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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- S1: anatolia
- indivname: anatolia.ind
- snpname: anatolia.snp
- genotypename: anatolia.geno
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- ## qpAdm version: 1520
- seed: 1847621449
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.3247
- left pops:
- Turkey_TellKurdu_EC
- Turkey_N
- PPN
- Iran_HajjiFiruz_C
- right pops:
- Mbuti.DG
- ONG.SG
- EHG
- CHG
- England_Mesolithic
- Morocco_Iberomaurusian
- IVC
- WSHG
- Tarim_EMBA1
- Israel_Natufian_published
- Spain_ElMiron
- Mongolia_North_N
- Turkey_Epipaleolithic
- codimension 1
- f4info:
- f4rank: 2 dof: 10 chisq: 11.583 tail: 0.313929499 dofdiff: 12 chisqdiff: -11.583 taildiff: 1
- B:
- scale 1.000 1.000
- ONG.SG 0.662 0.545
- EHG 0.643 0.984
- CHG 1.349 0.393
- England_Mesolithic -0.109 1.315
- Morocco_Iberomaurusian -1.257 0.030
- IVC 0.970 0.031
- WSHG 0.806 0.499
- Tarim_EMBA1 1.009 0.396
- Israel_Natufian_published -2.096 -0.112
- Spain_ElMiron -0.176 1.247
- Mongolia_North_N 0.510 0.415
- Turkey_Epipaleolithic -0.668 2.589
- A:
- scale 208.650 265.494
- Turkey_N 0.101 0.895
- PPN -1.109 -1.067
- Iran_HajjiFiruz_C 1.327 -1.030
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 11.583 taildiff: 0.313929499
- B:
- scale 278.101 148.691 133.199
- ONG.SG 0.361 -0.984 0.124
- EHG 1.073 -1.087 0.037
- CHG 0.627 -1.269 0.936
- England_Mesolithic 1.000 -0.841 -0.931
- Morocco_Iberomaurusian -0.022 1.015 -1.059
- IVC -0.087 -0.927 0.639
- WSHG 0.889 -0.770 0.568
- Tarim_EMBA1 0.777 -0.902 0.777
- Israel_Natufian_published -0.578 1.580 -1.895
- Spain_ElMiron 1.252 -0.551 -0.766
- Mongolia_North_N 0.398 -0.684 0.145
- Turkey_Epipaleolithic 2.422 -0.984 -1.893
- A:
- scale 1.732 1.732 1.732
- Turkey_N 1.732 0.000 0.000
- PPN 0.000 1.732 0.000
- Iran_HajjiFiruz_C 0.000 0.000 1.732
- best coefficients: 0.540 0.273 0.187
- totmean: 0.540 0.273 0.187
- boot mean: 0.540 0.273 0.187
- std. errors: 0.054 0.038 0.035
- error covariance (* 1,000,000)
- 2960 -1617 -1343
- -1617 1479 138
- -1343 138 1205
- summ: Turkey_TellKurdu_EC 3 0.313929 0.540 0.273 0.187 2960 -1617 -1343 1479 138 ...
