API tools faq
paste
Advertisement
Guest User

bamreadcount.cpp:undefined reference to boost:program_option

a guest
Feb 11th, 2014
302
0
Never
Add comment
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 31.77 KB | None | 0 0
raw download clone embed print report diff
  1. sudo cmake28 /path/to/bam-readcount
  2. -- The C compiler identification is GNU 4.4.7
  3. -- The CXX compiler identification is GNU 4.4.7
  4. -- Check for working C compiler: /usr/bin/cc
  5. -- Check for working C compiler: /usr/bin/cc -- works
  6. -- Detecting C compiler ABI info
  7. -- Detecting C compiler ABI info - done
  8. -- Check for working CXX compiler: /usr/bin/c++
  9. -- Check for working CXX compiler: /usr/bin/c++ -- works
  10. -- Detecting CXX compiler ABI info
  11. -- Detecting CXX compiler ABI info - done
  12. -- Looking for include file pthread.h
  13. -- Looking for include file pthread.h - found
  14. -- Looking for pthread_create
  15. -- Looking for pthread_create - not found
  16. -- Looking for pthread_create in pthreads
  17. -- Looking for pthread_create in pthreads - not found
  18. -- Looking for pthread_create in pthread
  19. -- Looking for pthread_create in pthread - found
  20. -- Found Threads: TRUE
  21. No CMAKE_BUILD_TYPE specified, defaulting to release
  22. -- Boost version: 1.54.0
  23. -- Found the following Boost libraries:
  24. -- program_options
  25. -- Found ZLIB: /usr/local/lib/libz.so (found version "1.2.3")
  26. -- Boost version: 1.54.0
  27. -- Could NOT find GTest (missing: GTEST_INCLUDE_DIR)
  28. Google Test framework not found, no tests will be built
  29. GTest is available at http://code.google.com/p/googletest/
  30. Ubuntu users can likely sudo apt-get install gtest
  31. -- Configuring done
  32. -- Generating done
  33. -- Build files have been written to: /path/to/bam-readcount/build
  34. [build]$ sudo make deps
  35. Scanning dependencies of target samtools-lib
  36. [ 12%] Creating directories for 'samtools-lib'
  37. [ 25%] Performing download step (verify and extract) for 'samtools-lib'
  38. -- verifying file...
  39. file='/path/to/bam-readcount/vendor/samtools-0.1.19.tar.gz'
  40. -- verifying file... warning: did not verify file - no URL_HASH specified?
  41. -- extracting...
  42. src='/path/to/bam-readcount/vendor/samtools-0.1.19.tar.gz'
  43. dst='/path/to/bam-readcount/build/vendor/samtools'
  44. -- extracting... [tar xfz]
  45. -- extracting... [analysis]
  46. -- extracting... [rename]
  47. -- extracting... [clean up]
  48. -- extracting... done
  49. [ 37%] No patch step for 'samtools-lib'
  50. [ 50%] No update step for 'samtools-lib'
  51. [ 62%] Performing configure step for 'samtools-lib'
  52. Building samtools, build log at /path/to/bam-readcount/build/vendor/samtools/build.log
  53. [ 75%] Performing build step for 'samtools-lib'
  54. [ 87%] No install step for 'samtools-lib'
  55. [100%] Completed 'samtools-lib'
  56. [100%] Built target samtools-lib
  57. Scanning dependencies of target deps
  58. [100%] Built target deps
  59. [build]$ sudo make
  60. [ 44%] Built target samtools-lib
  61. [ 44%] Built target deps
  62. Scanning dependencies of target gtest160
  63. [ 50%] Creating directories for 'gtest160'
  64. [ 55%] Performing download step (verify and extract) for 'gtest160'
  65. -- verifying file...
  66. file='/path/to/bam-readcount/build-common/vendor/gtest-1.6.0.tar.gz'
  67. -- verifying file... warning: did not verify file - no URL_HASH specified?
  68. -- extracting...
