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  1. The system is: Linux - 3.10.0-957.10.1.el7.x86_64 - x86_64
  2. Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
  3. Compiler: /usr/bin/cc
  4. Build flags:
  5. Id flags:
  6.  
  7. The output was:
  8. 0
  9.  
  10.  
  11. Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"
  12.  
  13. The C compiler identification is GNU, found in "/home/genomica/DATA/Software/salmon/CMakeFiles/3.15.0-rc2/CompilerIdC/a.out"
  14.  
  15. Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
  16. Compiler: /usr/bin/c++
  17. Build flags:
  18. Id flags:
  19.  
  20. The output was:
  21. 0
  22.  
  23.  
  24. Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"
  25.  
  26. The CXX compiler identification is GNU, found in "/home/genomica/DATA/Software/salmon/CMakeFiles/3.15.0-rc2/CompilerIdCXX/a.out"
  27.  
  28. Determining if the C compiler works passed with the following output:
  29. Change Dir: /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp
  30.  
  31. Run Build Command(s):/usr/bin/gmake cmTC_94568/fast && /usr/bin/gmake -f CMakeFiles/cmTC_94568.dir/build.make CMakeFiles/cmTC_94568.dir/build
  32. gmake[1]: Entering directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  33. Building C object CMakeFiles/cmTC_94568.dir/testCCompiler.c.o
  34. /usr/bin/cc -o CMakeFiles/cmTC_94568.dir/testCCompiler.c.o -c /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp/testCCompiler.c
  35. Linking C executable cmTC_94568
  36. /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_94568.dir/link.txt --verbose=1
  37. /usr/bin/cc CMakeFiles/cmTC_94568.dir/testCCompiler.c.o -o cmTC_94568
  38. gmake[1]: Leaving directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  39.  
  40.  
  41.  
  42. Detecting C compiler ABI info compiled with the following output:
  43. Change Dir: /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp
  44.  
  45. Run Build Command(s):/usr/bin/gmake cmTC_04ec7/fast && /usr/bin/gmake -f CMakeFiles/cmTC_04ec7.dir/build.make CMakeFiles/cmTC_04ec7.dir/build
  46. gmake[1]: Entering directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  47. Building C object CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o
  48. /usr/bin/cc -v -o CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o -c /usr/local/share/cmake-3.15/Modules/CMakeCCompilerABI.c
  49. Using built-in specs.
  50. COLLECT_GCC=/usr/bin/cc
  51. Target: x86_64-redhat-linux
  52. Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
  53. Thread model: posix
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  56. /usr/libexec/gcc/x86_64-redhat-linux/4.8.5/cc1 -quiet -v /usr/local/share/cmake-3.15/Modules/CMakeCCompilerABI.c -quiet -dumpbase CMakeCCompilerABI.c -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o -version -o /tmp/ccHu9gpz.s
  57. GNU C (GCC) version 4.8.5 20150623 (Red Hat 4.8.5-36) (x86_64-redhat-linux)
  58. compiled by GNU C version 4.8.5 20150623 (Red Hat 4.8.5-36), GMP version 6.0.0, MPFR version 3.1.1, MPC version 1.0.1
  59. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
  60. ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include-fixed"
  61. ignoring nonexistent directory "/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../x86_64-redhat-linux/include"
  62. #include "..." search starts here:
  63. #include <...> search starts here:
  64. /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include
  65. /usr/local/include
  66. /usr/include
  67. End of search list.
  68. GNU C (GCC) version 4.8.5 20150623 (Red Hat 4.8.5-36) (x86_64-redhat-linux)
  69. compiled by GNU C version 4.8.5 20150623 (Red Hat 4.8.5-36), GMP version 6.0.0, MPFR version 3.1.1, MPC version 1.0.1
  70. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
  71. Compiler executable checksum: 1d991baef7d22a1cfb4879366b74b684
  72. COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64'
  73. as -v --64 -o CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o /tmp/ccHu9gpz.s
  74. GNU assembler version 2.27 (x86_64-redhat-linux) using BFD version version 2.27-34.base.el7
  75. COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/
  76. LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../:/lib/:/usr/lib/
  77. COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64'
  78. Linking C executable cmTC_04ec7
  79. /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_04ec7.dir/link.txt --verbose=1
  80. /usr/bin/cc -v CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o -o cmTC_04ec7
  81. Using built-in specs.
  82. COLLECT_GCC=/usr/bin/cc
  83. COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper
  84. Target: x86_64-redhat-linux
  85. Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
  86. Thread model: posix
  87. gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC)
  88. COMPILER_PATH=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/:/usr/libexec/gcc/x86_64-redhat-linux/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/
  89. LIBRARY_PATH=/usr/lib/gcc/x86_64-redhat-linux/4.8.5/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../:/lib/:/usr/lib/
  90. COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_04ec7' '-mtune=generic' '-march=x86-64'
  91. /usr/libexec/gcc/x86_64-redhat-linux/4.8.5/collect2 --build-id --no-add-needed --eh-frame-hdr --hash-style=gnu -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o cmTC_04ec7 /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. CMakeFiles/cmTC_04ec7.dir/CMakeCCompilerABI.c.o -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o
  92. gmake[1]: Leaving directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  93.  
