Advertisement
Guest User

Untitled

a guest
Aug 28th, 2016
57
0
Never
Not a member of Pastebin yet? Sign Up, it unlocks many cool features!
text 0.53 KB | None | 0 0
  1. sed 's_|_-_g' uniprot_sprot.blastx.outfmt6.sig > uniprot_sprot.blastx.outfmt6.fixed.sig
  2. cut -f 1,2,17 uniprot_sprot.blastx.outfmt6.fixed.sig > uniprot_sprot.blastx.outfmt6.fixed.genes.sig
  3. touch uniprot_P_ast_annotations_mansour_hits100DE.tab
  4. for i in $(cut -f 2 P_ast_RNAseq_25pptv35ppt_top100DE.tab); do grep ${i/_/-} uniprot_sprot.blastx.outfmt6.fixed.genes.sig >> uniprot_P_ast_annotations_mansour_hits100DE.tab; done
  5. sed 's/\-/\_/1' uniprot_P_ast_annotations_mansour_hits100DE.tab > uniprot_P_ast_annotations_mansour_hits100DE.fixed.tab
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement