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- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: /home/dosas/host/dosasHO/fstatsa.txt
- popleft: /home/dosas/host/dosasHO/left.txt
- popright: /home/dosas/host/dosasHO/right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1801501484
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- Turkish_Trabzon
- Turkey_Ikiztepe_LateC
- Russia_DevilsCave_N.SG
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Israel_Natufian
- ONG.SG
- codimension 1
- f4info:
- f4rank: 1 dof: 10 chisq: 19.683 tail: 0.0323940668 dofdiff: 12 chisqdiff: -19.683 taildiff: 1
- B:
- scale 1.000
- Russia_Ust_Ishim.DG 0.488
- China_Tianyuan 1.679
- Goyet_Neanderthal.SG 0.237
- Russia_Sunghir3.SG -0.396
- Russia_Kostenki14.SG -0.373
- Russia_MA1_HG.SG -0.349
- Georgia_Satsurblia.SG -1.336
- Papuan.DG 1.270
- Switzerland_Bichon.SG -0.814
- Israel_Natufian -1.191
- ONG.SG 1.410
- A:
- scale 219.255
- Turkey_Ikiztepe_LateC -0.035
- Russia_DevilsCave_N.SG 1.414
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 19.683 taildiff: 0.0323940668
- B:
- scale 1635.546 155.799
- Russia_Ust_Ishim.DG -0.015 0.489
- China_Tianyuan 0.231 1.682
- Goyet_Neanderthal.SG 0.821 0.246
- Russia_Sunghir3.SG 0.014 -0.390
- Russia_Kostenki14.SG 0.348 -0.368
- Russia_MA1_HG.SG 0.395 -0.366
- Georgia_Satsurblia.SG -0.515 -1.347
- Papuan.DG -0.715 1.259
- Switzerland_Bichon.SG -0.716 -0.851
- Israel_Natufian 2.858 -1.175
- ONG.SG -0.733 1.395
- A:
- scale 1.414 1.414
- Turkey_Ikiztepe_LateC 1.414 0.000
- Russia_DevilsCave_N.SG 0.000 1.414
- best coefficients: 0.976 0.024
- totmean: 0.976 0.024
- boot mean: 0.976 0.024
- std. errors: 0.017 0.017
- error covariance (* 1,000,000)
- 278 -278
- -278 278
- summ: Turkish_Trabzon 2 0.032394 0.976 0.024 278 -278 278
- fixed pat wt dof chisq tail prob
- 00 0 10 19.683 0.0323941 0.976 0.024
- 01 1 11 21.969 0.0246172 1.000 0.000
- 10 1 11 1848.097 0 0.000 1.000
- best pat: 00 0.0323941 - -
- best pat: 01 0.0246172 chi(nested): 2.285 p-value for nested model: 0.130604
- coeffs: 0.976 0.024
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_Ikiztepe_LateC Russia_Ust_Ishim.DG -0.000009 -0.029268
- details: Russia_DevilsCave_N.SG Russia_Ust_Ishim.DG 0.003139 5.812522
- dscore: Russia_Ust_Ishim.DG f4: 0.000066 Z: 0.210110
- details: Turkey_Ikiztepe_LateC China_Tianyuan 0.000141 0.356507
- details: Russia_DevilsCave_N.SG China_Tianyuan 0.010797 20.678823
- dscore: China_Tianyuan f4: 0.000398 Z: 1.024276
- details: Turkey_Ikiztepe_LateC Goyet_Neanderthal.SG 0.000502 1.417889
- details: Russia_DevilsCave_N.SG Goyet_Neanderthal.SG 0.001580 3.875795
- dscore: Goyet_Neanderthal.SG f4: 0.000528 Z: 1.525324
- details: Turkey_Ikiztepe_LateC Russia_Sunghir3.SG 0.000009 0.021668
- details: Russia_DevilsCave_N.SG Russia_Sunghir3.SG -0.002503 -4.683399
- dscore: Russia_Sunghir3.SG f4: -0.000052 Z: -0.129255
- details: Turkey_Ikiztepe_LateC Russia_Kostenki14.SG 0.000213 0.527163
- details: Russia_DevilsCave_N.SG Russia_Kostenki14.SG -0.002362 -4.631582
- dscore: Russia_Kostenki14.SG f4: 0.000151 Z: 0.381071
- details: Turkey_Ikiztepe_LateC Russia_MA1_HG.SG 0.000242 0.566353
