBA_Yamnaya f4: -0.001539 Z: -1.316742
  152.  
  153. details: Turkey_N Turkey_Arslantepe_LateC 0.003450 3.486562
  154. details: Russia_Caucasus_Eneolithic Turkey_Arslantepe_LateC -0.003458 -2.480972
  155. dscore: Turkey_Arslantepe_LateC f4: 0.000127 Z: 0.119194
  156.  
  157. details: Turkey_N Bulgaria_EBA_Yamnaya_o 0.001256 0.699821
  158. details: Russia_Caucasus_Eneolithic Bulgaria_EBA_Yamnaya_o -0.001820 -0.720327
  159. dscore: Bulgaria_EBA_Yamnaya_o f4: -0.000224 Z: -0.114918
  160.  
  161. details: Turkey_N Armenia_EBA_KuraAraxes -0.000766 -0.591343
  162. details: Russia_Caucasus_Eneolithic Armenia_EBA_KuraAraxes 0.000425 0.224960
  163. dscore: Armenia_EBA_KuraAraxes f4: -0.000193 Z: -0.135738
  164.  
  165. gendstat: Mbuti.DG Turkey_Boncuklu_N 0.516
  166. gendstat: Mbuti.DG EHG -1.339
  167. gendstat: Mbuti.DG IRQ_PPN 1.047
  168. gendstat: Mbuti.DG ARM_Masis_Blur_N -1.573
  169. gendstat: Mbuti.DG Iran_GanjDareh_N 0.049
  170. gendstat: Mbuti.DG CHG 1.381
  171. gendstat: Mbuti.DG ONG.SG 0.077
  172. gendstat: Mbuti.DG Tarim_EMBA1 -2.114
  173. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic -0.772
  174. gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya -1.317
  175. gendstat: Mbuti.DG Turkey_Arslantepe_LateC 0.119
  176. gendstat: Mbuti.DG Bulgaria_EBA_Yamnaya_o -0.115
  177. gendstat: Mbuti.DG Armenia_EBA_KuraAraxes -0.136
  178. gendstat: Turkey_Boncuklu_N EHG -1.783
  179. gendstat: Turkey_Boncuklu_N IRQ_PPN 0.581
  180. gendstat: Turkey_Boncuklu_N ARM_Masis_Blur_N -1.943
  181. gendstat: Turkey_Boncuklu_N Iran_GanjDareh_N -0.471
  182. gendstat: Turkey_Boncuklu_N CHG 0.759
  183. gendstat: Turkey_Boncuklu_N ONG.SG -0.414
  184. gendstat: Turkey_Boncuklu_N Tarim_EMBA1 -2.390
  185. gendstat: Turkey_Boncuklu_N Serbia_IronGates_Mesolithic -1.419
  186. gendstat: Turkey_Boncuklu_N Russia_Samara_EBA_Yamnaya -1.866
  187. gendstat: Turkey_Boncuklu_N Turkey_Arslantepe_LateC -0.606
  188. gendstat: Turkey_Boncuklu_N Bulgaria_EBA_Yamnaya_o -0.497
  189. gendstat: Turkey_Boncuklu_N Armenia_EBA_KuraAraxes -0.615
  190. gendstat: EHG IRQ_PPN 2.119
  191. gendstat: EHG ARM_Masis_Blur_N -0.589
  192. gendstat: EHG Iran_GanjDareh_N 1.457
  193. gendstat: EHG CHG 2.418
  194. gendstat: EHG ONG.SG 1.340
  195. gendstat: EHG Tarim_EMBA1 -0.965
  196. gendstat: EHG Serbia_IronGates_Mesolithic 0.897
  197. gendstat: EHG Russia_Samara_EBA_Yamnaya 0.414
  198. gendstat: EHG Turkey_Arslantepe_LateC 1.707
  199. gendstat: EHG Bulgaria_EBA_Yamnaya_o 0.915
  200. gendstat: EHG Armenia_EBA_KuraAraxes 1.116
  201. gendstat: IRQ_PPN ARM_Masis_Blur_N -2.209
  202. gendstat: IRQ_PPN Iran_GanjDareh_N -1.049
  203. gendstat: IRQ_PPN CHG 0.141
  204. gendstat: IRQ_PPN ONG.SG -0.945
  205. gendstat: IRQ_PPN Tarim_EMBA1 -2.723
  206. gendstat: IRQ_PPN Serbia_IronGates_Mesolithic -1.730
  207. gendstat: IRQ_PPN Russia_Samara_EBA_Yamnaya -2.199
  208. gendstat: IRQ_PPN Turkey_Arslantepe_LateC -1.148
