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Error while installing user interface in openmrs

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Feb 11th, 2016
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  1. 12-Feb-2016 00:06:36.941 WARNING [http-nio-8008-exec-28] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-16] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  2. java.lang.Thread.sleep(Native Method)
  3. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  4. 12-Feb-2016 00:06:36.943 WARNING [http-nio-8008-exec-28] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  5. java.lang.Object.wait(Native Method)
  6. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  7. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:40)
  8. 12-Feb-2016 00:06:36.944 WARNING [http-nio-8008-exec-28] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [org.azeckoski.reflectutils.refmap.Finalizer] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  9. java.lang.Object.wait(Native Method)
  10. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  11. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:164)
  12. org.azeckoski.reflectutils.refmap.Finalizer.run(Finalizer.java:127)
  13. 12-Feb-2016 00:06:36.948 SEVERE [http-nio-8008-exec-28] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@276c5e]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  14. 12-Feb-2016 00:08:11.240 WARNING [http-nio-8008-exec-32] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-old] appears to have started a thread named [Thread-8] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  15. java.lang.Thread.sleep(Native Method)
  16. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  17. 12-Feb-2016 00:08:11.241 SEVERE [http-nio-8008-exec-32] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs-old] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@c3692d]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  18. 12-Feb-2016 00:08:11.242 SEVERE [http-nio-8008-exec-32] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs-old] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@c3692d]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  19. 12-Feb-2016 00:25:15.277 INFO [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs]
  20. 12-Feb-2016 00:25:24.235 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  21. 12-Feb-2016 00:25:24.469 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-26] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  22. java.lang.Thread.sleep(Native Method)
  23. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  24. 12-Feb-2016 00:25:24.667 SEVERE [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4a2526]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  25. 12-Feb-2016 00:25:24.686 SEVERE [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4a2526]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  26. 12-Feb-2016 00:25:24.703 SEVERE [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4a2526]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  27. 12-Feb-2016 00:25:24.703 SEVERE [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4a2526]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  28. 12-Feb-2016 00:25:24.728 SEVERE [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4a2526]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  29. 12-Feb-2016 00:25:27.315 INFO [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs-old]
  30. 12-Feb-2016 00:25:27.545 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  31. 12-Feb-2016 00:25:27.627 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8008"]
  32. 12-Feb-2016 00:25:27.729 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  33. 12-Feb-2016 00:25:27.780 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service Catalina
  34. 12-Feb-2016 00:25:28.413 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-old] appears to have started a thread named [Thread-34] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  35. java.lang.Thread.sleep(Native Method)
  36. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  37. 12-Feb-2016 00:25:33.831 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8008"]
  38. 12-Feb-2016 00:25:34.213 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  39. 12-Feb-2016 00:25:34.223 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8008"]
  40. 12-Feb-2016 00:25:34.293 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  41. 12-Feb-2016 00:25:35.649 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.30
  42. 12-Feb-2016 00:25:35.655 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 1 2015 22:30:46 UTC
  43. 12-Feb-2016 00:25:35.655 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.30.0
  44. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  45. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-24-generic
  46. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: i386
  47. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-oracle/jre
  48. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_72-b15
  49. 12-Feb-2016 00:25:35.656 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  50. 12-Feb-2016 00:25:35.657 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  51. 12-Feb-2016 00:25:35.657 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  52. 12-Feb-2016 00:25:35.657 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  53. 12-Feb-2016 00:25:35.657 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  54. 12-Feb-2016 00:25:35.658 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/opt/tomcat/endorsed
  55. 12-Feb-2016 00:25:35.658 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  56. 12-Feb-2016 00:25:35.658 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  57. 12-Feb-2016 00:25:35.658 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  58. 12-Feb-2016 00:25:35.658 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/i386:/lib:/usr/lib
