sensors hdw rev 2

//#include liscenses

#include <SD.h>
#include <PString.h>//for pstrings
#include <Streaming.h>// << << <<
//#include <SoftwareSerial.h>
#define chipSelect  10
#define RS485RWPIN 7
#define XMISSION_BUFFER_SIZE 1000
//add defines for indicator LED on the final hardware revision

//insert RS485 code here

char GPSInBuf[90];
char weatherInBuf[90];
char radInBuf[40];
char IMUInBuf[40];
char GPSParseBuf[90];
char weatherParseBuf[90];
char radParseBuf[40];
char IMUParseBuf[40];
char *parseptr;

PString GPSInBuffer(GPSInBuf,90);
PString weatherInBuffer(weatherInBuf,90);
PString radInBuffer(radInBuf,40);
PString IMUInBuffer(IMUInBuf,40);

boolean GPSParseReady = false;
boolean weatherParseReady = false;
boolean radParseReady = false;
boolean IMUParseReady = false;
//---------------------------------------
//parse vars
//-----------------------------------------
//gps vars:
uint32_t timeHHMMSS;
int8_t fixQuality;
float longitude,lattitude,alt,trueHeading,magneticHeading,speedKnots,speedKMH;
boolean gpsFix=false;
//weather vars:
float barometricPressureInches,barometricPressureBars,airTemp,relativeHumidity,dewPoint;
float windDirectionTrue,windDirectionMagnetic,windSpeedKnots,windSpeedMetersPerSecond;
float weatherPitch,weatherRoll,weatherYaw,relativeWindChill,theoreticalWindChill;
//radation vars
float microSievertPerHour;
int countPerMinute;
//AHRS vars:
float yaw,pitch,roll;

//-------------------------------------------------
//transmission vars//
//-------------------------------------------------
char transmissionBuffer[XMISSION_BUFFER_SIZE];//large because all the data is a significant size
PString transmissionString(transmissionBuffer,XMISSION_BUFFER_SIZE);
long transmissionTimer=0;
long LCDTimer = 0;

boolean SDCardPresent = false;

void setup(){
  /*Setup is as follows:
   *GPS serial 2!!!!!DO NOT USE PORT 0 FOR GPS THIS CAUSES THE SD CARD TO NOT WORK AND MANY OTHER IISUES
   *IMU serial 3!!!!!REASON IS UNKNOWN AT THIS TIME
   *RAD serial 0
   *WTH serial 1
   */
  //please see appropriate data sheets
  //---------------------------------------
  //dont forget to list the data sheets!@!@!@!@!@!@
  //---------------------------------------
  //Rad/Complete Data Set Out config BEGIN
  //---------------------------------------
  Serial.begin(115200);
  Serial.println("Congifuration Start");
    Serial2.begin(9600);
  //---------------------------------------
  //Rad/Complete Data Set Out config END


  //weather station config
  //----------------------------------
  pinMode(RS485RWPIN,OUTPUT);
  digitalWrite(RS485RWPIN,HIGH);
  Serial1.begin(4800);
  Serial.println("waiting for weather station boot");
  for (int j=15;j>0;j--){
    Serial.println(j);
    delay(1000);
  }
  Serial.println("transmitting strings");
  Serial1.println("$PAMTC,HEATER,A*05");//enable heater
  delay(100);
  Serial1.println("$PAMTC,BAUD,38400*66");//set baud rate to 38400
  delay(100);
  Serial1.end();
  Serial1.begin(38400);
  delay(100);
  digitalWrite(RS485RWPIN,LOW);//Set mode to read now that config is done
  Serial.println("Weather station config complete");
  //---------------------------------------
  //GPS congig
  //currently this is going to run on 9600 and give default sentences


  Serial2.println("$PSRF100,1,115200,8,1,0*05");
  delay(100);//wait one second for config to take
  Serial2.end();
  Serial2.begin(115200);
  Serial2.println("$PSRF151,01*0F");

  //IMU config
  Serial3.begin(115200);
  //---------------------------------------------------------
  //SD card setup
  //-------------------------------------------------------------
  if (!SD.begin(chipSelect)) {
    Serial.println("Card failed, or not present");
    // don't do anything more:

  }
  else{
    Serial.println("card initialized.");
    SDCardPresent = true;
  }
  //initialize 5 hz transmission timer
  delay(1000);
  transmissionTimer = millis();
}

void loop(){
  getString();
  if(GPSParseReady == true){
    parseptr = GPSParseBuf;
    parseString();
    GPSParseReady = false;
  }
  if(weatherParseReady==true){
    parseptr = weatherParseBuf;
    parseString();
    weatherParseReady = false;
  }
  if(radParseReady==true){
    parseptr = radParseBuf;
    parseString();
    radParseReady = false;
  }
  if(IMUParseReady==true){
    parseptr = IMUParseBuf;
    parseString();
    IMUParseReady = false;
  }
  if(millis()- transmissionTimer >=200){
    transmission();
    transmissionTimer = millis();
  }
}