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misnomer001

ukr_N_adm CHG

misnomer001
May 21st, 2020
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  1. allsnps: YES
  2. ## qpAdm version: 1000
  3. seed: 1885569706
  4. read 1073741824 bytes
  5. read 2146675633 bytes
  6. packed geno read OK
  7. end of inpack
  8.  
  9. left pops:
  10. Ukraine_N_adm
  11. Ukraine_Mesolithic
  12. Serbia_Mesolithic_IronGates
  13. Georgia_Kotias.SG
  14.  
  15. right pops:
  16. Cameroon_SMA.DG
  17. Morocco_Iberomaurusian
  18. Russia_Ust_Ishim.DG
  19. Russia_Kostenki14.SG
  20. Russia_MA1_HG.SG
  21. Boisman_MN
  22. ONG.SG
  23. Italy_North_Villabruna_HG
  24. Czech_Vestonice16
  25. Iberia_ElMiron
  26. Israel_Natufian
  27. Georgia_Satsurblia.SG
  28. Iran_GanjDareh_N
  29. Anatolia_Epipaleolithic
  30.  
  31. 0 Ukraine_N_adm 5
  32. 1 Ukraine_Mesolithic 5
  33. 2 Serbia_Mesolithic_IronGates 29
  34. 3 Georgia_Kotias.SG 1
  35. 4 Cameroon_SMA.DG 1
  36. 5 Morocco_Iberomaurusian 6
  37. 6 Russia_Ust_Ishim.DG 1
  38. 7 Russia_Kostenki14.SG 1
  39. 8 Russia_MA1_HG.SG 1
  40. 9 Boisman_MN 12
  41. 10 ONG.SG 6
  42. 11 Italy_North_Villabruna_HG 1
  43. 12 Czech_Vestonice16 1
  44. 13 Iberia_ElMiron 1
  45. 14 Israel_Natufian 6
  46. 15 Georgia_Satsurblia.SG 1
  47. 16 Iran_GanjDareh_N 8
  48. 17 Anatolia_Epipaleolithic 1
  49. jackknife block size: 0.050
  50. snps: 1150511 indivs: 87
  51. number of blocks for block jackknife: 713
  52. ## ncols: 1150511
  53. coverage: Ukraine_N_adm 919905
  54. coverage: Ukraine_Mesolithic 946723
  55. coverage: Serbia_Mesolithic_IronGates 1137488
  56. coverage: Georgia_Kotias.SG 1149097
  57. coverage: Cameroon_SMA.DG 1140138
  58. coverage: Morocco_Iberomaurusian 1101342
  59. coverage: Russia_Ust_Ishim.DG 1062044
  60. coverage: Russia_Kostenki14.SG 1048972
  61. coverage: Russia_MA1_HG.SG 805960
  62. coverage: Boisman_MN 1031750
  63. coverage: ONG.SG 1143397
  64. coverage: Italy_North_Villabruna_HG 883779
  65. coverage: Czech_Vestonice16 732091
  66. coverage: Iberia_ElMiron 626974
  67. coverage: Israel_Natufian 535079
  68. coverage: Georgia_Satsurblia.SG 801311
  69. coverage: Iran_GanjDareh_N 1057358
  70. coverage: Anatolia_Epipaleolithic 848431
  71. dof (jackknife): 619.820
  72. numsnps used: 1150511
  73. codimension 1
  74. f4info:
  75. f4rank: 2 dof: 11 chisq: 15.057 tail: 0.179892531 dofdiff: 13 chisqdiff: -15.057 taildiff: 1
  76. B:
  77. scale 1.000 1.000
  78. Morocco_Iberomaurusian 0.324 0.187
  79. Russia_Ust_Ishim.DG 0.285 0.368
  80. Russia_Kostenki14.SG 0.632 0.363
  81. Russia_MA1_HG.SG 0.557 2.604
  82. Boisman_MN 0.262 1.090
  83. ONG.SG 0.186 0.459
  84. Italy_North_Villabruna_HG 2.646 -1.594
  85. Czech_Vestonice16 0.950 0.239
  86. Iberia_ElMiron 1.354 -0.624
  87. Israel_Natufian 0.330 0.125
  88. Georgia_Satsurblia.SG -1.245 -1.219
  89. Iran_GanjDareh_N -0.567 0.040
  90. Anatolia_Epipaleolithic 0.532 -0.161
  91. A:
  92. scale 305.662 1133.531
  93. Ukraine_Mesolithic -0.068 0.473
  94. Serbia_Mesolithic_IronGates 0.540 -1.396
  95. Georgia_Kotias.SG -1.644 -0.909
  96.  