  69. src='/path/to/bam-readcount/build-common/vendor/gtest-1.6.0.tar.gz'
  70. dst='/path/to/bam-readcount/build/vendor/src/gtest160'
  71. -- extracting... [tar xfz]
  72. -- extracting... [analysis]
  73. -- extracting... [rename]
  74. -- extracting... [clean up]
  75. -- extracting... done
  76. [ 61%] No patch step for 'gtest160'
  77. [ 66%] No update step for 'gtest160'
  78. [ 72%] Performing configure step for 'gtest160'
  79. -- The CXX compiler identification is GNU 4.4.7
  80. -- The C compiler identification is GNU 4.4.7
  81. -- Check for working CXX compiler: /usr/bin/c++
  82. -- Check for working CXX compiler: /usr/bin/c++ -- works
  83. -- Detecting CXX compiler ABI info
  84. -- Detecting CXX compiler ABI info - done
  85. -- Check for working C compiler: /usr/bin/cc
  86. -- Check for working C compiler: /usr/bin/cc -- works
  87. -- Detecting C compiler ABI info
  88. -- Detecting C compiler ABI info - done
  89. -- Found PythonInterp: /usr/bin/python (found version "2.6.6")
  90. -- Looking for include file pthread.h
  91. -- Looking for include file pthread.h - found
  92. -- Looking for pthread_create
  93. -- Looking for pthread_create - not found
  94. -- Looking for pthread_create in pthreads
  95. -- Looking for pthread_create in pthreads - not found
  96. -- Looking for pthread_create in pthread
  97. -- Looking for pthread_create in pthread - found
  98. -- Found Threads: TRUE
  99. -- Configuring done
  100. -- Generating done
  101. -- Build files have been written to: /path/to/bam-readcount/build/vendor/gtest160-build
  102. [ 77%] Performing build step for 'gtest160'
  103. Scanning dependencies of target gtest
  104. [ 50%] Building CXX object CMakeFiles/gtest.dir/src/gtest-all.cc.o
  105. Linking CXX static library libgtest.a
  106. [ 50%] Built target gtest
  107. Scanning dependencies of target gtest_main
  108. [100%] Building CXX object CMakeFiles/gtest_main.dir/src/gtest_main.cc.o
  109. Linking CXX static library libgtest_main.a
  110. [100%] Built target gtest_main
  111. [ 83%] No install step for 'gtest160'
  112. [ 88%] Completed 'gtest160'
  113. [ 88%] Built target gtest160
  114. Scanning dependencies of target bamrc
  115. [ 94%] Building CXX object build/src/lib/bamrc/CMakeFiles/bamrc.dir/BasicStat.cpp.o
  116. Linking CXX static library libbamrc.a
  117. [ 94%] Built target bamrc
  118. Scanning dependencies of target bam-readcount
  119. [100%] Building CXX object build/src/exe/bam-readcount/CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o
  120. Linking CXX executable ../../../../bin/bam-readcount
  121. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `main':
  122. bamreadcount.cpp:(.text+0x665): undefined reference to `boost::program_options::options_description::m_default_line_length'
  123. bamreadcount.cpp:(.text+0x6b1): undefined reference to `boost::program_options::options_description::options_description(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  124. bamreadcount.cpp:(.text+0x6e0): undefined reference to `boost::program_options::bool_switch(bool*)'
  125. bamreadcount.cpp:(.text+0x795): undefined reference to `boost::program_options::bool_switch(bool*)'
  126. bamreadcount.cpp:(.text+0xada): undefined reference to `boost::program_options::options_description::add_options()'
  127. bamreadcount.cpp:(.text+0xaf9): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, char const*)'
  128. bamreadcount.cpp:(.text+0xb10): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  129. bamreadcount.cpp:(.text+0xb27): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  130. bamreadcount.cpp:(.text+0xb3e): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  131. bamreadcount.cpp:(.text+0xb53): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  132. bamreadcount.cpp:(.text+0xb68): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  133. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:bamreadcount.cpp:(.text+0xb7d): more undefined references to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)' follow
  134. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `main':
  135. bamreadcount.cpp:(.text+0xbfa): undefined reference to `boost::program_options::options_description::options_description(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'
  136. bamreadcount.cpp:(.text+0xcd7): undefined reference to `boost::program_options::options_description::add_options()'
  137. bamreadcount.cpp:(.text+0xcf9): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  138. bamreadcount.cpp:(.text+0xd0e): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
  139. bamreadcount.cpp:(.text+0xd23): undefined reference to `boost::program_options::options_description::options_description(unsigned int, unsigned int)'
  140. bamreadcount.cpp:(.text+0xd38): undefined reference to `boost::program_options::options_description::add(boost::program_options::options_description const&)'
  141. bamreadcount.cpp:(.text+0xd48): undefined reference to `boost::program_options::options_description::add(boost::program_options::options_description const&)'