  94.  
  95.  
  96. Parsed C implicit include dir info from above output: rv=done
  97. found start of include info
  98. found start of implicit include info
  99. add: [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include]
  100. add: [/usr/local/include]
  101. add: [/usr/include]
  102. end of search list found
  103. collapse include dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include] ==> [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include]
  104. collapse include dir [/usr/local/include] ==> [/usr/local/include]
  105. collapse include dir [/usr/include] ==> [/usr/include]
  106. implicit include dirs: [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include;/usr/local/include;/usr/include]
  107.  
  108.  
  109. Parsed C implicit link information from above output:
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  350. arg [-m] ==> ignore
  351. arg [elf_x86_64] ==> ignore
  352. arg [-dynamic-linker] ==> ignore
  353. arg [/lib64/ld-linux-x86-64.so.2] ==> ignore
  354. arg [-o] ==> ignore
  355. arg [cmTC_5ece1] ==> ignore
  356. arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o] ==> ignore
  357. arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o] ==> ignore
  358. arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o] ==> ignore
  359. arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5]
  360. arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64]
  361. arg [-L/lib/../lib64] ==> dir [/lib/../lib64]
  362. arg [-L/usr/lib/../lib64] ==> dir [/usr/lib/../lib64]
  363. arg [-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..] ==> dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..]
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  368. arg [-lgcc] ==> lib [gcc]
  369. arg [-lc] ==> lib [c]
  370. arg [-lgcc_s] ==> lib [gcc_s]
  371. arg [-lgcc] ==> lib [gcc]
  372. arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o] ==> ignore
  373. arg [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o] ==> ignore
  374. collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5] ==> [/usr/lib/gcc/x86_64-redhat-linux/4.8.5]
  375. collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64] ==> [/usr/lib64]
  376. collapse library dir [/lib/../lib64] ==> [/lib64]
  377. collapse library dir [/usr/lib/../lib64] ==> [/usr/lib64]
  378. collapse library dir [/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../..] ==> [/usr/lib]
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  381. implicit fwks: []
  382.  
  383.  
  384.  
  385.  
  386. Detecting CXX [-std=c++1y] compiler features compiled with the following output:
  387. Change Dir: /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp
  388.  
  389. Run Build Command(s):/usr/bin/gmake cmTC_210c6/fast && /usr/bin/gmake -f CMakeFiles/cmTC_210c6.dir/build.make CMakeFiles/cmTC_210c6.dir/build
  390. gmake[1]: Entering directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  391. Building CXX object CMakeFiles/cmTC_210c6.dir/feature_tests.cxx.o
  392. /usr/bin/c++ -std=c++1y -o CMakeFiles/cmTC_210c6.dir/feature_tests.cxx.o -c /home/genomica/DATA/Software/salmon/CMakeFiles/feature_tests.cxx
  393. Linking CXX executable cmTC_210c6
  394. /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_210c6.dir/link.txt --verbose=1
  395. /usr/bin/c++ CMakeFiles/cmTC_210c6.dir/feature_tests.cxx.o -o cmTC_210c6
  396. gmake[1]: Leaving directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  397.  
  398.  
  399.  
