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onyx_IA

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Jun 16th, 2022
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  1. qpAdm: parameter file: parqpadm.txt
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: fstatsa.txt
  5. popleft: left.txt
  6. popright: right.txt
  7. details: YES
  8. ## qpAdm version: 1520
  9. seed: 1874832160
  10. *** recommended that inbreed be explicitly set ***
  11. inbreed set NO
  12.  
  13. left pops:
  14. onyxnebula
  15. Bulgaria_IA
  16. Iran_IA_HajjiFiruz
  17.  
  18. right pops:
  19. Mbuti.DG
  20. Russia_Ust_Ishim.DG
  21. China_Tianyuan
  22. Goyet_Neanderthal.SG
  23. Russia_Sunghir3.SG
  24. Russia_Kostenki14.SG
  25. Russia_MA1_HG.SG
  26. Georgia_Satsurblia.SG
  27. Russia_DevilsCave_N.SG
  28. Papuan.DG
  29. Iran_GanjDareh_N
  30. Greece_Minoan_Lassithi
  31. Greece_Peloponnese_N
  32. Russia_Samara_EBA_Yamnaya
  33. ONG.SG
  34.  
  35. codimension 1
  36. f4info:
  37. f4rank: 1 dof: 13 chisq: 16.132 tail: 0.242059532 dofdiff: 15 chisqdiff: -16.132 taildiff: 1
  38. B:
  39. scale 1.000
  40. Russia_Ust_Ishim.DG 0.527
  41. China_Tianyuan 0.146
  42. Goyet_Neanderthal.SG 0.599
  43. Russia_Sunghir3.SG 0.427
  44. Russia_Kostenki14.SG 0.652
  45. Russia_MA1_HG.SG 0.093
  46. Georgia_Satsurblia.SG -0.387
  47. Russia_DevilsCave_N.SG -0.422
  48. Papuan.DG -0.186
  49. Iran_GanjDareh_N -1.605
  50. Greece_Minoan_Lassithi 1.946
  51. Greece_Peloponnese_N 2.332
  52. Russia_Samara_EBA_Yamnaya 0.566
  53. ONG.SG -0.491
  54. A:
  55. scale 984.430
  56. Bulgaria_IA 0.534
  57. Iran_IA_HajjiFiruz -1.309
  58.  
  59.  
  60. full rank
  61. f4info:
  62. f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 13 chisqdiff: 16.132 taildiff: 0.242059532
  63. B:
  64. scale 1065.656 760.840
  65. Russia_Ust_Ishim.DG 0.341 -0.418
  66. China_Tianyuan 0.738 0.258
  67. Goyet_Neanderthal.SG 0.099 -0.724
  68. Russia_Sunghir3.SG 0.619 -0.233
  69. Russia_Kostenki14.SG 0.961 -0.378
  70. Russia_MA1_HG.SG -0.649 -0.257
  71. Georgia_Satsurblia.SG 0.450 0.828
  72. Russia_DevilsCave_N.SG 0.395 0.827
  73. Papuan.DG 0.048 0.206
  74. Iran_GanjDareh_N 0.346 2.410
  75. Greece_Minoan_Lassithi 2.004 -1.550
  76. Greece_Peloponnese_N 2.486 -1.739
  77. Russia_Samara_EBA_Yamnaya 0.954 -0.150
  78. ONG.SG -0.102 0.551
  79. A:
  80. scale 1.414 1.414
  81. Bulgaria_IA 1.414 0.000
  82. Iran_IA_HajjiFiruz 0.000 1.414
  83.  
  84.  
  85. best coefficients: 0.710 0.290
  86. totmean: 0.710 0.290
  87. boot mean: 0.711 0.289
  88. std. errors: 0.057 0.057
  89.  
  90. error covariance (* 1,000,000)
  91. 3305 -3305
  92. -3305 3305
  93.  
  94.  
  95. summ: onyxnebula 2 0.242060 0.711 0.289 3305 -3305 3305
  96.  
  97. fixed pat wt dof chisq tail prob
  98. 00 0 13 16.132 0.24206 0.710 0.290
  99. 01 1 14 38.537 0.000429816 1.000 0.000
  100. 10 1 14 147.539 2.23134e-24 0.000 1.000
  101. best pat: 00 0.24206 - -
  102. best pat: 01 0.000429816 chi(nested): 22.405 p-value for nested model: 2.20787e-06
  103.  
