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- qpAdm: parameter file: parqpadm
- ### THE INPUT PARAMETERS
- ##PARAMETER NAME: VALUE
- popleft: left
- popright: right
- details: YES
- allsnps: YES
- inbreed: NO
- oldallsnps: NO
- S1: newpush
- S1X: newpush
- indivname: newpush.ind
- snpname: newpush.snp
- genotypename: newpush.geno
- ## qpAdm version: 1520
- seed: 1101463947
- inbreed set NO
- inbreed set NO
- tmp: /tmp/fsx.18855
- left pops:
- Russia_Samara_EBA_Yamnaya
- EHG
- CHG
- Poland_Globular_Amphora
- right pops:
- Mbuti.DG
- Russia_Ust_Ishim.DG
- Russia_Kostenki14
- Russia_MA1_HG.SG
- Han.DG
- Papuan.DG
- ONG.SG
- Italy_North_Villabruna_HG
- Czech_Vestonice16
- Spain_ElMiron
- Ethiopia_4500BP_published.SG
- WSHG
- Karitiana.DG
- Turkey_N
- Iran_GanjDareh_N
- codimension 1
- f4info:
- f4rank: 2 dof: 12 chisq: 20.838 tail: 0.0527988588 dofdiff: 14 chisqdiff: -20.838 taildiff: 1
- B:
- scale 1.000 1.000
- Russia_Ust_Ishim.DG 0.211 0.025
- Russia_Kostenki14 0.533 0.435
- Russia_MA1_HG.SG 1.814 -0.678
- Han.DG 0.517 -0.245
- Papuan.DG 0.325 -0.050
- ONG.SG 0.366 -0.240
- Italy_North_Villabruna_HG 0.853 2.061
- Czech_Vestonice16 0.605 0.910
- Spain_ElMiron 0.642 1.545
- Ethiopia_4500BP_published.SG -0.035 0.017
- WSHG 2.431 -0.618
- Karitiana.DG 1.437 -0.712
- Turkey_N -0.530 2.027
- Iran_GanjDareh_N -0.336 -0.874
- A:
- scale 100.233 169.697
- EHG 1.179 0.306
- CHG -1.096 -0.731
- Poland_Globular_Amphora -0.638 1.540
- full rank
- f4info:
- f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 12 chisqdiff: 20.838 taildiff: 0.0527988588
- B:
- scale 93.205 73.588 84.050
- Russia_Ust_Ishim.DG 0.050 -0.350 -0.166
- Russia_Kostenki14 0.551 -0.749 -0.068
- Russia_MA1_HG.SG 1.682 -1.535 -1.648
- Han.DG 0.375 -0.548 -0.565
- Papuan.DG 0.207 -0.428 -0.322
- ONG.SG 0.177 -0.436 -0.507
- Italy_North_Villabruna_HG 1.133 -1.553 0.979
- Czech_Vestonice16 0.736 -0.924 0.295
- Spain_ElMiron 0.787 -1.228 0.686
- Ethiopia_4500BP_published.SG -0.101 -0.040 -0.008
- WSHG 2.386 -1.999 -1.935
- Karitiana.DG 1.340 -1.114 -1.424
- Turkey_N -0.413 -0.424 1.698
- Iran_GanjDareh_N -0.733 0.307 -0.635
- A:
- scale 1.732 1.732 1.732
- EHG 1.732 0.000 0.000
- CHG 0.000 1.732 0.000
- Poland_Globular_Amphora 0.000 0.000 1.732
- best coefficients: 0.459 0.429 0.112
- totmean: 0.459 0.429 0.112
- boot mean: 0.459 0.429 0.112
- std. errors: 0.012 0.016 0.014
- error covariance (* 1,000,000)
- 137 -92 -45
- -92 241 -149
- -45 -149 194
- summ: Russia_Samara_EBA_Yamnaya 3 0.052799 0.459 0.429 0.112 137 -92 -45 241 -149 ...