  400. Feature record: CXX_FEATURE:1cxx_template_template_parameters
  401. Feature record: CXX_FEATURE:1cxx_alias_templates
  402. Feature record: CXX_FEATURE:1cxx_alignas
  403. Feature record: CXX_FEATURE:1cxx_alignof
  404. Feature record: CXX_FEATURE:1cxx_attributes
  405. Feature record: CXX_FEATURE:1cxx_auto_type
  406. Feature record: CXX_FEATURE:1cxx_constexpr
  407. Feature record: CXX_FEATURE:1cxx_decltype
  408. Feature record: CXX_FEATURE:1cxx_decltype_incomplete_return_types
  409. Feature record: CXX_FEATURE:1cxx_default_function_template_args
  410. Feature record: CXX_FEATURE:1cxx_defaulted_functions
  411. Feature record: CXX_FEATURE:1cxx_defaulted_move_initializers
  412. Feature record: CXX_FEATURE:1cxx_delegating_constructors
  413. Feature record: CXX_FEATURE:1cxx_deleted_functions
  414. Feature record: CXX_FEATURE:1cxx_enum_forward_declarations
  415. Feature record: CXX_FEATURE:1cxx_explicit_conversions
  416. Feature record: CXX_FEATURE:1cxx_extended_friend_declarations
  417. Feature record: CXX_FEATURE:1cxx_extern_templates
  418. Feature record: CXX_FEATURE:1cxx_final
  419. Feature record: CXX_FEATURE:1cxx_func_identifier
  420. Feature record: CXX_FEATURE:1cxx_generalized_initializers
  421. Feature record: CXX_FEATURE:1cxx_inheriting_constructors
  422. Feature record: CXX_FEATURE:1cxx_inline_namespaces
  423. Feature record: CXX_FEATURE:1cxx_lambdas
  424. Feature record: CXX_FEATURE:1cxx_local_type_template_args
  425. Feature record: CXX_FEATURE:1cxx_long_long_type
  426. Feature record: CXX_FEATURE:1cxx_noexcept
  427. Feature record: CXX_FEATURE:1cxx_nonstatic_member_init
  428. Feature record: CXX_FEATURE:1cxx_nullptr
  429. Feature record: CXX_FEATURE:1cxx_override
  430. Feature record: CXX_FEATURE:1cxx_range_for
  431. Feature record: CXX_FEATURE:1cxx_raw_string_literals
  432. Feature record: CXX_FEATURE:1cxx_reference_qualified_functions
  433. Feature record: CXX_FEATURE:1cxx_right_angle_brackets
  434. Feature record: CXX_FEATURE:1cxx_rvalue_references
  435. Feature record: CXX_FEATURE:1cxx_sizeof_member
  436. Feature record: CXX_FEATURE:1cxx_static_assert
  437. Feature record: CXX_FEATURE:1cxx_strong_enums
  438. Feature record: CXX_FEATURE:1cxx_thread_local
  439. Feature record: CXX_FEATURE:1cxx_trailing_return_types
  440. Feature record: CXX_FEATURE:1cxx_unicode_literals
  441. Feature record: CXX_FEATURE:1cxx_uniform_initialization
  442. Feature record: CXX_FEATURE:1cxx_unrestricted_unions
  443. Feature record: CXX_FEATURE:1cxx_user_literals
  444. Feature record: CXX_FEATURE:1cxx_variadic_macros
  445. Feature record: CXX_FEATURE:1cxx_variadic_templates
  446. Feature record: CXX_FEATURE:0cxx_aggregate_default_initializers
  447. Feature record: CXX_FEATURE:0cxx_attribute_deprecated
  448. Feature record: CXX_FEATURE:0cxx_binary_literals
  449. Feature record: CXX_FEATURE:0cxx_contextual_conversions
  450. Feature record: CXX_FEATURE:0cxx_decltype_auto
  451. Feature record: CXX_FEATURE:0cxx_digit_separators
  452. Feature record: CXX_FEATURE:0cxx_generic_lambdas
  453. Feature record: CXX_FEATURE:0cxx_lambda_init_captures
  454. Feature record: CXX_FEATURE:0cxx_relaxed_constexpr
  455. Feature record: CXX_FEATURE:0cxx_return_type_deduction
  456. Feature record: CXX_FEATURE:0cxx_variable_templates
  457. Determining if the include file pthread.h exists passed with the following output:
  458. Change Dir: /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp
  459.  
  460. Run Build Command(s):/usr/bin/gmake cmTC_918a3/fast && /usr/bin/gmake -f CMakeFiles/cmTC_918a3.dir/build.make CMakeFiles/cmTC_918a3.dir/build
  461. gmake[1]: Entering directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
  462. Building C object CMakeFiles/cmTC_918a3.dir/CheckIncludeFile.c.o
  463. /usr/bin/cc -o CMakeFiles/cmTC_918a3.dir/CheckIncludeFile.c.o -c /home/genomica/DATA/Software/salmon/CMakeFiles/CMakeTmp/CheckIncludeFile.c
  464. Linking C executable cmTC_918a3
  465. /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_918a3.dir/link.txt --verbose=1
  466. /usr/bin/cc CMakeFiles/cmTC_918a3.dir/CheckIncludeFile.c.o -o cmTC_918a3
  467. gmake[1]: Leaving directory `/mnt/d8e73111-db5e-4011-87aa-e4d64fb8c1e9/DATA/Software/salmon/CMakeFiles/CMakeTmp'
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