Shapeit output

==> bkup/chr20_snp_sample_reference_intersection.p
20 20:63244 63244 C A 1 1 1 1 1 1 1 1 1 0 0 1 0 1
20 20:68396 68396 T C 1 1 1 1 1 1 1 1 1 1 1 1 1 1
20 20:76771 76771 T C 1 1 1 1 1 1 1 1 1 1 1 1 1 1
20 20:91088 91088 C T 1 1 1 1 1 0 1 1 1 1 0 1 1 1
20 20:100505 100505 C T 1 1 1 1 1 1 0 1 1 0 1 1 1
20 20:100699 100699 T C 1 1 1 1 1 1 1 1 1 1 1 1 1
20 20:102181 102181 C T 1 1 1 1 1 1 0 1 1 0 1 1 1
20 20:126149 126149 C T 1 1 1 1 1 1 0 1 1 0 1 1 1
20 20:126224 126224 G A 1 1 1 1 1 1 1 1 1 0 1 1 1
20 20:127720 127720 A C 0 1 0 0 0 1 1 0 0 0 1 0 0

==> bkup/chr20_snp_sample_reference_intersection.p
ID_1 ID_2 missing father mother sex plink_pheno
0 0 0 D D D B
11464_ATCACG 11464_ATCACG 0 0 0 0 -9
11465_CGATGT 11465_CGATGT 0 0 0 0 -9
11466_TTAGGC 11466_TTAGGC 0 0 0 0 -9
11467_TGACCA 11467_TGACCA 0 0 0 0 -9
11468_ACAGTG 11468_ACAGTG 0 0 0 0 -9
11469_GCCAAT 11469_GCCAAT 0 0 0 0 -9
11470_CAGATC 11470_CAGATC 0 0 0 0 -9
11471_ACTTGA 11471_ACTTGA 0 0 0 0 -9