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misnomer001
May 23rd, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1633429386
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Turkmenistan_C_TepeAnau
  11. Iran_GanjDareh_N
  12. Georgia_Kotias.SG
  13. WSHG
  14. Anatolia_N
  15.  
  16. right pops:
  17. Mbuti.DG
  18. Russia_Ust_Ishim.DG
  19. Russia_Kostenki14.SG
  20. Russia_MA1_HG.SG
  21. Han.DG
  22. ONG.SG
  23. Papuan.DG
  24. Italy_North_Villabruna_HG
  25. Czech_Vestonice16
  26. Iberia_ElMiron
  27. Ethiopia_4500BP_published.SG
  28. Karitiana.DG
  29. Israel_Natufian
  30. Georgia_Satsurblia.SG
  31.  
  32. 0 Turkmenistan_C_TepeAnau 3
  33. 1 Iran_GanjDareh_N 8
  34. 2 Georgia_Kotias.SG 1
  35. 3 WSHG 3
  36. 4 Anatolia_N 22
  37. 5 Mbuti.DG 4
  38. 6 Russia_Ust_Ishim.DG 1
  39. 7 Russia_Kostenki14.SG 1
  40. 8 Russia_MA1_HG.SG 1
  41. 9 Han.DG 3
  42. 10 ONG.SG 6
  43. 11 Papuan.DG 15
  44. 12 Italy_North_Villabruna_HG 1
  45. 13 Czech_Vestonice16 1
  46. 14 Iberia_ElMiron 1
  47. 15 Ethiopia_4500BP_published.SG 1
  48. 16 Karitiana.DG 3
  49. 17 Israel_Natufian 6
  50. 18 Georgia_Satsurblia.SG 1
  51. jackknife block size: 0.050
  52. snps: 1150509 indivs: 82
  53. number of blocks for block jackknife: 713
  54. ## ncols: 1150509
  55. coverage: Turkmenistan_C_TepeAnau 930778
  56. coverage: Iran_GanjDareh_N 1057358
  57. coverage: Georgia_Kotias.SG 1149097
  58. coverage: WSHG 858019
  59. coverage: Anatolia_N 1139031
  60. coverage: Mbuti.DG 1121438
  61. coverage: Russia_Ust_Ishim.DG 1062044
  62. coverage: Russia_Kostenki14.SG 1048972
  63. coverage: Russia_MA1_HG.SG 805960
  64. coverage: Han.DG 1121416
  65. coverage: ONG.SG 1143397
  66. coverage: Papuan.DG 1121459
  67. coverage: Italy_North_Villabruna_HG 883779
  68. coverage: Czech_Vestonice16 732091
  69. coverage: Iberia_ElMiron 626974
  70. coverage: Ethiopia_4500BP_published.SG 1149598
  71. coverage: Karitiana.DG 1121394
  72. coverage: Israel_Natufian 535079
  73. coverage: Georgia_Satsurblia.SG 801311
  74. dof (jackknife): 619.644
  75. numsnps used: 1150509
  76. codimension 1
  77. f4info:
  78. f4rank: 3 dof: 10 chisq: 16.643 tail: 0.0826550691 dofdiff: 12 chisqdiff: -16.643 taildiff: 1
  79. B:
  80. scale 1.000 1.000 1.000
  81. Russia_Ust_Ishim.DG 0.468 0.042 -0.026
  82. Russia_Kostenki14.SG 0.653 0.569 0.071
  83. Russia_MA1_HG.SG 1.998 -1.163 -0.304
  84. Han.DG 0.979 -0.518 -0.133
  85. ONG.SG 0.619 -0.316 -0.026
  86. Papuan.DG 0.687 -0.418 -0.258
  87. Italy_North_Villabruna_HG 1.044 1.425 0.316
  88. Czech_Vestonice16 0.770 0.960 0.063
  89. Iberia_ElMiron 0.872 1.012 0.052
  90. Ethiopia_4500BP_published.SG -0.056 0.099 -0.006
  91. Karitiana.DG 1.963 -1.156 -0.278
  92. Israel_Natufian 0.005 2.208 -0.011
  93. Georgia_Satsurblia.SG -0.498 -0.762 3.554
  94. A:
  95. scale 406.793 852.210 1079.797
  96. Iran_GanjDareh_N -0.409 -0.423 -0.453
  97. Georgia_Kotias.SG 0.056 -0.082 1.941
  98. WSHG 1.934 -0.290 -0.094
  99. Anatolia_N 0.297 1.931 0.140
  100.  