  97.  
  98. full rank
  99. f4info:
  100. f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 11 chisqdiff: 15.057 taildiff: 0.179892531
  101. B:
  102. scale 1731.535 451.936 183.399
  103. Morocco_Iberomaurusian 0.011 0.160 -0.352
  104. Russia_Ust_Ishim.DG 0.044 0.021 -0.331
  105. Russia_Kostenki14.SG 0.501 0.361 -0.676
  106. Russia_MA1_HG.SG 1.903 -0.996 -0.935
  107. Boisman_MN 0.140 -0.483 -0.474
  108. ONG.SG 0.231 -0.118 -0.270
  109. Italy_North_Villabruna_HG -2.475 2.958 -2.413
  110. Czech_Vestonice16 -0.810 0.541 -1.021
  111. Iberia_ElMiron -1.067 1.412 -1.254
  112. Israel_Natufian -0.570 0.093 -0.378
  113. Georgia_Satsurblia.SG -0.205 -0.269 1.412
  114. Iran_GanjDareh_N -0.375 -0.561 0.504
  115. Anatolia_Epipaleolithic -0.790 0.420 -0.556
  116. A:
  117. scale 1.732 1.732 1.732
  118. Ukraine_Mesolithic 1.732 0.000 0.000
  119. Serbia_Mesolithic_IronGates 0.000 1.732 0.000
  120. Georgia_Kotias.SG 0.000 0.000 1.732
  121.  
  122.  
  123. best coefficients: 0.736 0.222 0.042
  124. Jackknife mean: 0.735164803 0.222362212 0.042472985
  125. std. errors: 0.039 0.029 0.016
  126.  
  127. error covariance (* 1,000,000)
  128. 1490 -1037 -453
  129. -1037 833 204
  130. -453 204 249
  131.  
  132.  
  133. summ: Ukraine_N_adm 3 0.179893 0.735 0.222 0.042 1490 -1037 -453 833 204 ...
  134. 249
  135.  
  136. fixed pat wt dof chisq tail prob
  137. 000 0 11 15.057 0.179893 0.736 0.222 0.042
  138. 001 1 12 21.733 0.0406248 0.817 0.183 0.000
  139. 010 1 12 56.530 9.60832e-08 1.017 0.000 -0.017 infeasible
  140. 100 1 12 369.093 0 0.000 0.696 0.304
  141. 011 2 13 57.155 1.68517e-07 1.000 0.000 0.000
  142. 101 2 13 1075.870 0 0.000 1.000 0.000
  143. 110 2 13 1471.063 0 0.000 0.000 1.000
  144. best pat: 000 0.179893 - -
  145. best pat: 100 1.30501e-71 chi(nested): 354.036 p-value for nested model: 5.6006e-79
  146. best pat: 011 1.68517e-07 not nested
  147.  
  148. coeffs: 0.736 0.222 0.042
  149.  
  150. ## dscore:: f_4(Base, Fit, Rbase, right2)
  151. ## genstat:: f_4(Base, Fit, right1, right2)
  152.  
  153. details: Ukraine_Mesolithic Morocco_Iberomaurusian 0.000006 0.028160
  154. details: Serbia_Mesolithic_IronGates Morocco_Iberomaurusian 0.000353 1.821060
  155. details: Georgia_Kotias.SG Morocco_Iberomaurusian -0.001920 -5.132516
  156. dscore: Morocco_Iberomaurusian f4: 0.000002 Z: 0.008718
  157.  
  158. details: Ukraine_Mesolithic Russia_Ust_Ishim.DG 0.000025 0.096452
  159. details: Serbia_Mesolithic_IronGates Russia_Ust_Ishim.DG 0.000047 0.207194
  160. details: Georgia_Kotias.SG Russia_Ust_Ishim.DG -0.001805 -4.082233
  161. dscore: Russia_Ust_Ishim.DG f4: -0.000047 Z: -0.207457
  162.  