  59. 12-Feb-2016 00:25:36.135 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8008"]
  60. 12-Feb-2016 00:25:36.180 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  61. 12-Feb-2016 00:25:36.184 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  62. 12-Feb-2016 00:25:36.187 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  63. 12-Feb-2016 00:25:36.187 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2172 ms
  64. 12-Feb-2016 00:25:36.250 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
  65. 12-Feb-2016 00:25:36.250 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.30
  66. 12-Feb-2016 00:25:36.266 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/host-manager
  67. 12-Feb-2016 00:25:36.826 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/host-manager has finished in 560 ms
  68. 12-Feb-2016 00:25:36.827 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/manager
  69. 12-Feb-2016 00:25:36.907 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/manager has finished in 79 ms
  70. 12-Feb-2016 00:25:36.907 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/docs
  71. 12-Feb-2016 00:25:36.945 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/docs has finished in 37 ms
  72. 12-Feb-2016 00:25:36.945 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/ROOT
  73. 12-Feb-2016 00:25:36.973 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/ROOT has finished in 28 ms
  74. 12-Feb-2016 00:25:36.974 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/examples
  75. 12-Feb-2016 00:25:37.486 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/examples has finished in 512 ms
  76. 12-Feb-2016 00:25:37.492 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8008"]
  77. 12-Feb-2016 00:25:37.501 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  78. 12-Feb-2016 00:25:37.503 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 1315 ms
  79. 12-Feb-2016 00:25:47.500 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs.war
  80. 12-Feb-2016 00:25:47.506 WARNING [localhost-startStop-2] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  81. 12-Feb-2016 00:25:54.590 INFO [localhost-startStop-2] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  82. 12-Feb-2016 00:25:59.637 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs.war has finished in 12,136 ms
  83. 12-Feb-2016 00:27:00.180 INFO [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs]
  84. 12-Feb-2016 00:27:00.238 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  85. 12-Feb-2016 00:27:00.239 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-6] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  86. java.lang.Thread.sleep(Native Method)
  87. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  88. 12-Feb-2016 00:27:00.315 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs-new.war
  89. 12-Feb-2016 00:27:00.320 WARNING [localhost-startStop-3] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  90. 12-Feb-2016 00:27:05.203 INFO [localhost-startStop-3] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  91. 12-Feb-2016 00:27:05.888 INFO [localhost-startStop-3] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs-new.war has finished in 5,574 ms
  92. 12-Feb-2016 00:27:09.798 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  93. 12-Feb-2016 00:27:09.799 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8008"]
  94. 12-Feb-2016 00:27:09.854 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  95. 12-Feb-2016 00:27:09.905 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service Catalina
  96. 12-Feb-2016 00:27:09.961 WARNING [localhost-startStop-3] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-7] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  97. java.lang.Thread.sleep(Native Method)
  98. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  99. 12-Feb-2016 00:27:09.976 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8008"]
  100. 12-Feb-2016 00:27:10.059 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  101. 12-Feb-2016 00:27:10.060 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8008"]
  102. 12-Feb-2016 00:27:10.062 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  103. 12-Feb-2016 00:27:12.525 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.30
  104. 12-Feb-2016 00:27:12.527 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 1 2015 22:30:46 UTC
  105. 12-Feb-2016 00:27:12.527 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.30.0
  106. 12-Feb-2016 00:27:12.527 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  107. 12-Feb-2016 00:27:12.527 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-24-generic
  108. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: i386
  109. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-oracle/jre
  110. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_72-b15
  111. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  112. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  113. 12-Feb-2016 00:27:12.528 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  114. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  115. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  116. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/opt/tomcat/endorsed
  117. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  118. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  119. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  120. 12-Feb-2016 00:27:12.529 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/i386:/lib:/usr/lib
  121. 12-Feb-2016 00:27:12.779 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8008"]
  122. 12-Feb-2016 00:27:12.813 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  123. 12-Feb-2016 00:27:12.817 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  124. 12-Feb-2016 00:27:12.819 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  125. 12-Feb-2016 00:27:12.820 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 906 ms
