process_not_found

Configuring section "assemble" from "/mnt/scgc_nfs/opt/conf/nextseq.yaml"
Configuring section "shared" from "/mnt/scgc_nfs/opt/conf/nextseq.yaml"
Configuring section "join" from "/mnt/scgc_nfs/opt/conf/nextseq.yaml"
Configuring section "deliverables" from "/mnt/scgc_nfs/opt/conf/nextseq.yaml"
Configuring section "coassemble" from "/mnt/scgc_nfs/opt/conf/nextseq.yaml"
[2021-11-03 14:17:06,970 Assemble INFO] Assembly started on AH-806-K09
[2021-11-03 14:17:06,971 Assemble INFO] Writing results to /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09
[2021-11-03 14:17:12,450 scgc.utils INFO] Trimming
[2021-11-03 14:17:12,450 scgc.utils INFO] $> trimmomatic.sh PE -phred33 -threads 12 /mnt/scgc_raw/data/nextseq/210408_VH00511_2_AAAFFWNHV/Data/Intensities/BaseCalls/AH-806-K09_R1.fastq.gz /mnt/scgc_raw/data/nextseq/210408_VH00511_2_AAAFFWNHV/Data/Intensities/BaseCalls/AH-806-K09_R2.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpvQ0UkL/AH-806-K09_trimmed_R1.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpTC0UTM/AH-806-K09_orphan_R1.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmp7zpghd/AH-806-K09_trimmed_R2.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpF7dzLP/AH-806-K09_orphan_R2.fastq.gz LEADING:0 TRAILING:5 SLIDINGWINDOW:4:15 MINLEN:36
[2021-11-03 14:17:12,466 sarge WARNING] No process found for Command('trimmomatic.sh PE -phred33 -threads 12 /mnt/scgc_raw/data/nextseq/210408_VH00511_2_AAAFFWNHV/Data/Intensities/BaseCalls/AH-806-K09_R1.fastq.gz /mnt/scgc_raw/data/nextseq/210408_VH00511_2_AAAFFWNHV/Data/Intensities/BaseCalls/AH-806-K09_R2.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpvQ0UkL/AH-806-K09_trimmed_R1.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpTC0UTM/AH-806-K09_orphan_R1.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmp7zpghd/AH-806-K09_trimmed_R2.fastq.gz /mnt/scgc_raw/results/nextseq/210408_VH00511_2_AAAFFWNHV/AH-806-K09/AH-806-K09_WGS_reads/tmpF7dzLP/AH-806-K09_orphan_R2.fastq.gz LEADING:0 TRAILING:5 SLIDINGWINDOW:4:15 MINLEN:36')
Traceback (most recent call last):
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/bin/scgc", line 11, in <module>
    load_entry_point('scgc', 'console_scripts', 'scgc')()
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click/core.py", line 722, in __call__
    return self.main(*args, **kwargs)
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click/core.py", line 697, in main
    rv = self.invoke(ctx)
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click/core.py", line 1066, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click/core.py", line 895, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click/core.py", line 535, in invoke
    return callback(*args, **kwargs)
  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/site-packages/click_config/__init__.py", line 45, in wrapper
    return fn(**kwargs_to_forward)
  File "/mnt/scgc/scgc_nfs/opt/scgcpy/scgc/__main__.py", line 516, in scgc_assemble
    config.assemble.cores,
  File "/mnt/scgc/scgc_nfs/opt/scgcpy/scgc/apps.py", line 159, in trimmomatic
    run(cmd, description="Trimming")
  File "/mnt/scgc/scgc_nfs/opt/scgcpy/scgc/utils.py", line 191, in run
    p = capture_stderr(cmd)
  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 1432, in capture_stderr

  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 1411, in run

  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 1040, in run

  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 1136, in run_node

  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 1282, in run_command_node

  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 632, in run

  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/subprocess.py", line 394, in __init__
    errread, errwrite)
  File "build/bdist.linux-x86_64/egg/sarge/__init__.py", line 545, in _execute_child

  File "/mnt/scgc_nfs/opt/common/anaconda/2.1.0/lib/python2.7/subprocess.py", line 1047, in _execute_child
    raise child_exception
OSError: [Errno 2] No such file or directory