  142. bamreadcount.cpp:(.text+0xd55): undefined reference to `boost::program_options::positional_options_description::positional_options_description()'
  143. bamreadcount.cpp:(.text+0xd6c): undefined reference to `boost::program_options::positional_options_description::add(char const*, int)'
  144. bamreadcount.cpp:(.text+0xd83): undefined reference to `boost::program_options::positional_options_description::add(char const*, int)'
  145. bamreadcount.cpp:(.text+0xd90): undefined reference to `boost::program_options::variables_map::variables_map()'
  146. bamreadcount.cpp:(.text+0xdbc): undefined reference to `boost::program_options::detail::cmdline::set_options_description(boost::program_options::options_description const&)'
  147. bamreadcount.cpp:(.text+0xddc): undefined reference to `boost::program_options::detail::cmdline::set_positional_options(boost::program_options::positional_options_description const&)'
  148. bamreadcount.cpp:(.text+0xe01): undefined reference to `boost::program_options::store(boost::program_options::basic_parsed_options<char> const&, boost::program_options::variables_map&, bool)'
  149. bamreadcount.cpp:(.text+0xe99): undefined reference to `boost::program_options::notify(boost::program_options::variables_map&)'
  150. bamreadcount.cpp:(.text+0xf67): undefined reference to `boost::program_options::operator<<(std::basic_ostream<char, std::char_traits<char> >&, boost::program_options::options_description const&)'
  151. bamreadcount.cpp:(.text+0xf95): undefined reference to `vtable for boost::program_options::variables_map'
  152. bamreadcount.cpp:(.text+0x129e): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  153. bamreadcount.cpp:(.text+0x170d): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  154. bamreadcount.cpp:(.text+0x1fe8): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  155. bamreadcount.cpp:(.text+0x2041): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  156. bamreadcount.cpp:(.text+0x21ed): undefined reference to `boost::program_options::abstract_variables_map::operator[](std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  157. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)':
  158. bamreadcount.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x34): undefined reference to `boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)'
  159. bamreadcount.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x4a): undefined reference to `boost::program_options::error_with_option_name::error_with_option_name(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'
  160. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)':
  161. bamreadcount.cpp:(.text._ZN5boost15program_options11to_internalISsEESt6vectorISsSaISsEERKS2_IT_SaIS5_EE[std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > boost::program_options::to_internal<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)]+0x7d): undefined reference to `boost::program_options::to_internal(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  162. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::basic_command_line_parser<char>::basic_command_line_parser(int, char const* const*)':
  163. bamreadcount.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcEC2EiPKPKc[_ZN5boost15program_options25basic_command_line_parserIcEC5EiPKPKc]+0x50): undefined reference to `boost::program_options::detail::cmdline::cmdline(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&)'
  164. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<long, char>::name() const':
  165. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueIlcE4nameEv[boost::program_options::typed_value<long, char>::name() const]+0x31): undefined reference to `boost::program_options::arg'
  166. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<bool, char>::name() const':
  167. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE4nameEv[boost::program_options::typed_value<bool, char>::name() const]+0x31): undefined reference to `boost::program_options::arg'
  168. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::name() const':
  169. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueISscE4nameEv[boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::name() const]+0x31): undefined reference to `boost::program_options::arg'
  170. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<int, char>::name() const':
  171. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueIicE4nameEv[boost::program_options::typed_value<int, char>::name() const]+0x31): undefined reference to `boost::program_options::arg'
  172. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<bool, char>::xparse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const':
  173. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueIbcE6xparseERNS_3anyERKSt6vectorISsSaISsEE[boost::program_options::typed_value<bool, char>::xparse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const]+0x1c): undefined reference to `boost::program_options::validate(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool*, int)'