- details: Russia_DevilsCave_N.SG Russia_MA1_HG.SG -0.002347 -4.278981
- dscore: Russia_MA1_HG.SG f4: 0.000179 Z: 0.427939
- details: Turkey_Ikiztepe_LateC Georgia_Satsurblia.SG -0.000315 -0.695057
- details: Russia_DevilsCave_N.SG Georgia_Satsurblia.SG -0.008646 -16.947014
- dscore: Georgia_Satsurblia.SG f4: -0.000515 Z: -1.162684
- details: Turkey_Ikiztepe_LateC Papuan.DG -0.000437 -1.534939
- details: Russia_DevilsCave_N.SG Papuan.DG 0.008079 19.435342
- dscore: Papuan.DG f4: -0.000232 Z: -0.832342
- details: Turkey_Ikiztepe_LateC Switzerland_Bichon.SG -0.000438 -1.085551
- details: Russia_DevilsCave_N.SG Switzerland_Bichon.SG -0.005460 -10.732845
- dscore: Switzerland_Bichon.SG f4: -0.000558 Z: -1.417976
- details: Turkey_Ikiztepe_LateC Israel_Natufian 0.001747 2.744105
- details: Russia_DevilsCave_N.SG Israel_Natufian -0.007543 -12.299334
- dscore: Israel_Natufian f4: 0.001524 Z: 2.445869
- details: Turkey_Ikiztepe_LateC ONG.SG -0.000448 -1.433820
- details: Russia_DevilsCave_N.SG ONG.SG 0.008953 21.589657
- dscore: ONG.SG f4: -0.000222 Z: -0.724470
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.210
- gendstat: Mbuti.DG China_Tianyuan 1.024
- gendstat: Mbuti.DG Goyet_Neanderthal.SG 1.525
- gendstat: Mbuti.DG Russia_Sunghir3.SG -0.129
- gendstat: Mbuti.DG Russia_Kostenki14.SG 0.381
- gendstat: Mbuti.DG Russia_MA1_HG.SG 0.428
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.163
- gendstat: Mbuti.DG Papuan.DG -0.832
- gendstat: Mbuti.DG Switzerland_Bichon.SG -1.418
- gendstat: Mbuti.DG Israel_Natufian 2.446
- gendstat: Mbuti.DG ONG.SG -0.724
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.819
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 1.072
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.290
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.208
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.250
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -1.274
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.979
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -1.471
- gendstat: Russia_Ust_Ishim.DG Israel_Natufian 2.335
- gendstat: Russia_Ust_Ishim.DG ONG.SG -0.841
- gendstat: China_Tianyuan Goyet_Neanderthal.SG 0.277
- gendstat: China_Tianyuan Russia_Sunghir3.SG -0.998
- gendstat: China_Tianyuan Russia_Kostenki14.SG -0.541
- gendstat: China_Tianyuan Russia_MA1_HG.SG -0.453
- gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.812
- gendstat: China_Tianyuan Papuan.DG -1.780
- gendstat: China_Tianyuan Switzerland_Bichon.SG -2.089
- gendstat: China_Tianyuan Israel_Natufian 1.670
- gendstat: China_Tianyuan ONG.SG -1.665
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG -1.198
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -0.794
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.675
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG -1.999
- gendstat: Goyet_Neanderthal.SG Papuan.DG -1.878
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG -2.276
- gendstat: Goyet_Neanderthal.SG Israel_Natufian 1.433
- gendstat: Goyet_Neanderthal.SG ONG.SG -1.757
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.467
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 0.483