  163. details: Ukraine_Mesolithic Russia_Kostenki14.SG 0.000290 0.982386
  164. details: Serbia_Mesolithic_IronGates Russia_Kostenki14.SG 0.000798 3.158076
  165. details: Georgia_Kotias.SG Russia_Kostenki14.SG -0.003688 -7.590872
  166. dscore: Russia_Kostenki14.SG f4: 0.000234 Z: 0.919251
  167.  
  168. details: Ukraine_Mesolithic Russia_MA1_HG.SG 0.001099 3.834894
  169. details: Serbia_Mesolithic_IronGates Russia_MA1_HG.SG -0.002204 -8.689582
  170. details: Georgia_Kotias.SG Russia_MA1_HG.SG -0.005096 -10.899394
  171. dscore: Russia_MA1_HG.SG f4: 0.000105 Z: 0.418488
  172.  
  173. details: Ukraine_Mesolithic Boisman_MN 0.000081 0.319357
  174. details: Serbia_Mesolithic_IronGates Boisman_MN -0.001068 -5.228893
  175. details: Georgia_Kotias.SG Boisman_MN -0.002586 -6.393240
  176. dscore: Boisman_MN f4: -0.000287 Z: -1.315857
  177.  
  178. details: Ukraine_Mesolithic ONG.SG 0.000134 0.543733
  179. details: Serbia_Mesolithic_IronGates ONG.SG -0.000260 -1.285974
  180. details: Georgia_Kotias.SG ONG.SG -0.001475 -3.538035
  181. dscore: ONG.SG f4: -0.000022 Z: -0.101508
  182.  
  183. details: Ukraine_Mesolithic Italy_North_Villabruna_HG -0.001429 -4.133816
  184. details: Serbia_Mesolithic_IronGates Italy_North_Villabruna_HG 0.006544 22.208518
  185. details: Georgia_Kotias.SG Italy_North_Villabruna_HG -0.013158 -24.824168
  186. dscore: Italy_North_Villabruna_HG f4: -0.000159 Z: -0.530299
  187.  
  188. details: Ukraine_Mesolithic Czech_Vestonice16 -0.000468 -1.585220
  189. details: Serbia_Mesolithic_IronGates Czech_Vestonice16 0.001197 4.756356
  190. details: Georgia_Kotias.SG Czech_Vestonice16 -0.005568 -12.112914
  191. dscore: Czech_Vestonice16 f4: -0.000315 Z: -1.230760
  192.  
  193. details: Ukraine_Mesolithic Iberia_ElMiron -0.000616 -2.175048
  194. details: Serbia_Mesolithic_IronGates Iberia_ElMiron 0.003123 11.682951
  195. details: Georgia_Kotias.SG Iberia_ElMiron -0.006835 -15.645045
  196. dscore: Iberia_ElMiron f4: -0.000051 Z: -0.205342
  197.  
  198. details: Ukraine_Mesolithic Israel_Natufian -0.000329 -1.391986
  199. details: Serbia_Mesolithic_IronGates Israel_Natufian 0.000207 0.957830
  200. details: Georgia_Kotias.SG Israel_Natufian -0.002063 -5.789326
  201. dscore: Israel_Natufian f4: -0.000284 Z: -1.358137
  202.  
  203. details: Ukraine_Mesolithic Georgia_Satsurblia.SG -0.000119 -0.450753
  204. details: Serbia_Mesolithic_IronGates Georgia_Satsurblia.SG -0.000596 -2.545644
  205. details: Georgia_Kotias.SG Georgia_Satsurblia.SG 0.007696 16.544277
  206. dscore: Georgia_Satsurblia.SG f4: 0.000107 Z: 0.461256
  207.  
  208. details: Ukraine_Mesolithic Iran_GanjDareh_N -0.000217 -0.911089
  209. details: Serbia_Mesolithic_IronGates Iran_GanjDareh_N -0.001242 -6.487739
  210. details: Georgia_Kotias.SG Iran_GanjDareh_N 0.002750 7.147318
  211. dscore: Iran_GanjDareh_N f4: -0.000318 Z: -1.554413
  212.  
  213. details: Ukraine_Mesolithic Anatolia_Epipaleolithic -0.000456 -1.585573
  214. details: Serbia_Mesolithic_IronGates Anatolia_Epipaleolithic 0.000929 3.484818
  215. details: Georgia_Kotias.SG Anatolia_Epipaleolithic -0.003033 -6.322812
  216. dscore: Anatolia_Epipaleolithic f4: -0.000258 Z: -1.004198
  217.  