  174. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const':
  175. bamreadcount.cpp:(.text._ZNK5boost15program_options11typed_valueISscE6xparseERNS_3anyERKSt6vectorISsSaISsEE[boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const]+0x1c): undefined reference to `boost::program_options::validate(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> >*, int)'
  176. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::variables_map::~variables_map()':
  177. bamreadcount.cpp:(.text._ZN5boost15program_options13variables_mapD2Ev[_ZN5boost15program_options13variables_mapD5Ev]+0x13): undefined reference to `vtable for boost::program_options::variables_map'
  178. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::error_with_option_name::~error_with_option_name()':
  179. bamreadcount.cpp:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x19): undefined reference to `vtable for boost::program_options::error_with_option_name'
  180. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::validation_error::validation_error(boost::program_options::validation_error const&)':
  181. bamreadcount.cpp:(.text._ZN5boost15program_options16validation_errorC2ERKS1_[_ZN5boost15program_options16validation_errorC5ERKS1_]+0x38): undefined reference to `vtable for boost::program_options::error_with_option_name'
  182. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `std::basic_string<char, std::char_traits<char>, std::allocator<char> > const& boost::program_options::validators::get_single_string<char>(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool)':
  183. bamreadcount.cpp:(.text._ZN5boost15program_options10validators17get_single_stringIcEERKSbIT_St11char_traitsIS3_ESaIS3_EERKSt6vectorIS7_SaIS7_EEb[std::basic_string<char, std::char_traits<char>, std::allocator<char> > const& boost::program_options::validators::get_single_string<char>(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool)]+0xa0): undefined reference to `boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)'
  184. bamreadcount.cpp:(.text._ZN5boost15program_options10validators17get_single_stringIcEERKSbIT_St11char_traitsIS3_ESaIS3_EERKSt6vectorIS7_SaIS7_EEb[std::basic_string<char, std::char_traits<char>, std::allocator<char> > const& boost::program_options::validators::get_single_string<char>(std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool)]+0xb4): undefined reference to `boost::program_options::error_with_option_name::error_with_option_name(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'
  185. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::variables_map::~variables_map()':
  186. bamreadcount.cpp:(.text._ZN5boost15program_options13variables_mapD0Ev[_ZN5boost15program_options13variables_mapD5Ev]+0x13): undefined reference to `vtable for boost::program_options::variables_map'
  187. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `boost::program_options::basic_command_line_parser<char>::run()':
  188. bamreadcount.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcE3runEv[boost::program_options::basic_command_line_parser<char>::run()]+0x22): undefined reference to `boost::program_options::detail::cmdline::get_canonical_option_prefix()'
  189. bamreadcount.cpp:(.text._ZN5boost15program_options25basic_command_line_parserIcE3runEv[boost::program_options::basic_command_line_parser<char>::run()]+0x55): undefined reference to `boost::program_options::detail::cmdline::run()'
  190. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `void boost::program_options::validate<long, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, long*, long)':
  191. bamreadcount.cpp:(.text._ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorISbIT0_St11char_traitsIS5_ESaIS5_EESaIS9_EEPT_l[void boost::program_options::validate<long, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, long*, long)]+0x34): undefined reference to `boost::program_options::validators::check_first_occurrence(boost::any const&)'
  192. bamreadcount.cpp:(.text._ZN5boost15program_options8validateIlcEEvRNS_3anyERKSt6vectorISbIT0_St11char_traitsIS5_ESaIS5_EESaIS9_EEPT_l[void boost::program_options::validate<long, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, long*, long)]+0x514): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  193. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o: In function `void boost::program_options::validate<int, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int*, long)':
  194. bamreadcount.cpp:(.text._ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorISbIT0_St11char_traitsIS5_ESaIS5_EESaIS9_EEPT_l[void boost::program_options::validate<int, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int*, long)]+0x34): undefined reference to `boost::program_options::validators::check_first_occurrence(boost::any const&)'