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.930
- gendstat: Russia_Sunghir3.SG Papuan.DG -0.480
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.120
- gendstat: Russia_Sunghir3.SG Israel_Natufian 2.364
- gendstat: Russia_Sunghir3.SG ONG.SG -0.410
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG 0.056
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -1.331
- gendstat: Russia_Kostenki14.SG Papuan.DG -1.016
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.572
- gendstat: Russia_Kostenki14.SG Israel_Natufian 2.081
- gendstat: Russia_Kostenki14.SG ONG.SG -0.913
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -1.347
- gendstat: Russia_MA1_HG.SG Papuan.DG -1.000
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -1.501
- gendstat: Russia_MA1_HG.SG Israel_Natufian 1.926
- gendstat: Russia_MA1_HG.SG ONG.SG -0.936
- gendstat: Georgia_Satsurblia.SG Papuan.DG 0.665
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.086
- gendstat: Georgia_Satsurblia.SG Israel_Natufian 3.011
- gendstat: Georgia_Satsurblia.SG ONG.SG 0.645
- gendstat: Papuan.DG Switzerland_Bichon.SG -0.836
- gendstat: Papuan.DG Israel_Natufian 2.863
- gendstat: Papuan.DG ONG.SG 0.038
- gendstat: Switzerland_Bichon.SG Israel_Natufian 3.105
- gendstat: Switzerland_Bichon.SG ONG.SG 0.824
- gendstat: Israel_Natufian ONG.SG -2.746
- ##end of qpAdm: 1.551 seconds cpu 0.680 Mbytes in use
- ---------------------------------------------------------------------------
- qpAdm: parameter file: parqpadm.txt
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- fstatsname: /home/dosas/host/dosasHO/fstatsa.txt
- popleft: /home/dosas/host/dosasHO/left.txt
- popright: /home/dosas/host/dosasHO/right.txt
- details: YES
- ## qpAdm version: 1520
- seed: 1772822804
- *** recommended that inbreed be explicitly set ***
- inbreed set NO
- left pops:
- Turkish_Trabzon
- Turkey_Ikiztepe_LateC
- Kazakhstan_Karluk_2.SG
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- China_Tianyuan
- Goyet_Neanderthal.SG
- Russia_Sunghir3.SG
- Russia_Kostenki14.SG
- Russia_MA1_HG.SG
- Georgia_Satsurblia.SG
- Papuan.DG
- Switzerland_Bichon.SG
- Israel_Natufian
- ONG.SG
- codimension 1
- f4info:
- f4rank: 1 dof: 10 chisq: 19.609 tail: 0.033180581 dofdiff: 12 chisqdiff: -19.609 taildiff: 1
- B:
- scale 1.000
- Russia_Ust_Ishim.DG 0.566
- China_Tianyuan 1.670
- Goyet_Neanderthal.SG 0.152
- Russia_Sunghir3.SG -0.393
- Russia_Kostenki14.SG -0.161
- Russia_MA1_HG.SG 0.211
- Georgia_Satsurblia.SG -1.153
- Papuan.DG 1.237
- Switzerland_Bichon.SG -0.614
- Israel_Natufian -1.685
- ONG.SG 1.252
- A:
- scale 449.183
- Turkey_Ikiztepe_LateC -0.091
- Kazakhstan_Karluk_2.SG 1.411
- full rank
- f4info:
- f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 19.609 taildiff: 0.033180581
- B:
- scale 1520.399 317.921
- Russia_Ust_Ishim.DG -0.022 0.607
- China_Tianyuan 0.176 1.746
- Goyet_Neanderthal.SG 0.899 0.187
- Russia_Sunghir3.SG 0.046 -0.369
- Russia_Kostenki14.SG 0.309 -0.126
- Russia_MA1_HG.SG 0.295 0.264
- Georgia_Satsurblia.SG -0.501 -1.179
- Papuan.DG -0.685 1.192
- Switzerland_Bichon.SG -0.711 -0.652
- Israel_Natufian 2.867 -1.603
- ONG.SG -0.729 1.234