  104. coeffs: 0.710 0.290
  105.  
  106. ## dscore:: f_4(Base, Fit, Rbase, right2)
  107. ## genstat:: f_4(Base, Fit, right1, right2)
  108.  
  109. details: Bulgaria_IA Russia_Ust_Ishim.DG 0.000320 0.502927
  110. details: Iran_IA_HajjiFiruz Russia_Ust_Ishim.DG -0.000549 -0.834791
  111. dscore: Russia_Ust_Ishim.DG f4: 0.000068 Z: 0.118625
  112.  
  113. details: Bulgaria_IA China_Tianyuan 0.000692 1.032442
  114. details: Iran_IA_HajjiFiruz China_Tianyuan 0.000339 0.472476
  115. dscore: China_Tianyuan f4: 0.000590 Z: 0.994201
  116.  
  117. details: Bulgaria_IA Goyet_Neanderthal.SG 0.000092 0.199439
  118. details: Iran_IA_HajjiFiruz Goyet_Neanderthal.SG -0.000951 -2.000369
  119. dscore: Goyet_Neanderthal.SG f4: -0.000210 Z: -0.527429
  120.  
  121. details: Bulgaria_IA Russia_Sunghir3.SG 0.000581 0.868100
  122. details: Iran_IA_HajjiFiruz Russia_Sunghir3.SG -0.000306 -0.418166
  123. dscore: Russia_Sunghir3.SG f4: 0.000324 Z: 0.549267
  124.  
  125. details: Bulgaria_IA Russia_Kostenki14.SG 0.000902 1.268834
  126. details: Iran_IA_HajjiFiruz Russia_Kostenki14.SG -0.000497 -0.687062
  127. dscore: Russia_Kostenki14.SG f4: 0.000496 Z: 0.796847
  128.  
  129. details: Bulgaria_IA Russia_MA1_HG.SG -0.000609 -0.831852
  130. details: Iran_IA_HajjiFiruz Russia_MA1_HG.SG -0.000338 -0.439853
  131. dscore: Russia_MA1_HG.SG f4: -0.000531 Z: -0.817510
  132.  
  133. details: Bulgaria_IA Georgia_Satsurblia.SG 0.000422 0.601303
  134. details: Iran_IA_HajjiFiruz Georgia_Satsurblia.SG 0.001088 1.517001
  135. dscore: Georgia_Satsurblia.SG f4: 0.000615 Z: 1.006837
  136.  
  137. details: Bulgaria_IA Russia_DevilsCave_N.SG 0.000370 0.679825
  138. details: Iran_IA_HajjiFiruz Russia_DevilsCave_N.SG 0.001087 1.829526
  139. dscore: Russia_DevilsCave_N.SG f4: 0.000578 Z: 1.204927
  140.  
  141. details: Bulgaria_IA Papuan.DG 0.000045 0.086512
  142. details: Iran_IA_HajjiFiruz Papuan.DG 0.000270 0.484402
  143. dscore: Papuan.DG f4: 0.000110 Z: 0.241272
  144.  
  145. details: Bulgaria_IA Iran_GanjDareh_N 0.000325 0.682596
  146. details: Iran_IA_HajjiFiruz Iran_GanjDareh_N 0.003168 6.097192
  147. dscore: Iran_GanjDareh_N f4: 0.001149 Z: 2.705919
  148.  
  149. details: Bulgaria_IA Greece_Minoan_Lassithi 0.001881 3.655621
  150. details: Iran_IA_HajjiFiruz Greece_Minoan_Lassithi -0.002037 -3.804829
  151. dscore: Greece_Minoan_Lassithi f4: 0.000745 Z: 1.668298
  152.  
  153. details: Bulgaria_IA Greece_Peloponnese_N 0.002333 4.754157
  154. details: Iran_IA_HajjiFiruz Greece_Peloponnese_N -0.002286 -4.451577
  155. dscore: Greece_Peloponnese_N f4: 0.000994 Z: 2.315513
  156.  
  157. details: Bulgaria_IA Russia_Samara_EBA_Yamnaya 0.000896 1.991176
  158. details: Iran_IA_HajjiFiruz Russia_Samara_EBA_Yamnaya -0.000197 -0.388720
  159. dscore: Russia_Samara_EBA_Yamnaya f4: 0.000579 Z: 1.441312
  160.  
