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misnomer001

DinkhaB1 aze_ln + ivc + bustan + steppe pass

misnomer001
Aug 27th, 2022
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  1. qpAdm: parameter file: parqpa2
  2. ### THE INPUT PARAMETERS
  3. ##PARAMETER NAME: VALUE
  4. fstatsname: dinkha_fstats
  5. popleft: left
  6. popright: right
  7. details: YES
  8. allsnps: YES
  9. inbreed: NO
  10. oldallsnps: NO
  11. ## qpAdm version: 1520
  12. seed: 1142158308
  13. inbreed set NO
  14. inbreed set NO
  15.  
  16. left pops:
  17. IRN_DinkhaTepe_BIA_B
  18. Azerbaijan_Caucasus_lowlands_LN
  19. IVCp
  20. Uzbekistan_Bustan_BA
  21. Russia_Steppe_Catacomb
  22.  
  23. right pops:
  24. Mbuti.DG
  25. Turkey_N
  26. Russia_MLBA_Sintashta
  27. ONG.SG
  28. Tarim_EMBA1
  29. PPN
  30. Russia_Samara_EBA_Yamnaya
  31. CHG
  32. EHG
  33. Iran_HajjiFiruz_N
  34. Serbia_IronGates_Mesolithic
  35. Iran_GanjDareh_N
  36.  
  37. codimension 1
  38. f4info:
  39. f4rank: 3 dof: 8 chisq: 4.437 tail: 0.815742138 dofdiff: 10 chisqdiff: -4.437 taildiff: 1
  40. B:
  41. scale 1.000 1.000 1.000
  42. Turkey_N 0.282 1.775 -0.695
  43. Russia_MLBA_Sintashta 1.140 0.422 -0.416
  44. ONG.SG -0.109 -1.114 0.187
  45. Tarim_EMBA1 1.412 -1.312 0.282
  46. PPN 0.194 1.654 -0.781
  47. Russia_Samara_EBA_Yamnaya 1.444 -0.103 -0.220
  48. CHG 0.439 0.493 0.960
  49. EHG 1.758 -0.652 -0.373
  50. Iran_HajjiFiruz_N 0.118 1.107 0.775
  51. Serbia_IronGates_Mesolithic 1.476 0.215 -1.104
  52. Iran_GanjDareh_N -0.139 0.153 2.586
  53. A:
  54. scale 439.371 570.916 1758.228
  55. Azerbaijan_Caucasus_lowlands_LN -0.161 0.657 -0.807
  56. IVCp -0.945 -1.731 -0.561
  57. Uzbekistan_Bustan_BA 0.049 -0.341 1.735
  58. Russia_Steppe_Catacomb 1.755 -0.676 -0.153
  59.  
  60.  
  61. full rank
  62. f4info:
  63. f4rank: 4 dof: 0 chisq: 0.000 tail: 1 dofdiff: 8 chisqdiff: 4.437 taildiff: 0.815742138
  64. B:
  65. scale 744.198 284.833 821.326 229.454
  66. Turkey_N 1.721 -1.663 -1.377 -0.197
  67. Russia_MLBA_Sintashta 0.208 -1.048 -0.431 0.949
  68. ONG.SG -0.998 0.996 0.707 0.209
  69. Tarim_EMBA1 -1.510 0.237 1.066 1.676
  70. PPN 1.704 -1.498 -1.401 -0.239
  71. Russia_Samara_EBA_Yamnaya -0.441 -0.801 0.002 1.363
  72. CHG 0.254 -0.767 0.719 0.288
  73. EHG -0.810 -0.497 0.204 1.824
  74. Iran_HajjiFiruz_N 0.608 -1.129 0.072 -0.200
  75. Serbia_IronGates_Mesolithic 0.247 -1.000 -0.810 1.341
  76. Iran_GanjDareh_N -0.684 -0.301 2.024 -0.210
  77. A:
  78. scale 2.000 2.000 2.000 2.000
  79. Azerbaijan_Caucasus_lowlands_LN 2.000 0.000 0.000 0.000
  80. IVCp 0.000 2.000 0.000 0.000
  81. Uzbekistan_Bustan_BA 0.000 0.000 2.000 0.000
  82. Russia_Steppe_Catacomb 0.000 0.000 0.000 2.000
  83.  
  84.  
  85. best coefficients: 0.518 0.104 0.283 0.095
  86. totmean: 0.518 0.104 0.283 0.095
  87. boot mean: 0.518 0.104 0.282 0.095
  88. std. errors: 0.023 0.026 0.043 0.014
  89.  
