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Oct 1st, 2013
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  1. profile = {nucleotide : [0 for i in xrange(len(matrix[0])) ] for nucleotide in LETTERS}
  2.     for i in xrange(len(matrix)):
  3.         for j in xrange(len(matrix[i])):
  4.             profile[matrix[i][j]][j] += 1
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