  101.  
  102. full rank
  103. f4info:
  104. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 16.643 taildiff: 0.0826550691
  105. B:
  106. scale 974.702 539.980 203.181 435.462
  107. Russia_Ust_Ishim.DG 0.060 0.378 0.565 0.401
  108. Russia_Kostenki14.SG -0.751 0.277 0.645 0.857
  109. Russia_MA1_HG.SG -1.426 -0.140 1.997 -0.583
  110. Han.DG -0.758 -0.014 0.990 -0.222
  111. ONG.SG -0.637 -0.024 0.617 -0.160
  112. Papuan.DG -0.326 -0.071 0.715 -0.175
  113. Italy_North_Villabruna_HG -1.609 0.507 0.951 1.851
  114. Czech_Vestonice16 -1.424 0.017 0.660 1.144
  115. Iberia_ElMiron -1.418 0.122 0.783 1.284
  116. Ethiopia_4500BP_published.SG 0.181 0.090 -0.027 0.142
  117. Karitiana.DG -0.985 0.084 2.050 -0.470
  118. Israel_Natufian -1.165 -0.120 -0.156 2.137
  119. Georgia_Satsurblia.SG -0.569 3.529 -0.472 -0.683
  120. A:
  121. scale 2.000 2.000 2.000 2.000
  122. Iran_GanjDareh_N 2.000 0.000 0.000 0.000
  123. Georgia_Kotias.SG 0.000 2.000 0.000 0.000
  124. WSHG 0.000 0.000 2.000 0.000
  125. Anatolia_N 0.000 0.000 0.000 2.000
  126.  
  127.  
  128. best coefficients: 0.609 0.136 0.101 0.154
  129. Jackknife mean: 0.608423674 0.136077208 0.101310534 0.154188584
  130. std. errors: 0.047 0.033 0.017 0.024
  131.  
  132. error covariance (* 1,000,000)
  133. 2196 -1249 -391 -556
  134. -1249 1116 120 13
  135. -391 120 280 -9
  136. -556 13 -9 552
  137.  
  138.  
  139. summ: Turkmenistan_C_TepeAnau 4 0.082655 0.608 0.136 0.101 0.154 2196 -1249 -391 -556 1116 ...
  140. 120 13 280 -9 552
  141.  
  142. fixed pat wt dof chisq tail prob
  143. 0000 0 10 16.643 0.0826551 0.609 0.136 0.101 0.154
  144. 0001 1 11 54.996 7.76168e-08 0.788 0.114 0.098 0.000
  145. 0010 1 11 50.911 4.28962e-07 0.764 0.088 0.000 0.148
  146. 0100 1 11 32.304 0.000681656 0.762 0.000 0.088 0.150
  147. 1000 1 11 141.827 6.92037e-25 0.000 0.519 0.203 0.278
  148. 0011 2 12 343.989 0 2.198 -1.198 0.000 0.000 infeasible
  149. 0101 2 12 63.966 4.23129e-09 0.912 0.000 0.088 0.000
  150. 0110 2 12 57.437 6.59025e-08 0.854 0.000 0.000 0.146
  151. 1001 2 12 220.111 0 0.000 0.792 0.208 0.000
  152. 1010 2 12 230.634 0 0.000 0.746 0.000 0.254
  153. 1100 2 12 575.551 0 0.000 0.000 0.276 0.724
  154. 0111 3 13 84.892 1.31341e-12 1.000 0.000 0.000 0.000
  155. 1011 3 13 269.169 0 0.000 1.000 0.000 0.000
  156. 1101 3 13 1366.387 0 0.000 0.000 1.000 0.000
  157. 1110 3 13 750.855 0 0.000 0.000 0.000 1.000
  158. best pat: 0000 0.0826551 - -
  159. best pat: 0100 0.000681656 chi(nested): 15.661 p-value for nested model: 7.5768e-05
  160. best pat: 0110 6.59025e-08 chi(nested): 25.133 p-value for nested model: 5.34998e-07
  161. best pat: 0111 1.31341e-12 chi(nested): 27.455 p-value for nested model: 1.60779e-07
  162.  