- 194
- fixed pat wt dof chisq tail prob
- 000 0 12 20.838 0.0527989 0.459 0.429 0.112
- 001 1 13 77.994 2.62637e-11 0.484 0.516 0.000
- 010 1 13 643.550 0 0.624 0.000 0.376
- 100 1 13 859.417 0 0.000 1.081 -0.081 infeasible
- 011 2 14 1194.464 0 1.000 0.000 0.000
- 101 2 14 868.319 0 0.000 1.000 0.000
- 110 2 14 2053.904 0 0.000 0.000 1.000
- best pat: 000 0.0527989 - -
- best pat: 001 2.62637e-11 chi(nested): 57.155 p-value for nested model: 4.02697e-14
- best pat: 101 2.63903e-176 chi(nested): 790.326 p-value for nested model: 6.85506e-174
- coeffs: 0.459 0.429 0.112
- ## dscore:: f_4(Base, Fit, Rbase, right2)
- ## genstat:: f_4(Base, Fit, right1, right2)
- details: EHG Russia_Ust_Ishim.DG 0.000540 0.462918
- details: CHG Russia_Ust_Ishim.DG -0.004753 -3.708889
- details: Poland_Globular_Amphora Russia_Ust_Ishim.DG -0.001981 -1.773879
- dscore: Russia_Ust_Ishim.DG f4: -0.002012 Z: -2.280648
- details: EHG Russia_Kostenki14 0.005909 4.807036
- details: CHG Russia_Kostenki14 -0.010175 -7.381171
- details: Poland_Globular_Amphora Russia_Kostenki14 -0.000808 -0.623438
- dscore: Russia_Kostenki14 f4: -0.001738 Z: -1.899620
- details: EHG Russia_MA1_HG.SG 0.018050 13.181136
- details: CHG Russia_MA1_HG.SG -0.020853 -12.843679
- details: Poland_Globular_Amphora Russia_MA1_HG.SG -0.019606 -13.885169
- dscore: Russia_MA1_HG.SG f4: -0.002849 Z: -2.695192
- details: EHG Han.DG 0.004022 4.372880
- details: CHG Han.DG -0.007447 -6.626456
- details: Poland_Globular_Amphora Han.DG -0.006717 -7.049814
- dscore: Han.DG f4: -0.002099 Z: -2.865501
- details: EHG Papuan.DG 0.002218 2.343541
- details: CHG Papuan.DG -0.005816 -5.321495
- details: Poland_Globular_Amphora Papuan.DG -0.003826 -3.922324
- dscore: Papuan.DG f4: -0.001904 Z: -2.660061
- details: EHG ONG.SG 0.001902 1.994697
- details: CHG ONG.SG -0.005924 -5.275603
- details: Poland_Globular_Amphora ONG.SG -0.006028 -6.227721
- dscore: ONG.SG f4: -0.002342 Z: -3.165863
- details: EHG Italy_North_Villabruna_HG 0.012152 9.298024
- details: CHG Italy_North_Villabruna_HG -0.021107 -14.113660
- details: Poland_Globular_Amphora Italy_North_Villabruna_HG 0.011651 8.074301
- dscore: Italy_North_Villabruna_HG f4: -0.002160 Z: -2.193357
- details: EHG Czech_Vestonice16 0.007893 5.986200
- details: CHG Czech_Vestonice16 -0.012561 -8.410424
- details: Poland_Globular_Amphora Czech_Vestonice16 0.003514 2.502877
- dscore: Czech_Vestonice16 f4: -0.001365 Z: -1.332331
- details: EHG Spain_ElMiron 0.008443 6.348939
- details: CHG Spain_ElMiron -0.016690 -11.086648
- details: Poland_Globular_Amphora Spain_ElMiron 0.008164 5.637288
- dscore: Spain_ElMiron f4: -0.002361 Z: -2.276751
- details: EHG Ethiopia_4500BP_published.SG -0.001085 -1.343003
- details: CHG Ethiopia_4500BP_published.SG -0.000538 -0.592350
- details: Poland_Globular_Amphora Ethiopia_4500BP_published.SG -0.000094 -0.108289
- dscore: Ethiopia_4500BP_published.SG f4: -0.000739 Z: -1.198938
- details: EHG WSHG 0.025597 22.861077