  126. 12-Feb-2016 00:27:12.871 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
  127. 12-Feb-2016 00:27:12.872 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.30
  128. 12-Feb-2016 00:27:12.917 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs-new.war
  129. 12-Feb-2016 00:27:12.940 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  130. 12-Feb-2016 00:27:18.371 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  131. 12-Feb-2016 00:27:19.130 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs-new.war has finished in 6,212 ms
  132. 12-Feb-2016 00:27:19.132 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/host-manager
  133. 12-Feb-2016 00:27:19.169 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/host-manager has finished in 37 ms
  134. 12-Feb-2016 00:27:19.169 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/manager
  135. 12-Feb-2016 00:27:19.220 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/manager has finished in 51 ms
  136. 12-Feb-2016 00:27:19.221 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/docs
  137. 12-Feb-2016 00:27:19.245 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/docs has finished in 24 ms
  138. 12-Feb-2016 00:27:19.245 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/ROOT
  139. 12-Feb-2016 00:27:19.266 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/ROOT has finished in 21 ms
  140. 12-Feb-2016 00:27:19.266 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/examples
  141. 12-Feb-2016 00:27:19.470 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/examples has finished in 204 ms
  142. 12-Feb-2016 00:27:19.520 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8008"]
  143. 12-Feb-2016 00:27:19.535 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  144. 12-Feb-2016 00:27:19.542 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 6722 ms
  145. 12-Feb-2016 00:39:37.606 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  146. 12-Feb-2016 00:39:37.607 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8008"]
  147. 12-Feb-2016 00:39:37.658 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  148. 12-Feb-2016 00:39:37.709 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service Catalina
  149. 12-Feb-2016 00:39:37.843 WARNING [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-5] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  150. java.lang.Thread.sleep(Native Method)
  151. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  152. 12-Feb-2016 00:39:37.844 WARNING [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  153. java.lang.Object.wait(Native Method)
  154. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  155. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:40)
  156. 12-Feb-2016 00:39:37.845 WARNING [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [org.azeckoski.reflectutils.refmap.Finalizer] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  157. java.lang.Object.wait(Native Method)
  158. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  159. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:164)
  160. org.azeckoski.reflectutils.refmap.Finalizer.run(Finalizer.java:127)
  161. 12-Feb-2016 00:39:37.846 SEVERE [localhost-startStop-2] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs-new] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@186b4be]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  162. 12-Feb-2016 00:39:37.871 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8008"]
  163. 12-Feb-2016 00:39:37.962 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  164. 12-Feb-2016 00:39:37.963 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8008"]
  165. 12-Feb-2016 00:39:37.963 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  166. 12-Feb-2016 00:39:40.389 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.30
  167. 12-Feb-2016 00:39:40.391 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 1 2015 22:30:46 UTC
  168. 12-Feb-2016 00:39:40.391 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.30.0
  169. 12-Feb-2016 00:39:40.391 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  170. 12-Feb-2016 00:39:40.391 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-24-generic
  171. 12-Feb-2016 00:39:40.391 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: i386
  172. 12-Feb-2016 00:39:40.392 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-oracle/jre
  173. 12-Feb-2016 00:39:40.392 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_72-b15
  174. 12-Feb-2016 00:39:40.392 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  175. 12-Feb-2016 00:39:40.392 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  176. 12-Feb-2016 00:39:40.392 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  177. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  178. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  179. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/opt/tomcat/endorsed
  180. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  181. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  182. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  183. 12-Feb-2016 00:39:40.393 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/i386:/lib:/usr/lib
  184. 12-Feb-2016 00:39:40.641 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8008"]
  185. 12-Feb-2016 00:39:40.668 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  186. 12-Feb-2016 00:39:40.671 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  187. 12-Feb-2016 00:39:40.673 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  188. 12-Feb-2016 00:39:40.674 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 937 ms