  163. coeffs: 0.609 0.136 0.101 0.154
  164.  
  165. ## dscore:: f_4(Base, Fit, Rbase, right2)
  166. ## genstat:: f_4(Base, Fit, right1, right2)
  167.  
  168. details: Iran_GanjDareh_N Russia_Ust_Ishim.DG 0.000062 0.224234
  169. details: Georgia_Kotias.SG Russia_Ust_Ishim.DG 0.000700 1.705372
  170. details: WSHG Russia_Ust_Ishim.DG 0.002782 7.257949
  171. details: Anatolia_N Russia_Ust_Ishim.DG 0.000920 3.236202
  172. dscore: Russia_Ust_Ishim.DG f4: 0.000556 Z: 2.322238
  173.  
  174. details: Iran_GanjDareh_N Russia_Kostenki14.SG -0.000771 -2.514455
  175. details: Georgia_Kotias.SG Russia_Kostenki14.SG 0.000514 1.132154
  176. details: WSHG Russia_Kostenki14.SG 0.003174 8.018636
  177. details: Anatolia_N Russia_Kostenki14.SG 0.001969 6.074652
  178. dscore: Russia_Kostenki14.SG f4: 0.000226 Z: 0.844668
  179.  
  180. details: Iran_GanjDareh_N Russia_MA1_HG.SG -0.001463 -5.012092
  181. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.000259 -0.595329
  182. details: WSHG Russia_MA1_HG.SG 0.009827 24.172209
  183. details: Anatolia_N Russia_MA1_HG.SG -0.001338 -4.383256
  184. dscore: Russia_MA1_HG.SG f4: -0.000137 Z: -0.540031
  185.  
  186. details: Iran_GanjDareh_N Han.DG -0.000777 -3.113074
  187. details: Georgia_Kotias.SG Han.DG -0.000026 -0.071073
  188. details: WSHG Han.DG 0.004872 14.401237
  189. details: Anatolia_N Han.DG -0.000510 -1.981780
  190. dscore: Han.DG f4: -0.000062 Z: -0.279964
  191.  
  192. details: Iran_GanjDareh_N ONG.SG -0.000654 -2.549458
  193. details: Georgia_Kotias.SG ONG.SG -0.000045 -0.124319
  194. details: WSHG ONG.SG 0.003039 9.197618
  195. details: Anatolia_N ONG.SG -0.000367 -1.414866
  196. dscore: ONG.SG f4: -0.000153 Z: -0.684046
  197.  
  198. details: Iran_GanjDareh_N Papuan.DG -0.000334 -1.307145
  199. details: Georgia_Kotias.SG Papuan.DG -0.000132 -0.351637
  200. details: WSHG Papuan.DG 0.003520 9.938471
  201. details: Anatolia_N Papuan.DG -0.000401 -1.584093
  202. dscore: Papuan.DG f4: 0.000073 Z: 0.324656
  203.  
  204. details: Iran_GanjDareh_N Italy_North_Villabruna_HG -0.001651 -5.409929
  205. details: Georgia_Kotias.SG Italy_North_Villabruna_HG 0.000938 1.965942
  206. details: WSHG Italy_North_Villabruna_HG 0.004683 10.824259
  207. details: Anatolia_N Italy_North_Villabruna_HG 0.004251 12.717532
  208. dscore: Italy_North_Villabruna_HG f4: 0.000252 Z: 0.940859
  209.  
  210. details: Iran_GanjDareh_N Czech_Vestonice16 -0.001461 -4.831484
  211. details: Georgia_Kotias.SG Czech_Vestonice16 0.000032 0.075057
  212. details: WSHG Czech_Vestonice16 0.003250 8.536852
  213. details: Anatolia_N Czech_Vestonice16 0.002627 8.389495
  214. dscore: Czech_Vestonice16 f4: -0.000151 Z: -0.578845
  215.  