  90. error covariance (* 1,000,000)
  91. 514 231 -739 -6
  92. 231 685 -900 -16
  93. -739 -900 1810 -171
  94. -6 -16 -171 193
  95.  
  96.  
  97. summ: IRN_DinkhaTepe_BIA_B 4 0.815742 0.518 0.104 0.282 0.095 514 231 -739 -6 685 ...
  98. -900 -16 1810 -171 193
  99.  
  100. fixed pat wt dof chisq tail prob
  101. 0000 0 8 4.437 0.815742 0.518 0.104 0.283 0.095
  102. 0001 1 9 54.161 1.75917e-08 0.545 0.128 0.327 0.000
  103. 0010 1 9 39.099 1.10585e-05 0.638 0.251 0.000 0.111
  104. 0100 1 9 20.581 0.0146475 0.490 0.000 0.411 0.099
  105. 1000 1 9 334.649 0 0.000 -0.594 1.557 0.036 infeasible
  106. 0011 2 10 93.179 1.25167e-15 0.696 0.304 0.000 0.000
  107. 0101 2 10 72.481 1.46809e-11 0.503 0.000 0.497 0.000
  108. 0110 2 10 195.595 0 0.820 0.000 0.000 0.180
  109. 1001 2 10 1739.694 0 0.000 -0.091 1.091 0.000 infeasible
  110. 1010 2 10 1773.848 0 0.000 0.449 0.000 0.551
  111. 1100 2 10 532.765 0 0.000 0.000 0.974 0.026
  112. 0111 3 11 291.466 0 1.000 0.000 0.000 0.000
  113. 1011 3 11 1491.041 0 0.000 1.000 0.000 0.000
  114. 1101 3 11 534.337 0 0.000 0.000 1.000 0.000
  115. 1110 3 11 1909.996 0 0.000 0.000 0.000 1.000
  116. best pat: 0000 0.815742 - -
  117. best pat: 0100 0.0146475 chi(nested): 16.144 p-value for nested model: 5.86978e-05
  118. best pat: 0101 1.46809e-11 chi(nested): 51.900 p-value for nested model: 5.83956e-13
  119. best pat: 0111 5.49122e-56 chi(nested): 218.985 p-value for nested model: 1.50593e-49
  120.  
  121. coeffs: 0.518 0.104 0.283 0.095
  122.  
  123. ## dscore:: f_4(Base, Fit, Rbase, right2)
  124. ## genstat:: f_4(Base, Fit, right1, right2)
  125.  
  126. details: Azerbaijan_Caucasus_lowlands_LN Turkey_N 0.002313 8.332657
  127. details: IVCp Turkey_N -0.005840 -25.061014
  128. details: Uzbekistan_Bustan_BA Turkey_N -0.001677 -8.626256
  129. details: Russia_Steppe_Catacomb Turkey_N -0.000859 -3.848530
  130. dscore: Turkey_N f4: 0.000036 Z: 0.193331
  131.  
  132. details: Azerbaijan_Caucasus_lowlands_LN Russia_MLBA_Sintashta 0.000280 1.140488
  133. details: IVCp Russia_MLBA_Sintashta -0.003678 -16.556549
  134. details: Uzbekistan_Bustan_BA Russia_MLBA_Sintashta -0.000524 -2.863776
  135. details: Russia_Steppe_Catacomb Russia_MLBA_Sintashta 0.004134 18.692616
  136. dscore: Russia_MLBA_Sintashta f4: 0.000010 Z: 0.059650
  137.  
  138. details: Azerbaijan_Caucasus_lowlands_LN ONG.SG -0.001341 -4.453468
  139. details: IVCp ONG.SG 0.003497 13.842543
  140. details: Uzbekistan_Bustan_BA ONG.SG 0.000861 3.968823
  141. details: Russia_Steppe_Catacomb ONG.SG 0.000910 3.642785
  142. dscore: ONG.SG f4: -0.000001 Z: -0.007368
  143.  
  144. details: Azerbaijan_Caucasus_lowlands_LN Tarim_EMBA1 -0.002029 -6.052736
  145. details: IVCp Tarim_EMBA1 0.000831 3.012681
  146. details: Uzbekistan_Bustan_BA Tarim_EMBA1 0.001298 5.385240
  147. details: Russia_Steppe_Catacomb Tarim_EMBA1 0.007306 23.961542
  148. dscore: Tarim_EMBA1 f4: 0.000100 Z: 0.454564
  149.  