- A:
- scale 1.414 1.414
- Turkey_Ikiztepe_LateC 1.414 0.000
- Kazakhstan_Karluk_2.SG 0.000 1.414
- best coefficients: 0.939 0.061
- totmean: 0.939 0.061
- boot mean: 0.940 0.060
- std. errors: 0.038 0.038
- error covariance (* 1,000,000)
- 1456 -1456
- -1456 1456
- summ: Turkish_Trabzon 2 0.033181 0.940 0.060 1456 -1456 1456
- fixed pat wt dof chisq tail prob
- 00 0 10 19.609 0.0331806 0.939 0.061
- 01 1 11 22.586 0.0202056 1.000 0.000
- 10 1 11 279.574 0 0.000 1.000
- best pat: 00 0.0331806 - -
- best pat: 01 0.0202056 chi(nested): 2.978 p-value for nested model: 0.0844208
- coeffs: 0.939 0.061
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: Turkey_Ikiztepe_LateC Russia_Ust_Ishim.DG -0.000015 -0.043950
- details: Kazakhstan_Karluk_2.SG Russia_Ust_Ishim.DG 0.001909 3.606134
- dscore: Russia_Ust_Ishim.DG f4: 0.000102 Z: 0.318560
- details: Turkey_Ikiztepe_LateC China_Tianyuan 0.000116 0.281463
- details: Kazakhstan_Karluk_2.SG China_Tianyuan 0.005491 8.793921
- dscore: China_Tianyuan f4: 0.000443 Z: 1.130920
- details: Turkey_Ikiztepe_LateC Goyet_Neanderthal.SG 0.000592 1.623810
- details: Kazakhstan_Karluk_2.SG Goyet_Neanderthal.SG 0.000588 1.247121
- dscore: Goyet_Neanderthal.SG f4: 0.000591 Z: 1.713640
- details: Turkey_Ikiztepe_LateC Russia_Sunghir3.SG 0.000030 0.071267
- details: Kazakhstan_Karluk_2.SG Russia_Sunghir3.SG -0.001160 -2.021461
- dscore: Russia_Sunghir3.SG f4: -0.000042 Z: -0.105727
- details: Turkey_Ikiztepe_LateC Russia_Kostenki14.SG 0.000203 0.489628
- details: Kazakhstan_Karluk_2.SG Russia_Kostenki14.SG -0.000396 -0.675746
- dscore: Russia_Kostenki14.SG f4: 0.000167 Z: 0.420391
- details: Turkey_Ikiztepe_LateC Russia_MA1_HG.SG 0.000194 0.433957
- details: Kazakhstan_Karluk_2.SG Russia_MA1_HG.SG 0.000830 1.270903
- dscore: Russia_MA1_HG.SG f4: 0.000233 Z: 0.546049
- details: Turkey_Ikiztepe_LateC Georgia_Satsurblia.SG -0.000329 -0.701784
- details: Kazakhstan_Karluk_2.SG Georgia_Satsurblia.SG -0.003707 -6.070539
- dscore: Georgia_Satsurblia.SG f4: -0.000535 Z: -1.204033
- details: Turkey_Ikiztepe_LateC Papuan.DG -0.000451 -1.540164
- details: Kazakhstan_Karluk_2.SG Papuan.DG 0.003749 8.166330
- dscore: Papuan.DG f4: -0.000195 Z: -0.695910
- details: Turkey_Ikiztepe_LateC Switzerland_Bichon.SG -0.000468 -1.120621
- details: Kazakhstan_Karluk_2.SG Switzerland_Bichon.SG -0.002050 -3.571102
- dscore: Switzerland_Bichon.SG f4: -0.000564 Z: -1.429916
- details: Turkey_Ikiztepe_LateC Israel_Natufian 0.001885 2.841668
- details: Kazakhstan_Karluk_2.SG Israel_Natufian -0.005044 -5.839246
- dscore: Israel_Natufian f4: 0.001464 Z: 2.324513
- details: Turkey_Ikiztepe_LateC ONG.SG -0.000479 -1.472551
- details: Kazakhstan_Karluk_2.SG ONG.SG 0.003881 8.185811
- dscore: ONG.SG f4: -0.000214 Z: -0.686443
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG 0.319
- gendstat: Mbuti.DG China_Tianyuan 1.131
- gendstat: Mbuti.DG Goyet_Neanderthal.SG 1.714
- gendstat: Mbuti.DG Russia_Sunghir3.SG -0.106
- gendstat: Mbuti.DG Russia_Kostenki14.SG 0.420
- gendstat: Mbuti.DG Russia_MA1_HG.SG 0.546
- gendstat: Mbuti.DG Georgia_Satsurblia.SG -1.204
- gendstat: Mbuti.DG Papuan.DG -0.696