  216. details: Iran_GanjDareh_N Iberia_ElMiron -0.001455 -5.190129
  217. details: Georgia_Kotias.SG Iberia_ElMiron 0.000226 0.583609
  218. details: WSHG Iberia_ElMiron 0.003856 10.156867
  219. details: Anatolia_N Iberia_ElMiron 0.002949 10.048115
  220. dscore: Iberia_ElMiron f4: -0.000010 Z: -0.040426
  221.  
  222. details: Iran_GanjDareh_N Ethiopia_4500BP_published.SG 0.000185 0.881975
  223. details: Georgia_Kotias.SG Ethiopia_4500BP_published.SG 0.000166 0.554592
  224. details: WSHG Ethiopia_4500BP_published.SG -0.000131 -0.501456
  225. details: Anatolia_N Ethiopia_4500BP_published.SG 0.000327 1.663277
  226. dscore: Ethiopia_4500BP_published.SG f4: 0.000172 Z: 0.963698
  227.  
  228. details: Iran_GanjDareh_N Karitiana.DG -0.001011 -3.417789
  229. details: Georgia_Kotias.SG Karitiana.DG 0.000156 0.372482
  230. details: WSHG Karitiana.DG 0.010089 25.836743
  231. details: Anatolia_N Karitiana.DG -0.001080 -3.723233
  232. dscore: Karitiana.DG f4: 0.000261 Z: 1.006904
  233.  
  234. details: Iran_GanjDareh_N Israel_Natufian -0.001195 -5.258545
  235. details: Georgia_Kotias.SG Israel_Natufian -0.000222 -0.730235
  236. details: WSHG Israel_Natufian -0.000768 -2.749451
  237. details: Anatolia_N Israel_Natufian 0.004907 19.351477
  238. dscore: Israel_Natufian f4: -0.000079 Z: -0.404647
  239.  
  240. details: Iran_GanjDareh_N Georgia_Satsurblia.SG -0.000584 -2.037842
  241. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.006535 14.539799
  242. details: WSHG Georgia_Satsurblia.SG -0.002324 -6.383038
  243. details: Anatolia_N Georgia_Satsurblia.SG -0.001569 -5.295525
  244. dscore: Georgia_Satsurblia.SG f4: 0.000055 Z: 0.223290
  245.  
  246. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 2.322
  247. gendstat: Mbuti.DG Russia_Kostenki14.SG 0.845
  248. gendstat: Mbuti.DG Russia_MA1_HG.SG -0.540
  249. gendstat: Mbuti.DG Han.DG -0.280
  250. gendstat: Mbuti.DG ONG.SG -0.684
  251. gendstat: Mbuti.DG Papuan.DG 0.325
  252. gendstat: Mbuti.DG Italy_North_Villabruna_HG 0.941
  253. gendstat: Mbuti.DG Czech_Vestonice16 -0.579
  254. gendstat: Mbuti.DG Iberia_ElMiron -0.040
  255. gendstat: Mbuti.DG Ethiopia_4500BP_published.SG 0.964
  256. gendstat: Mbuti.DG Karitiana.DG 1.007
  257. gendstat: Mbuti.DG Israel_Natufian -0.405
  258. gendstat: Mbuti.DG Georgia_Satsurblia.SG 0.223
  259. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG -1.117
  260. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -2.467
  261. gendstat: Russia_Ust_Ishim.DG Han.DG -2.560
  262. gendstat: Russia_Ust_Ishim.DG ONG.SG -2.826
  263. gendstat: Russia_Ust_Ishim.DG Papuan.DG -1.896
  264. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -1.002
  265. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -2.381
  266. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron -2.010
  267. gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG -1.462
  268. gendstat: Russia_Ust_Ishim.DG Karitiana.DG -1.092
  269. gendstat: Russia_Ust_Ishim.DG Israel_Natufian -2.412
  270. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -1.767
  271. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.248
  272. gendstat: Russia_Kostenki14.SG Han.DG -1.046
  273. gendstat: Russia_Kostenki14.SG ONG.SG -1.411
  274. gendstat: Russia_Kostenki14.SG Papuan.DG -0.577
  275. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG 0.092
  276. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.292
  277. gendstat: Russia_Kostenki14.SG Iberia_ElMiron -0.829