  150. details: Azerbaijan_Caucasus_lowlands_LN PPN 0.002290 7.242309
  151. details: IVCp PPN -0.005259 -19.852717
  152. details: Uzbekistan_Bustan_BA PPN -0.001706 -7.400786
  153. details: Russia_Steppe_Catacomb PPN -0.001043 -4.048342
  154. dscore: PPN f4: 0.000058 Z: 0.278413
  155.  
  156. details: Azerbaijan_Caucasus_lowlands_LN Russia_Samara_EBA_Yamnaya -0.000592 -2.208014
  157. details: IVCp Russia_Samara_EBA_Yamnaya -0.002811 -12.404014
  158. details: Uzbekistan_Bustan_BA Russia_Samara_EBA_Yamnaya 0.000002 0.012320
  159. details: Russia_Steppe_Catacomb Russia_Samara_EBA_Yamnaya 0.005942 24.071245
  160. dscore: Russia_Samara_EBA_Yamnaya f4: -0.000031 Z: -0.169606
  161.  
  162. details: Azerbaijan_Caucasus_lowlands_LN CHG 0.000341 0.947528
  163. details: IVCp CHG -0.002693 -9.397743
  164. details: Uzbekistan_Bustan_BA CHG 0.000876 3.532816
  165. details: Russia_Steppe_Catacomb CHG 0.001253 4.342948
  166. dscore: CHG f4: 0.000265 Z: 1.138258
  167.  
  168. details: Azerbaijan_Caucasus_lowlands_LN EHG -0.001089 -3.263035
  169. details: IVCp EHG -0.001746 -6.389795
  170. details: Uzbekistan_Bustan_BA EHG 0.000249 1.048744
  171. details: Russia_Steppe_Catacomb EHG 0.007949 26.509537
  172. dscore: EHG f4: 0.000084 Z: 0.378175
  173.  
  174. details: Azerbaijan_Caucasus_lowlands_LN Iran_HajjiFiruz_N 0.000817 2.459928
  175. details: IVCp Iran_HajjiFiruz_N -0.003965 -14.878386
  176. details: Uzbekistan_Bustan_BA Iran_HajjiFiruz_N 0.000088 0.373056
  177. details: Russia_Steppe_Catacomb Iran_HajjiFiruz_N -0.000873 -3.190181
  178. dscore: Iran_HajjiFiruz_N f4: -0.000046 Z: -0.212877
  179.  
  180. details: Azerbaijan_Caucasus_lowlands_LN Serbia_IronGates_Mesolithic 0.000332 1.165235
  181. details: IVCp Serbia_IronGates_Mesolithic -0.003512 -13.479323
  182. details: Uzbekistan_Bustan_BA Serbia_IronGates_Mesolithic -0.000986 -4.657425
  183. details: Russia_Steppe_Catacomb Serbia_IronGates_Mesolithic 0.005844 21.318006
  184. dscore: Serbia_IronGates_Mesolithic f4: 0.000086 Z: 0.448068
  185.  
  186. details: Azerbaijan_Caucasus_lowlands_LN Iran_GanjDareh_N -0.000919 -3.118609
  187. details: IVCp Iran_GanjDareh_N -0.001056 -4.410789
  188. details: Uzbekistan_Bustan_BA Iran_GanjDareh_N 0.002465 11.496739
  189. details: Russia_Steppe_Catacomb Iran_GanjDareh_N -0.000913 -3.698971
  190. dscore: Iran_GanjDareh_N f4: 0.000024 Z: 0.125253
  191.  