- 1205
- fixed pat wt dof chisq tail prob
- 000 0 10 11.583 0.313929 0.540 0.273 0.187
- 001 1 11 42.063 1.57937e-05 0.749 0.251 0.000
- 010 1 11 61.267 5.38834e-09 0.835 0.000 0.165
- 100 1 11 86.049 9.87065e-14 0.000 0.556 0.444
- 011 2 12 81.979 1.72793e-12 1.000 0.000 0.000
- 101 2 12 249.736 0 0.000 1.000 0.000
- 110 2 12 270.909 0 0.000 0.000 1.000
- best pat: 000 0.313929 - -
- best pat: 001 1.57937e-05 chi(nested): 30.480 p-value for nested model: 3.37286e-08
- best pat: 011 1.72793e-12 chi(nested): 39.916 p-value for nested model: 2.65117e-10
- coeffs: 0.540 0.273 0.187
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_N ONG.SG 0.001297 1.499881
- details: PPN ONG.SG -0.006615 -6.344169
- details: Iran_HajjiFiruz_C ONG.SG 0.000933 0.788542
- dscore: ONG.SG f4: -0.000929 Z: -1.098169
- details: Turkey_N EHG 0.003857 3.771513
- details: PPN EHG -0.007312 -5.916922
- details: Iran_HajjiFiruz_C EHG 0.000278 0.191755
- dscore: EHG f4: 0.000142 Z: 0.141082
- details: Turkey_N CHG 0.002254 2.227943
- details: PPN CHG -0.008533 -7.271487
- details: Iran_HajjiFiruz_C CHG 0.007029 5.091262
- dscore: CHG f4: 0.000205 Z: 0.212572
- details: Turkey_N England_Mesolithic 0.003595 3.108294
- details: PPN England_Mesolithic -0.005656 -3.956122
- details: Iran_HajjiFiruz_C England_Mesolithic -0.006993 -4.124767
- dscore: England_Mesolithic f4: -0.000907 Z: -0.787361
- details: Turkey_N Morocco_Iberomaurusian -0.000080 -0.097605
- details: PPN Morocco_Iberomaurusian 0.006825 6.778371
- details: Iran_HajjiFiruz_C Morocco_Iberomaurusian -0.007954 -6.902983
- dscore: Morocco_Iberomaurusian f4: 0.000331 Z: 0.417272
- details: Turkey_N IVC -0.000311 -0.374755
- details: PPN IVC -0.006234 -6.339124
- details: Iran_HajjiFiruz_C IVC 0.004796 4.300187
- dscore: IVC f4: -0.000972 Z: -1.228203
- details: Turkey_N WSHG 0.003197 3.193726
- details: PPN WSHG -0.005179 -4.308740
- details: Iran_HajjiFiruz_C WSHG 0.004261 3.064430
- dscore: WSHG f4: 0.001111 Z: 1.152880
- details: Turkey_N Tarim_EMBA1 0.002792 2.953350
- details: PPN Tarim_EMBA1 -0.006065 -5.221063
- details: Iran_HajjiFiruz_C Tarim_EMBA1 0.005832 4.573247
- dscore: Tarim_EMBA1 f4: 0.000945 Z: 1.026348
- details: Turkey_N Israel_Natufian_published -0.002077 -1.255154
- details: PPN Israel_Natufian_published 0.010627 5.493812
- details: Iran_HajjiFiruz_C Israel_Natufian_published -0.014230 -6.436026
- dscore: Israel_Natufian_published f4: -0.000884 Z: -0.539927
- details: Turkey_N Spain_ElMiron 0.004501 3.698898
- details: PPN Spain_ElMiron -0.003707 -2.425751
- details: Iran_HajjiFiruz_C Spain_ElMiron -0.005751 -3.271797
- dscore: Spain_ElMiron f4: 0.000347 Z: 0.283539
- details: Turkey_N Mongolia_North_N 0.001431 1.614234
- details: PPN Mongolia_North_N -0.004603 -4.284300
- details: Iran_HajjiFiruz_C Mongolia_North_N 0.001092 0.923202
- dscore: Mongolia_North_N f4: -0.000278 Z: -0.323476
- details: Turkey_N Turkey_Epipaleolithic 0.008709 7.088320
- details: PPN Turkey_Epipaleolithic -0.006619 -4.335844
- details: Iran_HajjiFiruz_C Turkey_Epipaleolithic -0.014209 -8.152255
- dscore: Turkey_Epipaleolithic f4: 0.000246 Z: 0.203486
- gendstat: Mbuti.DG ONG.SG -1.098
- gendstat: Mbuti.DG EHG 0.141
- gendstat: Mbuti.DG CHG 0.213
- gendstat: Mbuti.DG England_Mesolithic -0.787
- gendstat: Mbuti.DG Morocco_Iberomaurusian 0.417
- gendstat: Mbuti.DG IVC -1.228