  161. details: Bulgaria_IA ONG.SG -0.000096 -0.181712
  162. details: Iran_IA_HajjiFiruz ONG.SG 0.000724 1.287389
  163. dscore: ONG.SG f4: 0.000142 Z: 0.301344
  164.  
  165. gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.119
  166. gendstat: Mbuti.DG China_Tianyuan 0.994
  167. gendstat: Mbuti.DG Goyet_Neanderthal.SG -0.527
  168. gendstat: Mbuti.DG Russia_Sunghir3.SG 0.549
  169. gendstat: Mbuti.DG Russia_Kostenki14.SG 0.797
  170. gendstat: Mbuti.DG Russia_MA1_HG.SG -0.818
  171. gendstat: Mbuti.DG Georgia_Satsurblia.SG 1.007
  172. gendstat: Mbuti.DG Russia_DevilsCave_N.SG 1.205
  173. gendstat: Mbuti.DG Papuan.DG 0.241
  174. gendstat: Mbuti.DG Iran_GanjDareh_N 2.706
  175. gendstat: Mbuti.DG Greece_Minoan_Lassithi 1.668
  176. gendstat: Mbuti.DG Greece_Peloponnese_N 2.316
  177. gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya 1.441
  178. gendstat: Mbuti.DG ONG.SG 0.301
  179. gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.733
  180. gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG -0.414
  181. gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG 0.371
  182. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.590
  183. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.805
  184. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.764
  185. gendstat: Russia_Ust_Ishim.DG Russia_DevilsCave_N.SG 0.837
  186. gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.071
  187. gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N 1.830
  188. gendstat: Russia_Ust_Ishim.DG Greece_Minoan_Lassithi 1.134
  189. gendstat: Russia_Ust_Ishim.DG Greece_Peloponnese_N 1.571
  190. gendstat: Russia_Ust_Ishim.DG Russia_Samara_EBA_Yamnaya 0.909
  191. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.124
  192. gendstat: China_Tianyuan Goyet_Neanderthal.SG -1.122
  193. gendstat: China_Tianyuan Russia_Sunghir3.SG -0.370
  194. gendstat: China_Tianyuan Russia_Kostenki14.SG -0.122
  195. gendstat: China_Tianyuan Russia_MA1_HG.SG -1.455
  196. gendstat: China_Tianyuan Georgia_Satsurblia.SG 0.033
  197. gendstat: China_Tianyuan Russia_DevilsCave_N.SG -0.019
  198. gendstat: China_Tianyuan Papuan.DG -0.797
  199. gendstat: China_Tianyuan Iran_GanjDareh_N 0.873
  200. gendstat: China_Tianyuan Greece_Minoan_Lassithi 0.240
  201. gendstat: China_Tianyuan Greece_Peloponnese_N 0.670
  202. gendstat: China_Tianyuan Russia_Samara_EBA_Yamnaya -0.018
  203. gendstat: China_Tianyuan ONG.SG -0.767
  204. gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG 0.786
  205. gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG 0.993
  206. gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.434
  207. gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG 1.155
  208. gendstat: Goyet_Neanderthal.SG Russia_DevilsCave_N.SG 1.277
  209. gendstat: Goyet_Neanderthal.SG Papuan.DG 0.539
  210. gendstat: Goyet_Neanderthal.SG Iran_GanjDareh_N 2.377
  211. gendstat: Goyet_Neanderthal.SG Greece_Minoan_Lassithi 1.684
  212. gendstat: Goyet_Neanderthal.SG Greece_Peloponnese_N 2.145
  213. gendstat: Goyet_Neanderthal.SG Russia_Samara_EBA_Yamnaya 1.424
  214. gendstat: Goyet_Neanderthal.SG ONG.SG 0.568
  215. gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.255
  216. gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG -1.197
  217. gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG 0.380