  209. gendstat: IRQ_PPN Bulgaria_EBA_Yamnaya_o -0.902
  210. gendstat: IRQ_PPN Armenia_EBA_KuraAraxes -1.143
  211. gendstat: ARM_Masis_Blur_N Iran_GanjDareh_N 1.634
  212. gendstat: ARM_Masis_Blur_N CHG 2.446
  213. gendstat: ARM_Masis_Blur_N ONG.SG 1.558
  214. gendstat: ARM_Masis_Blur_N Tarim_EMBA1 0.026
  215. gendstat: ARM_Masis_Blur_N Serbia_IronGates_Mesolithic 1.138
  216. gendstat: ARM_Masis_Blur_N Russia_Samara_EBA_Yamnaya 0.887
  217. gendstat: ARM_Masis_Blur_N Turkey_Arslantepe_LateC 1.825
  218. gendstat: ARM_Masis_Blur_N Bulgaria_EBA_Yamnaya_o 1.240
  219. gendstat: ARM_Masis_Blur_N Armenia_EBA_KuraAraxes 1.478
  220. gendstat: Iran_GanjDareh_N CHG 1.394
  221. gendstat: Iran_GanjDareh_N ONG.SG 0.032
  222. gendstat: Iran_GanjDareh_N Tarim_EMBA1 -2.264
  223. gendstat: Iran_GanjDareh_N Serbia_IronGates_Mesolithic -0.847
  224. gendstat: Iran_GanjDareh_N Russia_Samara_EBA_Yamnaya -1.510
  225. gendstat: Iran_GanjDareh_N Turkey_Arslantepe_LateC 0.068
  226. gendstat: Iran_GanjDareh_N Bulgaria_EBA_Yamnaya_o -0.150
  227. gendstat: Iran_GanjDareh_N Armenia_EBA_KuraAraxes -0.191
  228. gendstat: CHG ONG.SG -1.159
  229. gendstat: CHG Tarim_EMBA1 -3.039
  230. gendstat: CHG Serbia_IronGates_Mesolithic -2.084
  231. gendstat: CHG Russia_Samara_EBA_Yamnaya -2.700
  232. gendstat: CHG Turkey_Arslantepe_LateC -1.404
  233. gendstat: CHG Bulgaria_EBA_Yamnaya_o -1.079
  234. gendstat: CHG Armenia_EBA_KuraAraxes -1.391
  235. gendstat: ONG.SG Tarim_EMBA1 -2.242
  236. gendstat: ONG.SG Serbia_IronGates_Mesolithic -0.817
  237. gendstat: ONG.SG Russia_Samara_EBA_Yamnaya -1.283
  238. gendstat: ONG.SG Turkey_Arslantepe_LateC 0.020
  239. gendstat: ONG.SG Bulgaria_EBA_Yamnaya_o -0.164
  240. gendstat: ONG.SG Armenia_EBA_KuraAraxes -0.191
  241. gendstat: Tarim_EMBA1 Serbia_IronGates_Mesolithic 1.666
  242. gendstat: Tarim_EMBA1 Russia_Samara_EBA_Yamnaya 1.446
  243. gendstat: Tarim_EMBA1 Turkey_Arslantepe_LateC 2.487
  244. gendstat: Tarim_EMBA1 Bulgaria_EBA_Yamnaya_o 1.461
  245. gendstat: Tarim_EMBA1 Armenia_EBA_KuraAraxes 1.842
  246. gendstat: Serbia_IronGates_Mesolithic Russia_Samara_EBA_Yamnaya -0.629
  247. gendstat: Serbia_IronGates_Mesolithic Turkey_Arslantepe_LateC 1.215
  248. gendstat: Serbia_IronGates_Mesolithic Bulgaria_EBA_Yamnaya_o 0.445
  249. gendstat: Serbia_IronGates_Mesolithic Armenia_EBA_KuraAraxes 0.589
  250. gendstat: Russia_Samara_EBA_Yamnaya Turkey_Arslantepe_LateC 1.987
  251. gendstat: Russia_Samara_EBA_Yamnaya Bulgaria_EBA_Yamnaya_o 0.780
  252. gendstat: Russia_Samara_EBA_Yamnaya Armenia_EBA_KuraAraxes 1.074
  253. gendstat: Turkey_Arslantepe_LateC Bulgaria_EBA_Yamnaya_o -0.204
  254. gendstat: Turkey_Arslantepe_LateC Armenia_EBA_KuraAraxes -0.280
  255. gendstat: Bulgaria_EBA_Yamnaya_o Armenia_EBA_KuraAraxes 0.016
  256.  
  257. removing /tmp/fsx.5294
  258. ##end of qpAdm: 2.775 seconds cpu 0.782 Mbytes in use
  259.  
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