  192. gendstat: Mbuti.DG Turkey_N 0.193
  193. gendstat: Mbuti.DG Russia_MLBA_Sintashta 0.060
  194. gendstat: Mbuti.DG ONG.SG -0.007
  195. gendstat: Mbuti.DG Tarim_EMBA1 0.455
  196. gendstat: Mbuti.DG PPN 0.278
  197. gendstat: Mbuti.DG Russia_Samara_EBA_Yamnaya -0.170
  198. gendstat: Mbuti.DG CHG 1.138
  199. gendstat: Mbuti.DG EHG 0.378
  200. gendstat: Mbuti.DG Iran_HajjiFiruz_N -0.213
  201. gendstat: Mbuti.DG Serbia_IronGates_Mesolithic 0.448
  202. gendstat: Mbuti.DG Iran_GanjDareh_N 0.125
  203. gendstat: Turkey_N Russia_MLBA_Sintashta -0.236
  204. gendstat: Turkey_N ONG.SG -0.188
  205. gendstat: Turkey_N Tarim_EMBA1 0.299
  206. gendstat: Turkey_N PPN 0.161
  207. gendstat: Turkey_N Russia_Samara_EBA_Yamnaya -0.447
  208. gendstat: Turkey_N CHG 1.091
  209. gendstat: Turkey_N EHG 0.252
  210. gendstat: Turkey_N Iran_HajjiFiruz_N -0.465
  211. gendstat: Turkey_N Serbia_IronGates_Mesolithic 0.357
  212. gendstat: Turkey_N Iran_GanjDareh_N -0.062
  213. gendstat: Russia_MLBA_Sintashta ONG.SG -0.063
  214. gendstat: Russia_MLBA_Sintashta Tarim_EMBA1 0.507
  215. gendstat: Russia_MLBA_Sintashta PPN 0.307
  216. gendstat: Russia_MLBA_Sintashta Russia_Samara_EBA_Yamnaya -0.394
  217. gendstat: Russia_MLBA_Sintashta CHG 1.356
  218. gendstat: Russia_MLBA_Sintashta EHG 0.450
  219. gendstat: Russia_MLBA_Sintashta Iran_HajjiFiruz_N -0.323
  220. gendstat: Russia_MLBA_Sintashta Serbia_IronGates_Mesolithic 0.670
  221. gendstat: Russia_MLBA_Sintashta Iran_GanjDareh_N 0.090
  222. gendstat: ONG.SG Tarim_EMBA1 0.460
  223. gendstat: ONG.SG PPN 0.267
  224. gendstat: ONG.SG Russia_Samara_EBA_Yamnaya -0.157
  225. gendstat: ONG.SG CHG 1.124
  226. gendstat: ONG.SG EHG 0.379
  227. gendstat: ONG.SG Iran_HajjiFiruz_N -0.202
  228. gendstat: ONG.SG Serbia_IronGates_Mesolithic 0.452
  229. gendstat: ONG.SG Iran_GanjDareh_N 0.126
  230. gendstat: Tarim_EMBA1 PPN -0.169
  231. gendstat: Tarim_EMBA1 Russia_Samara_EBA_Yamnaya -0.750
  232. gendstat: Tarim_EMBA1 CHG 0.656
  233. gendstat: Tarim_EMBA1 EHG -0.080
  234. gendstat: Tarim_EMBA1 Iran_HajjiFiruz_N -0.620
  235. gendstat: Tarim_EMBA1 Serbia_IronGates_Mesolithic -0.065
  236. gendstat: Tarim_EMBA1 Iran_GanjDareh_N -0.346
  237. gendstat: PPN Russia_Samara_EBA_Yamnaya -0.474
  238. gendstat: PPN CHG 0.850
  239. gendstat: PPN EHG 0.116
  240. gendstat: PPN Iran_HajjiFiruz_N -0.507
  241. gendstat: PPN Serbia_IronGates_Mesolithic 0.154
  242. gendstat: PPN Iran_GanjDareh_N -0.159
  243. gendstat: Russia_Samara_EBA_Yamnaya CHG 1.474
  244. gendstat: Russia_Samara_EBA_Yamnaya EHG 0.684
  245. gendstat: Russia_Samara_EBA_Yamnaya Iran_HajjiFiruz_N -0.081
  246. gendstat: Russia_Samara_EBA_Yamnaya Serbia_IronGates_Mesolithic 0.867
  247. gendstat: Russia_Samara_EBA_Yamnaya Iran_GanjDareh_N 0.328
  248. gendstat: CHG EHG -0.736
  249. gendstat: CHG Iran_HajjiFiruz_N -1.338
  250. gendstat: CHG Serbia_IronGates_Mesolithic -0.833
  251. gendstat: CHG Iran_GanjDareh_N -1.116
  252. gendstat: EHG Iran_HajjiFiruz_N -0.551
  253. gendstat: EHG Serbia_IronGates_Mesolithic 0.015
  254. gendstat: EHG Iran_GanjDareh_N -0.283
  255. gendstat: Iran_HajjiFiruz_N Serbia_IronGates_Mesolithic 0.675
  256. gendstat: Iran_HajjiFiruz_N Iran_GanjDareh_N 0.349
  257. gendstat: Serbia_IronGates_Mesolithic Iran_GanjDareh_N -0.331
  258.  
  259. ##end of qpAdm: 33.195 seconds cpu 1.290 Mbytes in use
  260.  
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