  189. 12-Feb-2016 00:39:40.723 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
  190. 12-Feb-2016 00:39:40.723 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.30
  191. 12-Feb-2016 00:39:40.780 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs-new.war
  192. 12-Feb-2016 00:39:40.804 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  193. 12-Feb-2016 00:39:46.152 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  194. 12-Feb-2016 00:40:12.114 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs-new.war has finished in 31,333 ms
  195. 12-Feb-2016 00:40:12.115 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/host-manager
  196. 12-Feb-2016 00:40:12.154 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/host-manager has finished in 38 ms
  197. 12-Feb-2016 00:40:12.154 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/manager
  198. 12-Feb-2016 00:40:12.196 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/manager has finished in 42 ms
  199. 12-Feb-2016 00:40:12.196 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/docs
  200. 12-Feb-2016 00:40:12.220 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/docs has finished in 24 ms
  201. 12-Feb-2016 00:40:12.220 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/ROOT
  202. 12-Feb-2016 00:40:12.242 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/ROOT has finished in 22 ms
  203. 12-Feb-2016 00:40:12.242 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/examples
  204. 12-Feb-2016 00:40:12.472 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/examples has finished in 229 ms
  205. 12-Feb-2016 00:40:12.479 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8008"]
  206. 12-Feb-2016 00:40:12.498 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  207. 12-Feb-2016 00:40:12.508 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 31834 ms
  208. 12-Feb-2016 00:40:19.865 WARNING [http-nio-8008-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-5] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  209. java.lang.Thread.sleep(Native Method)
  210. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  211. 12-Feb-2016 00:40:19.867 SEVERE [http-nio-8008-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs-new] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4175e5]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  212. 12-Feb-2016 00:40:19.867 SEVERE [http-nio-8008-exec-5] org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks The web application [openmrs-new] created a ThreadLocal with key of type [org.apache.log4j.helpers.ThreadLocalMap] (value [org.apache.log4j.helpers.ThreadLocalMap@4175e5]) and a value of type [java.util.Hashtable] (value [{}]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
  213. 12-Feb-2016 00:45:35.259 INFO [http-nio-8008-exec-14] org.apache.catalina.util.LifecycleBase.start The start() method was called on component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/openmrs-new]] after start() had already been called. The second call will be ignored.
  214. 12-Feb-2016 00:45:48.653 WARNING [http-nio-8008-exec-20] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-21] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  215. java.lang.Thread.sleep(Native Method)
  216. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  217. 12-Feb-2016 00:45:48.654 WARNING [http-nio-8008-exec-20] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  218. java.lang.Object.wait(Native Method)
  219. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  220. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:40)
  221. 12-Feb-2016 01:03:50.692 WARNING [http-nio-8008-exec-21] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-30] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  222. java.lang.Thread.sleep(Native Method)
  223. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  224. 12-Feb-2016 01:03:50.693 WARNING [http-nio-8008-exec-21] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  225. java.lang.Object.wait(Native Method)
  226. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  227. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:40)
  228. 12-Feb-2016 01:16:33.353 INFO [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs-new]
  229. 12-Feb-2016 01:16:33.380 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Thread-42] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  230. java.lang.Thread.sleep(Native Method)
  231. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  232. 12-Feb-2016 01:16:33.387 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs-new] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  233. java.lang.Object.wait(Native Method)
  234. java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:143)
  235. com.mysql.jdbc.AbandonedConnectionCleanupThread.run(AbandonedConnectionCleanupThread.java:40)
  236. 12-Feb-2016 01:17:03.492 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs.war
  237. 12-Feb-2016 01:17:03.497 WARNING [localhost-startStop-2] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  238. 12-Feb-2016 01:17:08.929 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs.war has finished in 5,436 ms
  239. 12-Feb-2016 01:17:31.319 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  240. 12-Feb-2016 01:17:31.320 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8008"]
  241. 12-Feb-2016 01:17:31.322 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  242. 12-Feb-2016 01:17:31.323 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service Catalina
  243. 12-Feb-2016 01:17:31.394 WARNING [localhost-startStop-3] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-53] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  244. java.lang.Thread.sleep(Native Method)
  245. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  246. 12-Feb-2016 01:17:31.411 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8008"]