  218. gendstat: Cameroon_SMA.DG Morocco_Iberomaurusian 0.009
  219. gendstat: Cameroon_SMA.DG Russia_Ust_Ishim.DG -0.207
  220. gendstat: Cameroon_SMA.DG Russia_Kostenki14.SG 0.919
  221. gendstat: Cameroon_SMA.DG Russia_MA1_HG.SG 0.418
  222. gendstat: Cameroon_SMA.DG Boisman_MN -1.316
  223. gendstat: Cameroon_SMA.DG ONG.SG -0.102
  224. gendstat: Cameroon_SMA.DG Italy_North_Villabruna_HG -0.530
  225. gendstat: Cameroon_SMA.DG Czech_Vestonice16 -1.231
  226. gendstat: Cameroon_SMA.DG Iberia_ElMiron -0.205
  227. gendstat: Cameroon_SMA.DG Israel_Natufian -1.358
  228. gendstat: Cameroon_SMA.DG Georgia_Satsurblia.SG 0.461
  229. gendstat: Cameroon_SMA.DG Iran_GanjDareh_N -1.554
  230. gendstat: Cameroon_SMA.DG Anatolia_Epipaleolithic -1.004
  231. gendstat: Morocco_Iberomaurusian Russia_Ust_Ishim.DG -0.203
  232. gendstat: Morocco_Iberomaurusian Russia_Kostenki14.SG 0.893
  233. gendstat: Morocco_Iberomaurusian Russia_MA1_HG.SG 0.389
  234. gendstat: Morocco_Iberomaurusian Boisman_MN -1.310
  235. gendstat: Morocco_Iberomaurusian ONG.SG -0.107
  236. gendstat: Morocco_Iberomaurusian Italy_North_Villabruna_HG -0.546
  237. gendstat: Morocco_Iberomaurusian Czech_Vestonice16 -1.236
  238. gendstat: Morocco_Iberomaurusian Iberia_ElMiron -0.200
  239. gendstat: Morocco_Iberomaurusian Israel_Natufian -1.312
  240. gendstat: Morocco_Iberomaurusian Georgia_Satsurblia.SG 0.418
  241. gendstat: Morocco_Iberomaurusian Iran_GanjDareh_N -1.564
  242. gendstat: Morocco_Iberomaurusian Anatolia_Epipaleolithic -1.018
  243. gendstat: Russia_Ust_Ishim.DG Russia_Kostenki14.SG 1.045
  244. gendstat: Russia_Ust_Ishim.DG Russia_MA1_HG.SG 0.540
  245. gendstat: Russia_Ust_Ishim.DG Boisman_MN -1.023
  246. gendstat: Russia_Ust_Ishim.DG ONG.SG 0.116
  247. gendstat: Russia_Ust_Ishim.DG Italy_North_Villabruna_HG -0.370
  248. gendstat: Russia_Ust_Ishim.DG Czech_Vestonice16 -0.955
  249. gendstat: Russia_Ust_Ishim.DG Iberia_ElMiron -0.013
  250. gendstat: Russia_Ust_Ishim.DG Israel_Natufian -0.897
  251. gendstat: Russia_Ust_Ishim.DG Georgia_Satsurblia.SG 0.582
  252. gendstat: Russia_Ust_Ishim.DG Iran_GanjDareh_N -1.174
  253. gendstat: Russia_Ust_Ishim.DG Anatolia_Epipaleolithic -0.751
  254. gendstat: Russia_Kostenki14.SG Russia_MA1_HG.SG -0.463
  255. gendstat: Russia_Kostenki14.SG Boisman_MN -2.130
  256. gendstat: Russia_Kostenki14.SG ONG.SG -1.044
  257. gendstat: Russia_Kostenki14.SG Italy_North_Villabruna_HG -1.234
  258. gendstat: Russia_Kostenki14.SG Czech_Vestonice16 -1.900
  259. gendstat: Russia_Kostenki14.SG Iberia_ElMiron -0.923
  260. gendstat: Russia_Kostenki14.SG Israel_Natufian -1.912
  261. gendstat: Russia_Kostenki14.SG Georgia_Satsurblia.SG -0.446
  262. gendstat: Russia_Kostenki14.SG Iran_GanjDareh_N -2.292