  218. gendstat: Russia_Sunghir3.SG Russia_DevilsCave_N.SG 0.403
  219. gendstat: Russia_Sunghir3.SG Papuan.DG -0.344
  220. gendstat: Russia_Sunghir3.SG Iran_GanjDareh_N 1.348
  221. gendstat: Russia_Sunghir3.SG Greece_Minoan_Lassithi 0.698
  222. gendstat: Russia_Sunghir3.SG Greece_Peloponnese_N 1.120
  223. gendstat: Russia_Sunghir3.SG Russia_Samara_EBA_Yamnaya 0.454
  224. gendstat: Russia_Sunghir3.SG ONG.SG -0.298
  225. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -1.408
  226. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG 0.161
  227. gendstat: Russia_Kostenki14.SG Russia_DevilsCave_N.SG 0.126
  228. gendstat: Russia_Kostenki14.SG Papuan.DG -0.602
  229. gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N 1.084
  230. gendstat: Russia_Kostenki14.SG Greece_Minoan_Lassithi 0.416
  231. gendstat: Russia_Kostenki14.SG Greece_Peloponnese_N 0.829
  232. gendstat: Russia_Kostenki14.SG Russia_Samara_EBA_Yamnaya 0.142
  233. gendstat: Russia_Kostenki14.SG ONG.SG -0.552
  234. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 1.461
  235. gendstat: Russia_MA1_HG.SG Russia_DevilsCave_N.SG 1.686
  236. gendstat: Russia_MA1_HG.SG Papuan.DG 0.982
  237. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 2.638
  238. gendstat: Russia_MA1_HG.SG Greece_Minoan_Lassithi 1.902
  239. gendstat: Russia_MA1_HG.SG Greece_Peloponnese_N 2.321
  240. gendstat: Russia_MA1_HG.SG Russia_Samara_EBA_Yamnaya 1.899
  241. gendstat: Russia_MA1_HG.SG ONG.SG 1.064
  242. gendstat: Georgia_Satsurblia.SG Russia_DevilsCave_N.SG -0.057
  243. gendstat: Georgia_Satsurblia.SG Papuan.DG -0.787
  244. gendstat: Georgia_Satsurblia.SG Iran_GanjDareh_N 0.897
  245. gendstat: Georgia_Satsurblia.SG Greece_Minoan_Lassithi 0.211
  246. gendstat: Georgia_Satsurblia.SG Greece_Peloponnese_N 0.617
  247. gendstat: Georgia_Satsurblia.SG Russia_Samara_EBA_Yamnaya -0.066
  248. gendstat: Georgia_Satsurblia.SG ONG.SG -0.751
  249. gendstat: Russia_DevilsCave_N.SG Papuan.DG -0.997
  250. gendstat: Russia_DevilsCave_N.SG Iran_GanjDareh_N 1.183
  251. gendstat: Russia_DevilsCave_N.SG Greece_Minoan_Lassithi 0.319
  252. gendstat: Russia_DevilsCave_N.SG Greece_Peloponnese_N 0.807
  253. gendstat: Russia_DevilsCave_N.SG Russia_Samara_EBA_Yamnaya 0.001
  254. gendstat: Russia_DevilsCave_N.SG ONG.SG -0.951
  255. gendstat: Papuan.DG Iran_GanjDareh_N 2.230
  256. gendstat: Papuan.DG Greece_Minoan_Lassithi 1.204
  257. gendstat: Papuan.DG Greece_Peloponnese_N 1.777
  258. gendstat: Papuan.DG Russia_Samara_EBA_Yamnaya 1.068
  259. gendstat: Papuan.DG ONG.SG 0.073
  260. gendstat: Iran_GanjDareh_N Greece_Minoan_Lassithi -0.863
  261. gendstat: Iran_GanjDareh_N Greece_Peloponnese_N -0.356
  262. gendstat: Iran_GanjDareh_N Russia_Samara_EBA_Yamnaya -1.559
  263. gendstat: Iran_GanjDareh_N ONG.SG -2.059
  264. gendstat: Greece_Minoan_Lassithi Greece_Peloponnese_N 0.650
  265. gendstat: Greece_Minoan_Lassithi Russia_Samara_EBA_Yamnaya -0.396
  266. gendstat: Greece_Minoan_Lassithi ONG.SG -1.208
  267. gendstat: Greece_Peloponnese_N Russia_Samara_EBA_Yamnaya -1.033
  268. gendstat: Greece_Peloponnese_N ONG.SG -1.803
  269. gendstat: Russia_Samara_EBA_Yamnaya ONG.SG -1.014
  270.  
  271. ##end of qpAdm: 2.236 seconds cpu 0.823 Mbytes in use
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