Error: Could not find or load main class pipeline.CtakesPipeline

#!/bin/bash

INPUT=$1
OUTPUT=$2
CTAKES_HOME="full/path/to/CtakesClinicalPipeline/apache-ctakes-3.2.2"
UMLS_USER="####"
UMLS_PASS="####"
CLINICAL_PIPELINE_JAR="/target/CtakesClinicalPipeline-0.0.1-SNAPSHOT.jar"

[[ $CTAKES_HOME == "" ]] && CTAKES_HOME=/usr/local/apache-ctakes-3.2.2

CTAKES_JARS=""
for jar in $(find ${CTAKES_HOME}/lib -iname "*.jar" -type f)
do
  CTAKES_JARS+=$jar
  CTAKES_JARS+=":"
done

current_dir=$PWD
cd $CTAKES_HOME

java -Dctakes.umlsuser=${UMLS_USER} -Dctakes.umlspw=${UMLS_PASS} -cp
${CTAKES_HOME}/desc/:${CTAKES_HOME}/resources/:${CTAKES_JARS%?}:
${current_dir}/${CLINICAL_PIPELINE_JAR} -
-Dlog4j.configuration=file:${CTAKES_HOME}/config/log4j.xml -Xms512M -Xmx3g
pipeline.CtakesPipeline $INPUT $OUTPUT

cd $current_dir

def queries_create(request):
    if not request.user.is_authenticated():
       return render(request, 'login_error.html')


    form = QueryForm(request.POST or None)
    if form.is_valid():
      instance = form.save(commit=False)
      instance.save()
      p = subprocess.Popen(['path/to/run_pipeline.sh'], stdin=subprocess.PIPE,
      stdout=subprocess.PIPE)
      (stdoutdata, stderrdata) = p.communicate()
      instance.processed_data = stdoutdata
      instance.save()

    context = {

      "title":"Create",
      "form": form,

    }
    return render(request, "query_form.html", context)