  247. 12-Feb-2016 01:17:31.414 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  248. 12-Feb-2016 01:17:31.424 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8008"]
  249. 12-Feb-2016 01:17:31.425 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  250. 12-Feb-2016 01:17:34.154 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.30
  251. 12-Feb-2016 01:17:34.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 1 2015 22:30:46 UTC
  252. 12-Feb-2016 01:17:34.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.30.0
  253. 12-Feb-2016 01:17:34.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  254. 12-Feb-2016 01:17:34.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-24-generic
  255. 12-Feb-2016 01:17:34.156 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: i386
  256. 12-Feb-2016 01:17:34.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-oracle/jre
  257. 12-Feb-2016 01:17:34.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_72-b15
  258. 12-Feb-2016 01:17:34.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  259. 12-Feb-2016 01:17:34.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  260. 12-Feb-2016 01:17:34.157 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  261. 12-Feb-2016 01:17:34.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  262. 12-Feb-2016 01:17:34.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  263. 12-Feb-2016 01:17:34.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/opt/tomcat/endorsed
  264. 12-Feb-2016 01:17:34.158 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  265. 12-Feb-2016 01:17:34.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  266. 12-Feb-2016 01:17:34.159 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  267. 12-Feb-2016 01:17:34.159 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/i386:/lib:/usr/lib
  268. 12-Feb-2016 01:17:34.423 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8008"]
  269. 12-Feb-2016 01:17:34.447 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  270. 12-Feb-2016 01:17:34.451 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  271. 12-Feb-2016 01:17:34.452 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  272. 12-Feb-2016 01:17:34.453 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 911 ms
  273. 12-Feb-2016 01:17:34.507 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
  274. 12-Feb-2016 01:17:34.507 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.30
  275. 12-Feb-2016 01:17:34.557 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs.war
  276. 12-Feb-2016 01:17:34.580 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  277. 12-Feb-2016 01:17:39.969 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  278. 12-Feb-2016 01:17:45.085 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs.war has finished in 10,527 ms
  279. 12-Feb-2016 01:17:45.086 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/host-manager
  280. 12-Feb-2016 01:17:45.131 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/host-manager has finished in 45 ms
  281. 12-Feb-2016 01:17:45.131 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/manager
  282. 12-Feb-2016 01:17:45.200 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/manager has finished in 69 ms
  283. 12-Feb-2016 01:17:45.200 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/docs
  284. 12-Feb-2016 01:17:45.224 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/docs has finished in 24 ms
  285. 12-Feb-2016 01:17:45.224 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/ROOT
  286. 12-Feb-2016 01:17:45.249 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/ROOT has finished in 25 ms
  287. 12-Feb-2016 01:17:45.249 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/examples
  288. 12-Feb-2016 01:17:45.503 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/examples has finished in 254 ms
  289. 12-Feb-2016 01:17:45.512 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8008"]
  290. 12-Feb-2016 01:17:45.523 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  291. 12-Feb-2016 01:17:45.526 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 11073 ms
  292. 12-Feb-2016 01:18:34.455 WARNING [http-nio-8008-exec-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  293. 12-Feb-2016 01:18:34.457 WARNING [http-nio-8008-exec-2] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-5] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  294. java.lang.Thread.sleep(Native Method)
  295. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  296. 12-Feb-2016 01:22:56.084 INFO [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.startup.HostConfig.undeploy Undeploying context [/openmrs]
  297. 12-Feb-2016 01:22:56.149 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesJdbc The web application [openmrs] registered the JDBC driver [com.mysql.jdbc.Driver] but failed to unregister it when the web application was stopped. To prevent a memory leak, the JDBC Driver has been forcibly unregistered.
  298. 12-Feb-2016 01:22:56.150 WARNING [ContainerBackgroundProcessor[StandardEngine[Catalina]]] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs] appears to have started a thread named [Thread-7] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  299. java.lang.Thread.sleep(Native Method)
  300. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  301. 12-Feb-2016 01:22:56.188 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs1.war
  302. 12-Feb-2016 01:22:56.191 WARNING [localhost-startStop-2] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  303. 12-Feb-2016 01:23:01.137 INFO [localhost-startStop-2] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs1.war has finished in 4,949 ms
  304. 12-Feb-2016 01:23:29.584 INFO [main] org.apache.catalina.core.StandardServer.await A valid shutdown command was received via the shutdown port. Stopping the Server instance.