- details: CHG WSHG -0.027169 -21.204937
- details: Poland_Globular_Amphora WSHG -0.023020 -18.985308
- dscore: WSHG f4: -0.002473 Z: -2.852267
- details: EHG Karitiana.DG 0.014376 12.716082
- details: CHG Karitiana.DG -0.015135 -11.710257
- details: Poland_Globular_Amphora Karitiana.DG -0.016940 -14.596176
- dscore: Karitiana.DG f4: -0.001786 Z: -2.052511
- details: EHG Turkey_N -0.004432 -5.467621
- details: CHG Turkey_N -0.005765 -6.065345
- details: Poland_Globular_Amphora Turkey_N 0.020200 22.096061
- dscore: Turkey_N f4: -0.002241 Z: -3.510693
- details: EHG Iran_GanjDareh_N -0.007865 -8.901361
- details: CHG Iran_GanjDareh_N 0.004169 4.042572
- details: Poland_Globular_Amphora Iran_GanjDareh_N -0.007550 -8.164433
- dscore: Iran_GanjDareh_N f4: -0.002671 Z: -3.925763
- gendstat: Mbuti.DG Russia_Ust_Ishim.DG -2.281
- gendstat: Mbuti.DG Russia_Kostenki14 -1.900
- gendstat: Mbuti.DG Russia_MA1_HG.SG -2.695
- gendstat: Mbuti.DG Han.DG -2.866
- gendstat: Mbuti.DG Papuan.DG -2.660
- gendstat: Mbuti.DG ONG.SG -3.166
- gendstat: Mbuti.DG Italy_North_Villabruna_HG -2.193
- gendstat: Mbuti.DG Czech_Vestonice16 -1.332
- gendstat: Mbuti.DG Spain_ElMiron -2.277
- gendstat: Mbuti.DG Ethiopia_4500BP_published.SG -1.199
- gendstat: Mbuti.DG WSHG -2.852
- gendstat: Mbuti.DG Karitiana.DG -2.053
- gendstat: Mbuti.DG Turkey_N -3.511
- gendstat: Mbuti.DG Iran_GanjDareh_N -3.926
- gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14 0.263
- gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG -0.708
- gendstat: Russia_Ust_Ishim.DG Han.DG -0.100
- gendstat: Russia_Ust_Ishim.DG Papuan.DG 0.125
- gendstat: Russia_Ust_Ishim.DG ONG.SG -0.386
- gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -0.134
- gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 0.583
- gendstat: Russia_Ust_Ishim.DG Spain_ElMiron -0.326
- gendstat: Russia_Ust_Ishim.DG Ethiopia_4500BP_published.SG 1.327
- gendstat: Russia_Ust_Ishim.DG WSHG -0.449
- gendstat: Russia_Ust_Ishim.DG Karitiana.DG 0.220
- gendstat: Russia_Ust_Ishim.DG Turkey_N -0.269
- gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N -0.732
- gendstat: Russia_Kostenki14 Russia_MA1_HG.SG -0.984
- gendstat: Russia_Kostenki14 Han.DG -0.404
- gendstat: Russia_Kostenki14 Papuan.DG -0.178
- gendstat: Russia_Kostenki14 ONG.SG -0.674
- gendstat: Russia_Kostenki14 Italy_North_Villabruna_HG -0.400
- gendstat: Russia_Kostenki14 Czech_Vestonice16 0.348
- gendstat: Russia_Kostenki14 Spain_ElMiron -0.560
- gendstat: Russia_Kostenki14 Ethiopia_4500BP_published.SG 0.964
- gendstat: Russia_Kostenki14 WSHG -0.753
- gendstat: Russia_Kostenki14 Karitiana.DG -0.048
- gendstat: Russia_Kostenki14 Turkey_N -0.601
- gendstat: Russia_Kostenki14 Iran_GanjDareh_N -1.049
- gendstat: Russia_MA1_HG.SG Han.DG 0.748
- gendstat: Russia_MA1_HG.SG Papuan.DG 0.905
- gendstat: Russia_MA1_HG.SG ONG.SG 0.489
- gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG 0.581
- gendstat: Russia_MA1_HG.SG Czech_Vestonice16 1.229
- gendstat: Russia_MA1_HG.SG Spain_ElMiron 0.395