- gendstat: Mbuti.DG WSHG 1.153
- gendstat: Mbuti.DG Tarim_EMBA1 1.026
- gendstat: Mbuti.DG Israel_Natufian_published -0.540
- gendstat: Mbuti.DG Spain_ElMiron 0.284
- gendstat: Mbuti.DG Mongolia_North_N -0.323
- gendstat: Mbuti.DG Turkey_Epipaleolithic 0.203
- gendstat: ONG.SG EHG 1.093
- gendstat: ONG.SG CHG 1.140
- gendstat: ONG.SG England_Mesolithic 0.020
- gendstat: ONG.SG Morocco_Iberomaurusian 1.364
- gendstat: ONG.SG IVC -0.055
- gendstat: ONG.SG WSHG 2.166
- gendstat: ONG.SG Tarim_EMBA1 2.224
- gendstat: ONG.SG Israel_Natufian_published 0.027
- gendstat: ONG.SG Spain_ElMiron 1.047
- gendstat: ONG.SG Mongolia_North_N 0.839
- gendstat: ONG.SG Turkey_Epipaleolithic 0.979
- gendstat: EHG CHG 0.058
- gendstat: EHG England_Mesolithic -0.953
- gendstat: EHG Morocco_Iberomaurusian 0.188
- gendstat: EHG IVC -1.179
- gendstat: EHG WSHG 1.055
- gendstat: EHG Tarim_EMBA1 0.953
- gendstat: EHG Israel_Natufian_published -0.600
- gendstat: EHG Spain_ElMiron 0.163
- gendstat: EHG Mongolia_North_N -0.453
- gendstat: EHG Turkey_Epipaleolithic 0.082
- gendstat: CHG England_Mesolithic -0.921
- gendstat: CHG Morocco_Iberomaurusian 0.123
- gendstat: CHG IVC -1.279
- gendstat: CHG WSHG 0.873
- gendstat: CHG Tarim_EMBA1 0.715
- gendstat: CHG Israel_Natufian_published -0.640
- gendstat: CHG Spain_ElMiron 0.111
- gendstat: CHG Mongolia_North_N -0.483
- gendstat: CHG Turkey_Epipaleolithic 0.033
- gendstat: England_Mesolithic Morocco_Iberomaurusian 1.086
- gendstat: England_Mesolithic IVC -0.059
- gendstat: England_Mesolithic WSHG 1.792
- gendstat: England_Mesolithic Tarim_EMBA1 1.685
- gendstat: England_Mesolithic Israel_Natufian_published 0.013
- gendstat: England_Mesolithic Spain_ElMiron 0.983
- gendstat: England_Mesolithic Mongolia_North_N 0.568
- gendstat: England_Mesolithic Turkey_Epipaleolithic 0.844
- gendstat: Morocco_Iberomaurusian IVC -1.477
- gendstat: Morocco_Iberomaurusian WSHG 0.767
- gendstat: Morocco_Iberomaurusian Tarim_EMBA1 0.645
- gendstat: Morocco_Iberomaurusian Israel_Natufian_published -0.746
- gendstat: Morocco_Iberomaurusian Spain_ElMiron 0.013
- gendstat: Morocco_Iberomaurusian Mongolia_North_N -0.681
- gendstat: Morocco_Iberomaurusian Turkey_Epipaleolithic -0.069
- gendstat: IVC WSHG 2.263
- gendstat: IVC Tarim_EMBA1 2.299
- gendstat: IVC Israel_Natufian_published 0.054
- gendstat: IVC Spain_ElMiron 1.099
- gendstat: IVC Mongolia_North_N 0.853
- gendstat: IVC Turkey_Epipaleolithic 0.998
- gendstat: WSHG Tarim_EMBA1 -0.207
- gendstat: WSHG Israel_Natufian_published -1.196
- gendstat: WSHG Spain_ElMiron -0.622
- gendstat: WSHG Mongolia_North_N -1.500
- gendstat: WSHG Turkey_Epipaleolithic -0.682
- gendstat: Tarim_EMBA1 Israel_Natufian_published -1.094
- gendstat: Tarim_EMBA1 Spain_ElMiron -0.505
- gendstat: Tarim_EMBA1 Mongolia_North_N -1.465
- gendstat: Tarim_EMBA1 Turkey_Epipaleolithic -0.570
- gendstat: Israel_Natufian_published Spain_ElMiron 0.659
- gendstat: Israel_Natufian_published Mongolia_North_N 0.362
- gendstat: Israel_Natufian_published Turkey_Epipaleolithic 0.616
- gendstat: Spain_ElMiron Mongolia_North_N -0.522
- gendstat: Spain_ElMiron Turkey_Epipaleolithic -0.073
- gendstat: Mongolia_North_N Turkey_Epipaleolithic 0.428
- removing /tmp/fsx.3247
- ##end of qpAdm: 9.652 seconds cpu 1.040 Mbytes in use
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