- gendstat: Mbuti.DG Switzerland_Bichon.SG -1.430
- gendstat: Mbuti.DG Israel_Natufian 2.325
- gendstat: Mbuti.DG ONG.SG -0.686
- gendstat: Russia_Ust_Ishim.DG China_Tianyuan 0.841
- gendstat: Russia_Ust_Ishim.DG Goyet_Neanderthal.SG 1.124
- gendstat: Russia_Ust_Ishim.DG Russia_Sunghir3.SG -0.351
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 0.156
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.284
- gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG -1.388
- gendstat: Russia_Ust_Ishim.DG Papuan.DG -0.966
- gendstat: Russia_Ust_Ishim.DG Switzerland_Bichon.SG -1.568
- gendstat: Russia_Ust_Ishim.DG Israel_Natufian 2.165
- gendstat: Russia_Ust_Ishim.DG ONG.SG -0.916
- gendstat: China_Tianyuan Goyet_Neanderthal.SG 0.311
- gendstat: China_Tianyuan Russia_Sunghir3.SG -1.074
- gendstat: China_Tianyuan Russia_Kostenki14.SG -0.602
- gendstat: China_Tianyuan Russia_MA1_HG.SG -0.428
- gendstat: China_Tianyuan Georgia_Satsurblia.SG -1.920
- gendstat: China_Tianyuan Papuan.DG -1.772
- gendstat: China_Tianyuan Switzerland_Bichon.SG -2.180
- gendstat: China_Tianyuan Israel_Natufian 1.497
- gendstat: China_Tianyuan ONG.SG -1.737
- gendstat: Goyet_Neanderthal.SG Russia_Sunghir3.SG -1.294
- gendstat: Goyet_Neanderthal.SG Russia_Kostenki14.SG -0.889
- gendstat: Goyet_Neanderthal.SG Russia_MA1_HG.SG -0.690
- gendstat: Goyet_Neanderthal.SG Georgia_Satsurblia.SG -2.153
- gendstat: Goyet_Neanderthal.SG Papuan.DG -1.942
- gendstat: Goyet_Neanderthal.SG Switzerland_Bichon.SG -2.401
- gendstat: Goyet_Neanderthal.SG Israel_Natufian 1.241
- gendstat: Goyet_Neanderthal.SG ONG.SG -1.870
- gendstat: Russia_Sunghir3.SG Russia_Kostenki14.SG 0.482
- gendstat: Russia_Sunghir3.SG Russia_MA1_HG.SG 0.571
- gendstat: Russia_Sunghir3.SG Georgia_Satsurblia.SG -0.984
- gendstat: Russia_Sunghir3.SG Papuan.DG -0.403
- gendstat: Russia_Sunghir3.SG Switzerland_Bichon.SG -1.137
- gendstat: Russia_Sunghir3.SG Israel_Natufian 2.227
- gendstat: Russia_Sunghir3.SG ONG.SG -0.410
- gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG 0.128
- gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -1.394
- gendstat: Russia_Kostenki14.SG Papuan.DG -0.949
- gendstat: Russia_Kostenki14.SG Switzerland_Bichon.SG -1.609
- gendstat: Russia_Kostenki14.SG Israel_Natufian 1.941
- gendstat: Russia_Kostenki14.SG ONG.SG -0.914
- gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG -1.487
- gendstat: Russia_MA1_HG.SG Papuan.DG -1.024
- gendstat: Russia_MA1_HG.SG Switzerland_Bichon.SG -1.599
- gendstat: Russia_MA1_HG.SG Israel_Natufian 1.744
- gendstat: Russia_MA1_HG.SG ONG.SG -1.030
- gendstat: Georgia_Satsurblia.SG Papuan.DG 0.799
- gendstat: Georgia_Satsurblia.SG Switzerland_Bichon.SG -0.058
- gendstat: Georgia_Satsurblia.SG Israel_Natufian 2.905
- gendstat: Georgia_Satsurblia.SG ONG.SG 0.704
- gendstat: Papuan.DG Switzerland_Bichon.SG -0.945
- gendstat: Papuan.DG Israel_Natufian 2.667
- gendstat: Papuan.DG ONG.SG -0.069
- gendstat: Switzerland_Bichon.SG Israel_Natufian 2.982
- gendstat: Switzerland_Bichon.SG ONG.SG 0.850
- gendstat: Israel_Natufian ONG.SG -2.608
- ##end of qpAdm: 1.553 seconds cpu 0.729 Mbytes in use
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