dronte@globe:~/projects/parclip/scripts> ./run_mapping_bowtie.py
HEK293T
# reads processed: 4846321
# reads with at least one reported alignment: 1223442 (25.24%)
# reads that failed to align: 3480307 (71.81%)
# reads with alignments suppressed due to -m: 142572 (2.94%)
Reported 1814851 alignments to 1 output stream(s)
RKO
# reads processed: 3316130
# reads with at least one reported alignment: 962700 (29.03%)
# reads that failed to align: 2209279 (66.62%)
# reads with alignments suppressed due to -m: 144151 (4.35%)
Reported 1685179 alignments to 1 output stream(s)