  195. bamreadcount.cpp:(.text._ZN5boost15program_options8validateIicEEvRNS_3anyERKSt6vectorISbIT0_St11char_traitsIS5_ESaIS5_EESaIS9_EEPT_l[void boost::program_options::validate<int, char>(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, int*, long)]+0x4f4): undefined reference to `boost::program_options::invalid_option_value::invalid_option_value(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'
  196. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIlcEE[vtable for boost::program_options::typed_value<long, char>]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  197. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTIN5boost15program_options11typed_valueIlcEE[typeinfo for boost::program_options::typed_value<long, char>]+0x18): undefined reference to `typeinfo for boost::program_options::value_semantic_codecvt_helper<char>'
  198. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable for boost::program_options::validation_error]+0x20): undefined reference to `boost::program_options::error_with_option_name::what() const'
  199. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable for boost::program_options::validation_error]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  200. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTIN5boost15program_options16validation_errorE[typeinfo for boost::program_options::validation_error]+0x10): undefined reference to `typeinfo for boost::program_options::error_with_option_name'
  201. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable for boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x20): undefined reference to `boost::program_options::error_with_option_name::what() const'
  202. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable for boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  203. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error> >]+0x28): undefined reference to `boost::program_options::error_with_option_name::what() const'
  204. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error> >]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  205. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable for boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x20): undefined reference to `boost::program_options::error_with_option_name::what() const'
  206. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable for boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  207. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable for boost::program_options::invalid_option_value]+0x20): undefined reference to `boost::program_options::error_with_option_name::what() const'
  208. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable for boost::program_options::invalid_option_value]+0x30): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  209. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value> >]+0x28): undefined reference to `boost::program_options::error_with_option_name::what() const'
  210. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable for boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value> >]+0x38): undefined reference to `boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'
  211. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIbcEE[vtable for boost::program_options::typed_value<bool, char>]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  212. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTIN5boost15program_options11typed_valueIbcEE[typeinfo for boost::program_options::typed_value<bool, char>]+0x18): undefined reference to `typeinfo for boost::program_options::value_semantic_codecvt_helper<char>'
  213. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueISscEE[vtable for boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  214. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTIN5boost15program_options11typed_valueISscEE[typeinfo for boost::program_options::typed_value<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>]+0x18): undefined reference to `typeinfo for boost::program_options::value_semantic_codecvt_helper<char>'
  215. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIicEE[vtable for boost::program_options::typed_value<int, char>]+0x38): undefined reference to `boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'
  216. CMakeFiles/bam-readcount.dir/bamreadcount.cpp.o:(.rodata._ZTIN5boost15program_options11typed_valueIicEE[typeinfo for boost::program_options::typed_value<int, char>]+0x18): undefined reference to `typeinfo for boost::program_options::value_semantic_codecvt_helper<char>'
  217. collect2: ld returned 1 exit status
  218. make[2]: *** [bin/bam-readcount] Error 1
  219. make[1]: *** [build/src/exe/bam-readcount/CMakeFiles/bam-readcount.dir/all] Error 2
  220. make: *** [all] Error 2
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
Public Pastes
Advertisement
We use cookies for various purposes including analytics. By continuing to use Pastebin, you agree to our use of cookies as described in the Cookies Policy.  OK, I Understand
Not a member of Pastebin yet?
Sign Up, it unlocks many cool features!