- gendstat: Russia_MA1_HG.SG Ethiopia_4500BP_published.SG 1.868
- gendstat: Russia_MA1_HG.SG WSHG 0.384
- gendstat: Russia_MA1_HG.SG Karitiana.DG 1.048
- gendstat: Russia_MA1_HG.SG Turkey_N 0.610
- gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N 0.174
- gendstat: Han.DG Papuan.DG 0.295
- gendstat: Han.DG ONG.SG -0.381
- gendstat: Han.DG Italy_North_Villabruna_HG -0.062
- gendstat: Han.DG Czech_Vestonice16 0.715
- gendstat: Han.DG Spain_ElMiron -0.254
- gendstat: Han.DG Ethiopia_4500BP_published.SG 1.601
- gendstat: Han.DG WSHG -0.459
- gendstat: Han.DG Karitiana.DG 0.430
- gendstat: Han.DG Turkey_N -0.206
- gendstat: Han.DG Iran_GanjDareh_N -0.798
- gendstat: Papuan.DG ONG.SG -0.647
- gendstat: Papuan.DG Italy_North_Villabruna_HG -0.262
- gendstat: Papuan.DG Czech_Vestonice16 0.525
- gendstat: Papuan.DG Spain_ElMiron -0.445
- gendstat: Papuan.DG Ethiopia_4500BP_published.SG 1.344
- gendstat: Papuan.DG WSHG -0.642
- gendstat: Papuan.DG Karitiana.DG 0.145
- gendstat: Papuan.DG Turkey_N -0.484
- gendstat: Papuan.DG Iran_GanjDareh_N -1.054
- gendstat: ONG.SG Italy_North_Villabruna_HG 0.189
- gendstat: ONG.SG Czech_Vestonice16 0.948
- gendstat: ONG.SG Spain_ElMiron -0.019
- gendstat: ONG.SG Ethiopia_4500BP_published.SG 1.873
- gendstat: ONG.SG WSHG -0.153
- gendstat: ONG.SG Karitiana.DG 0.686
- gendstat: ONG.SG Turkey_N 0.153
- gendstat: ONG.SG Iran_GanjDareh_N -0.470
- gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 0.724
- gendstat: Italy_North_Villabruna_HG Spain_ElMiron -0.193
- gendstat: Italy_North_Villabruna_HG Ethiopia_4500BP_published.SG 1.332
- gendstat: Italy_North_Villabruna_HG WSHG -0.295
- gendstat: Italy_North_Villabruna_HG Karitiana.DG 0.365
- gendstat: Italy_North_Villabruna_HG Turkey_N -0.094
- gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.542
- gendstat: Czech_Vestonice16 Spain_ElMiron -0.866
- gendstat: Czech_Vestonice16 Ethiopia_4500BP_published.SG 0.559
- gendstat: Czech_Vestonice16 WSHG -0.991
- gendstat: Czech_Vestonice16 Karitiana.DG -0.378
- gendstat: Czech_Vestonice16 Turkey_N -0.939
- gendstat: Czech_Vestonice16 Iran_GanjDareh_N -1.309
- gendstat: Spain_ElMiron Ethiopia_4500BP_published.SG 1.454
- gendstat: Spain_ElMiron WSHG -0.105
- gendstat: Spain_ElMiron Karitiana.DG 0.528
- gendstat: Spain_ElMiron Turkey_N 0.132
- gendstat: Spain_ElMiron Iran_GanjDareh_N -0.309
- gendstat: Ethiopia_4500BP_published.SG WSHG -1.774
- gendstat: Ethiopia_4500BP_published.SG Karitiana.DG -1.086
- gendstat: Ethiopia_4500BP_published.SG Turkey_N -1.908
- gendstat: Ethiopia_4500BP_published.SG Iran_GanjDareh_N -2.367
- gendstat: WSHG Karitiana.DG 0.845
- gendstat: WSHG Turkey_N 0.295
- gendstat: WSHG Iran_GanjDareh_N -0.251
- gendstat: Karitiana.DG Turkey_N -0.561
- gendstat: Karitiana.DG Iran_GanjDareh_N -1.051
- gendstat: Turkey_N Iran_GanjDareh_N -0.742
- removing /tmp/fsx.18855
- ##end of qpAdm: 13.159 seconds cpu 1.200 Mbytes in use
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