  278. gendstat: Russia_Kostenki14.SG Ethiopia_4500BP_published.SG -0.180
  279. gendstat: Russia_Kostenki14.SG Karitiana.DG 0.121
  280. gendstat: Russia_Kostenki14.SG Israel_Natufian -1.121
  281. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.567
  282. gendstat: Russia_MA1_HG.SG Han.DG 0.287
  283. gendstat: Russia_MA1_HG.SG ONG.SG -0.059
  284. gendstat: Russia_MA1_HG.SG Papuan.DG 0.758
  285. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 1.290
  286. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -0.049
  287. gendstat: Russia_MA1_HG.SG Iberia_ElMiron 0.424
  288. gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 1.090
  289. gendstat: Russia_MA1_HG.SG Karitiana.DG 1.490
  290. gendstat: Russia_MA1_HG.SG Israel_Natufian 0.214
  291. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.641
  292. gendstat: Han.DG ONG.SG -0.464
  293. gendstat: Han.DG Papuan.DG 0.682
  294. gendstat: Han.DG Italy_North_Villabruna_HG 1.141
  295. gendstat: Han.DG Czech_Vestonice16 -0.328
  296. gendstat: Han.DG Iberia_ElMiron 0.201
  297. gendstat: Han.DG Ethiopia_4500BP_published.SG 0.950
  298. gendstat: Han.DG Karitiana.DG 1.573
  299. gendstat: Han.DG Israel_Natufian -0.070
  300. gendstat: Han.DG Georgia_Satsurblia.SG 0.440
  301. gendstat: ONG.SG Papuan.DG 1.087
  302. gendstat: ONG.SG Italy_North_Villabruna_HG 1.496
  303. gendstat: ONG.SG Czech_Vestonice16 0.006
  304. gendstat: ONG.SG Iberia_ElMiron 0.576
  305. gendstat: ONG.SG Ethiopia_4500BP_published.SG 1.263
  306. gendstat: ONG.SG Karitiana.DG 1.759
  307. gendstat: ONG.SG Israel_Natufian 0.307
  308. gendstat: ONG.SG Georgia_Satsurblia.SG 0.762
  309. gendstat: Papuan.DG Italy_North_Villabruna_HG 0.651
  310. gendstat: Papuan.DG Czech_Vestonice16 -0.793
  311. gendstat: Papuan.DG Iberia_ElMiron -0.320
  312. gendstat: Papuan.DG Ethiopia_4500BP_published.SG 0.379
  313. gendstat: Papuan.DG Karitiana.DG 0.806
  314. gendstat: Papuan.DG Israel_Natufian -0.634
  315. gendstat: Papuan.DG Georgia_Satsurblia.SG -0.068
  316. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -1.388
  317. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron -0.965
  318. gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG -0.265
  319. gendstat: Italy_North_Villabruna_HG Karitiana.DG 0.030
  320. gendstat: Italy_North_Villabruna_HG Israel_Natufian -1.236
  321. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG -0.621
  322. gendstat: Czech_Vestonice16 Iberia_ElMiron 0.496
  323. gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG 1.137
  324. gendstat: Czech_Vestonice16 Karitiana.DG 1.374
  325. gendstat: Czech_Vestonice16 Israel_Natufian 0.267
  326. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 0.658
  327. gendstat: Iberia_ElMiron Ethiopia_4500BP_published.SG 0.647
  328. gendstat: Iberia_ElMiron Karitiana.DG 0.975
  329. gendstat: Iberia_ElMiron Israel_Natufian -0.266
  330. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 0.224
  331. gendstat: Ethiopia_4500BP_published.SG Karitiana.DG 0.311
  332. gendstat: Ethiopia_4500BP_published.SG Israel_Natufian -1.060
  333. gendstat: Ethiopia_4500BP_published.SG Georgia_Satsurblia.SG -0.413
  334. gendstat: Karitiana.DG Israel_Natufian -1.226
  335. gendstat: Karitiana.DG Georgia_Satsurblia.SG -0.703
  336. gendstat: Israel_Natufian Georgia_Satsurblia.SG 0.494
  337.  
  338. ##end of qpAdm: 387.235 seconds cpu 1479.135 Mbytes in use
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