cluster .bashrc 27th oct

# .bashrc

# DO NOT SWITCH TO ZSH FROM .BASHRC FILE
#export SHELL=/bin/zsh
#exec /bin/zsh -l


# Source global definitions
# if [ -f /etc/bashrc ]; then
#	. /etc/bashrc
# fi

# User specific environment
# PATH="$HOME/.local/bin:$HOME/bin:$PATH"
# export PATH

# Uncomment the following line if you don't like systemctl's auto-paging feature:
# export SYSTEMD_PAGER=

#
#													                               88
#													                         ,d    88
#													                         88    88
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#													88P'    "8a ""     `Y8   88    88P'    "8a I8[    ""
#													88       d8 ,adPPPPP88   88    88       88  `"Y8ba,
#													88b,   ,a8" 88,    ,88   88,   88       88 aa    ]8I
#													88`YbbdP"'  `"8bbdP"Y8   "Y888 88       88 `"YbbdP"'
#													88
#													88
#


# User specific aliases and functions
# progs is for any programme that is work-related
# custom is for anything fun and extra

# add hdf5
export LD_LIBRARY_PATH=/scratch/s1/TjonnieLi/gmunu_libs/2020u4/mpiifort/hdf5/lib:$LD_LIBRARY_PATH

# for gmunu
export GMUNU_DIR=$HOME/progs/gmunu
export PATH=$HOME/miniconda3/bin:$PATH:$HOME/progs/gmunu:$HOME/progs/gmunu/tools:$HOME/custom/junest/bin:$HOME/.junest/usr/bin
# :/opt/share/anaconda/3-2018.12/bin
export PYTHONPATH=$GMUNU_DIR/tools/python:$PYTHONPATH
export PYTHONPATH=$HOME/bin/python:$PYTHONPATH
export PATH=$PYTHONPATH:$PATH


export RUNS=/scratch/s1/TjonnieLi/lii/simulations/runs
export PROFILES=/scratch/s1/TjonnieLi/lii/simulations/initial_profiles


export LII=/scratch/s1/TjonnieLi/lii
export PRJ=/lustre/project/TjonnieLi/lii/runs

export TESTS=$GMUNU_DIR/tests
export GRHD=$TESTS/grhd
export GRMHD=$TESTS/grmhd
export NS2D=$GRHD/neutron_star_cylindrical_2D
export FOCUS=$GRMHD/mag_neutron_star_cylindrical_2D
export OUTPUT=$FOCUS/outputruns
export XNS=$HOME/progs/xns

export MESASDK_ROOT=/users/s1155155707/custom/mesasdk


#									                       88
#									                       88
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#									8b         8b       d8 88 8b       d8 88       88 88          `"Y8ba,
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#									 `"Ybbd8"'  `"YbbdP"'  88  `"YbbdP"'   `"YbbdP'Y8 88         `"YbbdP"'
#


# ls colours
alias ls='ls --color'
LS_COLORS="di=1;36:ex=1;31:fi=0:ln=35:*.log=1;32:*.pdf=35:*.png=35:*.py=33:*.par=35:*.sh=3;35:*.t=34:*.rpm=90:*.tar=1;31"
export LS_COLORS



#						   ad88                                            88
#						  d8"                                        ,d    ""
#						  88                                         88
#						MM88MMM 88       88 8b,dPPYba,   ,adPPYba, MM88MMM 88  ,adPPYba,  8b,dPPYba,	,adPPYba,
#						  88    88       88 88P'   `"8a a8"     ""   88    88 a8"     "8a 88P'   `"8a 	I8[    ""
#						  88    88       88 88       88 8b           88    88 8b       d8 88       88  `"Y8ba,
#						  88    "8a,   ,a88 88       88 "8a,   ,aa   88,   88 "8a,   ,a8" 88       88 aa    ]8I
#						  88     `"YbbdP'Y8 88       88  `"Ybbd8"'   "Y888 88  `"YbbdP"'  88       88 `"YbbdP"'



# exec $HOME/bin/zsh -l


# autojump, "j"
[[ -s /users/s1155155707/.autojump/etc/profile.d/autojump.sh ]] && source /users/s1155155707/.autojump/etc/profile.d/autojump.sh


# custom commands
# function GMUNU() {
# 	conda activate gmunu
# }



function CHECK() {
  subl mod_usr.t para.par $(basename ${PWD%/*})_${PWD##*/}.sh
}

function DOFFT() {
	python extract_gw.py && python plot_gw.py && python extract_point.py && python fft_rho_c.py && python plot_combine.py && imgcat *.png
}

function ANIMATE() {
	python animate_B.py && python animate_Rho.py
}

function DOANALYSIS(){
    zsh $RUNS/analysis.sh
}

function PULLW() {
  scp -r -P 1922 liiyung.yeow@tgfli-s0.phy.cuhk.edu.hk:$1 $2
}

function PUSHW() {
  scp -r -P 1922 $1 liiyung.yeow@tgfli-s0.phy.cuhk.edu.hk:$2
}


function sq() {
	squeue
}


function SANDBOX() {
	ssh -R 52698:localhost:52698 -Y sandbox
}

function pp() {
    conda deactivate && conda activate postprocessing
}


alias sl='SLURM_TIME_FORMAT="%d %H:%M:%S" sacct -X --format=JobID%9,JobName%16,Priority%4,Submit%12,Start%12,Elapsed,NCPU%5,CPUTime,ExitCode,State'
# alias zsh='zsh & '

alias conda='$HOME/miniconda3/bin/conda'



# for gmunu
module load intel/2020u4
# module load python/3.6
# for xns with MESA
module load perl/5.26.2
module load zlib/1.2.11
# source /lustre/project/TjonnieLi/lii/miniconda3/bin
# source /lustre/project/TjonnieLi/lii/miniconda3/bin/activate
# source /opt/share/anaconda/3-2018.12/bin/activate
# source /opt/share/anaconda/3-2018.12/condabin/conda
# source /project/TjonnieLi/share/anaconda3/condabin/conda
# source $HOME/custom/envs/python36/bin/activate  # commented out by conda initialize
source $MESASDK_ROOT/bin/mesasdk_init.sh
# zsh





# experimental
# CUSTOM_PREFIX='❯'

# PS1=$'\x1b[33;1;3m$(basename "$CONDA_PREFIX") \x1b[31;1m$CUSTOM_PREFIX \x1b[0m'
# PS1=$'\x1b[31;1m$CUSTOM_PREFIX \x1b[0m'



# # >>> conda initialize >>>
# # !! Contents within this block are managed by 'conda init' !!
# __conda_setup="$('/opt/share/intel/2020u4/intelpython3/bin/conda' 'shell.bash' 'hook' 2> /dev/null)"
# if [ $? -eq 0 ]; then
#     eval "$__conda_setup"
# else
#     if [ -f "/opt/share/intel/2020u4/intelpython3/etc/profile.d/conda.sh" ]; then
#         . "/opt/share/intel/2020u4/intelpython3/etc/profile.d/conda.sh"
#     else
#         export PATH="/opt/share/intel/2020u4/intelpython3/bin:$PATH"
#     fi
# fi
# unset __conda_setup
# # <<< conda initialize <<<