Chunking MediaCodec output with Surface input

Every X frames I call chunkRecording() after drainEncoder(true):

private void chunkRecording(){
        stopEncoder();
    restartMuxerForNextChunk();
        mVideoEncoder = MediaCodec.createEncoderByType(MIME_TYPE);
        mVideoEncoder.configure(mVideoFormat, null, null, MediaCodec.CONFIGURE_FLAG_ENCODE);
        mInputSurface.updateSurface(mVideoEncoder.createInputSurface());
        mVideoEncoder.start();
        mInputSurface.makeCurrent();
        mStManager.signalSurfaceCreated(); // calls mTextureRender.surfaceCreated();
}

private static class CodecInputSurface {
  ...
  public void updateSurface(Surface newSurface){
            release();
            mSurface = newSurface;
            eglSetup();
  }

}