  305. 12-Feb-2016 01:23:29.585 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["http-nio-8008"]
  306. 12-Feb-2016 01:23:29.640 INFO [main] org.apache.coyote.AbstractProtocol.pause Pausing ProtocolHandler ["ajp-nio-8009"]
  307. 12-Feb-2016 01:23:29.691 INFO [main] org.apache.catalina.core.StandardService.stopInternal Stopping service Catalina
  308. 12-Feb-2016 01:23:29.778 WARNING [localhost-startStop-3] org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads The web application [openmrs1] appears to have started a thread named [Thread-8] but has failed to stop it. This is very likely to create a memory leak. Stack trace of thread:
  309. java.lang.Thread.sleep(Native Method)
  310. org.apache.log4j.helpers.FileWatchdog.run(FileWatchdog.java:104)
  311. 12-Feb-2016 01:23:29.806 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["http-nio-8008"]
  312. 12-Feb-2016 01:23:29.808 INFO [main] org.apache.coyote.AbstractProtocol.stop Stopping ProtocolHandler ["ajp-nio-8009"]
  313. 12-Feb-2016 01:23:29.808 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["http-nio-8008"]
  314. 12-Feb-2016 01:23:29.809 INFO [main] org.apache.coyote.AbstractProtocol.destroy Destroying ProtocolHandler ["ajp-nio-8009"]
  315. 12-Feb-2016 01:23:54.119 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/8.0.30
  316. 12-Feb-2016 01:23:54.121 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Dec 1 2015 22:30:46 UTC
  317. 12-Feb-2016 01:23:54.121 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 8.0.30.0
  318. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux
  319. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 3.13.0-24-generic
  320. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: i386
  321. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-7-oracle/jre
  322. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_72-b15
  323. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation
  324. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /opt/tomcat
  325. 12-Feb-2016 01:23:54.122 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /opt/tomcat
  326. 12-Feb-2016 01:23:54.123 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/opt/tomcat/conf/logging.properties
  327. 12-Feb-2016 01:23:54.123 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
  328. 12-Feb-2016 01:23:54.123 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.endorsed.dirs=/opt/tomcat/endorsed
  329. 12-Feb-2016 01:23:54.123 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/opt/tomcat
  330. 12-Feb-2016 01:23:54.123 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/opt/tomcat
  331. 12-Feb-2016 01:23:54.124 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/opt/tomcat/temp
  332. 12-Feb-2016 01:23:54.124 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /usr/java/packages/lib/i386:/lib:/usr/lib
  333. 12-Feb-2016 01:23:54.372 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8008"]
  334. 12-Feb-2016 01:23:54.397 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  335. 12-Feb-2016 01:23:54.400 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"]
  336. 12-Feb-2016 01:23:54.402 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read
  337. 12-Feb-2016 01:23:54.403 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 945 ms
  338. 12-Feb-2016 01:23:54.461 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service Catalina
  339. 12-Feb-2016 01:23:54.462 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/8.0.30
  340. 12-Feb-2016 01:23:54.515 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deploying web application archive /opt/tomcat/webapps/openmrs1.war
  341. 12-Feb-2016 01:23:54.538 WARNING [localhost-startStop-1] org.apache.catalina.startup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting property 'antiJARLocking' to 'true' did not find a matching property.
  342. 12-Feb-2016 01:24:00.201 INFO [localhost-startStop-1] org.apache.jasper.servlet.TldScanner.scanJars At least one JAR was scanned for TLDs yet contained no TLDs. Enable debug logging for this logger for a complete list of JARs that were scanned but no TLDs were found in them. Skipping unneeded JARs during scanning can improve startup time and JSP compilation time.
  343. 12-Feb-2016 01:24:01.233 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployWAR Deployment of web application archive /opt/tomcat/webapps/openmrs1.war has finished in 6,717 ms
  344. 12-Feb-2016 01:24:01.235 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/host-manager
  345. 12-Feb-2016 01:24:01.281 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/host-manager has finished in 45 ms
  346. 12-Feb-2016 01:24:01.281 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/manager
  347. 12-Feb-2016 01:24:01.345 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/manager has finished in 64 ms
  348. 12-Feb-2016 01:24:01.346 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/docs
  349. 12-Feb-2016 01:24:01.372 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/docs has finished in 25 ms
  350. 12-Feb-2016 01:24:01.372 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/ROOT
  351. 12-Feb-2016 01:24:01.397 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/ROOT has finished in 24 ms
  352. 12-Feb-2016 01:24:01.397 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory /opt/tomcat/webapps/examples
  353. 12-Feb-2016 01:24:01.657 INFO [localhost-startStop-1] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory /opt/tomcat/webapps/examples has finished in 260 ms
  354. 12-Feb-2016 01:24:01.723 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8008"]
  355. 12-Feb-2016 01:24:01.748 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"]
  356. 12-Feb-2016 01:24:01.759 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 7356 ms
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