  263. gendstat: Russia_Kostenki14.SG Anatolia_Epipaleolithic -1.656
  264. gendstat: Russia_MA1_HG.SG Boisman_MN -1.574
  265. gendstat: Russia_MA1_HG.SG ONG.SG -0.499
  266. gendstat: Russia_MA1_HG.SG Italy_North_Villabruna_HG -0.827
  267. gendstat: Russia_MA1_HG.SG Czech_Vestonice16 -1.395
  268. gendstat: Russia_MA1_HG.SG Iberia_ElMiron -0.517
  269. gendstat: Russia_MA1_HG.SG Israel_Natufian -1.425
  270. gendstat: Russia_MA1_HG.SG Georgia_Satsurblia.SG 0.005
  271. gendstat: Russia_MA1_HG.SG Iran_GanjDareh_N -1.727
  272. gendstat: Russia_MA1_HG.SG Anatolia_Epipaleolithic -1.268
  273. gendstat: Boisman_MN ONG.SG 1.461
  274. gendstat: Boisman_MN Italy_North_Villabruna_HG 0.430
  275. gendstat: Boisman_MN Czech_Vestonice16 -0.107
  276. gendstat: Boisman_MN Iberia_ElMiron 0.884
  277. gendstat: Boisman_MN Israel_Natufian 0.011
  278. gendstat: Boisman_MN Georgia_Satsurblia.SG 1.563
  279. gendstat: Boisman_MN Iran_GanjDareh_N -0.159
  280. gendstat: Boisman_MN Anatolia_Epipaleolithic 0.110
  281. gendstat: ONG.SG Italy_North_Villabruna_HG -0.473
  282. gendstat: ONG.SG Czech_Vestonice16 -1.154
  283. gendstat: ONG.SG Iberia_ElMiron -0.112
  284. gendstat: ONG.SG Israel_Natufian -1.124
  285. gendstat: ONG.SG Georgia_Satsurblia.SG 0.529
  286. gendstat: ONG.SG Iran_GanjDareh_N -1.505
  287. gendstat: ONG.SG Anatolia_Epipaleolithic -0.940
  288. gendstat: Italy_North_Villabruna_HG Czech_Vestonice16 -0.486
  289. gendstat: Italy_North_Villabruna_HG Iberia_ElMiron 0.357
  290. gendstat: Italy_North_Villabruna_HG Israel_Natufian -0.409
  291. gendstat: Italy_North_Villabruna_HG Georgia_Satsurblia.SG 0.816
  292. gendstat: Italy_North_Villabruna_HG Iran_GanjDareh_N -0.532
  293. gendstat: Italy_North_Villabruna_HG Anatolia_Epipaleolithic -0.321
  294. gendstat: Czech_Vestonice16 Iberia_ElMiron 0.924
  295. gendstat: Czech_Vestonice16 Israel_Natufian 0.114
  296. gendstat: Czech_Vestonice16 Georgia_Satsurblia.SG 1.449
  297. gendstat: Czech_Vestonice16 Iran_GanjDareh_N -0.014
  298. gendstat: Czech_Vestonice16 Anatolia_Epipaleolithic 0.202
  299. gendstat: Iberia_ElMiron Israel_Natufian -0.866
  300. gendstat: Iberia_ElMiron Georgia_Satsurblia.SG 0.525
  301. gendstat: Iberia_ElMiron Iran_GanjDareh_N -1.030
  302. gendstat: Iberia_ElMiron Anatolia_Epipaleolithic -0.714
  303. gendstat: Israel_Natufian Georgia_Satsurblia.SG 1.521
  304. gendstat: Israel_Natufian Iran_GanjDareh_N -0.150
  305. gendstat: Israel_Natufian Anatolia_Epipaleolithic 0.100
  306. gendstat: Georgia_Satsurblia.SG Iran_GanjDareh_N -1.937
  307. gendstat: Georgia_Satsurblia.SG Anatolia_Epipaleolithic -1.309
  308. gendstat: Iran_GanjDareh_N Anatolia_Epipaleolithic 0.240
  309.  
  310. ##end of qpAdm: 390.650 seconds cpu 1442.050 Mbytes in use
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