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$OMERO_HOME/components/blitz compilation problem

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  1. chris@NIA-LG-01778617 ~/src/openmicroscopy/components/blitz
  2. $ ../../build.py
  3. Buildfile: /Users/chris/src/openmicroscopy/components/blitz/build.xml
  4. Entering /Users/chris/src/openmicroscopy/components/blitz...
  5.  
  6. retrieve:
  7. :: Ivy 2.1.0 - 20090925235825 :: http://ant.apache.org/ivy/ ::
  8. :: loading settings :: file = /Users/chris/src/openmicroscopy/etc/ivysettings.xml
  9. conflict on /Users/chris/src/openmicroscopy/components/blitz/target/libs/perf4j.jar in [build]: 0.9.10 won
  10. conflict on /Users/chris/src/openmicroscopy/components/blitz/target/libs/ice.jar in [build]: 3.4.2 won
  11. conflict on /Users/chris/src/openmicroscopy/components/blitz/target/libs/commons-codec.jar in [build]: 1.6 won
  12. conflict on /Users/chris/src/openmicroscopy/components/blitz/target/libs/commons-io.jar in [build]: 1.4 won
  13.  
  14. _compile:
  15. Entering /Users/chris/src/openmicroscopy/components/blitz...
  16.  
  17. icegen1:
  18. Parsing 8 file(s).
  19. Parsing 8 file(s).
  20. Parsing 8 file(s).
  21. Parsing 8 file(s).
  22. Parsing 8 file(s).
  23.  
  24. icegen2:
  25. Copying 143 files to /Users/chris/src/openmicroscopy/components/blitz/generated
  26. Copying 143 files to /Users/chris/src/openmicroscopy/components/blitz/generated
  27. Copying 143 files to /Users/chris/src/openmicroscopy/components/blitz/generated
  28. Copying 143 files to /Users/chris/src/openmicroscopy/components/blitz/generated
  29. Copying 143 files to /Users/chris/src/openmicroscopy/components/blitz/generated
  30. Building with ICE_HOME=
  31. Building with SLICE2JAVA=slice2java
  32. Building with SLICE2PY=slice2py
  33. Building with SLICE2CPP=slice2cpp
  34. Building with SLICE2HTML=slice2html
  35. Building with SLICEPATH=/ice_home_is_unset_or_invalid
  36. Using env[ICE_HOME] = /Users/chris/src/openmicroscopy/components/blitz
  37. Using env[SLICEPATH] = /ice_home_is_unset_or_invalid
  38. Using env[SLICE2JAVA] = slice2java
  39. Using env[SLICE2PY] = slice2py
  40. Using env[SLICE2CPP] = slice2cpp
  41. Debug setting: True (debug)
  42. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  43. slice(["omero/FS.java"], ["omero/FS.ice"])
  44. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  45. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  46. slice(["omero/ModelF.java"], ["omero/ModelF.ice"])
  47. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  48. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  49. slice(["omero/Repositories.java"], ["omero/Repositories.ice"])
  50. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  51. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  52. slice(["omero/SharedResources.java"], ["omero/SharedResources.ice"])
  53. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  54. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  55. slice(["omero/Tables.java"], ["omero/Tables.ice"])
  56. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  57. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  58. slice(["omero/cmd/API.java"], ["omero/cmd/API.ice"])
  59. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  60. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  61. slice(["omero/cmd/Basic.java"], ["omero/cmd/Basic.ice"])
  62. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  63. os.chdir('/Users/chris/src/openmicroscopy/components/blitz/resources')
  64. slice(["omero/cmd/Graphs.java"], ["omero/cmd/Graphs.ice"])
  65. os.chdir('/Users/chris/src/openmicroscopy/components/blitz')
  66. Copying 1 file to /Users/chris/src/openmicroscopy/components/blitz/target
  67. Moving 1 file to /Users/chris/src/openmicroscopy/components/blitz/target/generated/src
  68. Moving 1 file to /Users/chris/src/openmicroscopy/components/blitz/target/generated/src/ome/services/blitz/fire
  69. Compiling 813 source files to /Users/chris/src/openmicroscopy/components/blitz/target/classes
  70. Note: Some input files use unchecked or unsafe operations.
  71. Note: Recompile with -Xlint:unchecked for details.
  72. Deleting: /Users/chris/src/openmicroscopy/components/blitz/_omero_build_1383892408.tmp
  73. Compiling 178 source files to /Users/chris/src/openmicroscopy/components/blitz/target/classes
  74. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:37: warning: [deprecation] omero.api.GatewayPrx in omero.api has been deprecated
  75. import omero.api.GatewayPrx;
  76. ^
  77. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:38: warning: [deprecation] omero.api.GatewayPrxHelper in omero.api has been deprecated
  78. import omero.api.GatewayPrxHelper;
  79. ^
  80. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:45: warning: [deprecation] omero.api.IDeletePrx in omero.api has been deprecated
  81. import omero.api.IDeletePrx;
  82. ^
  83. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:46: warning: [deprecation] omero.api.IDeletePrxHelper in omero.api has been deprecated
  84. import omero.api.IDeletePrxHelper;
  85. ^
  86. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:295: warning: [deprecation] omero.api.IDeletePrx in omero.api has been deprecated
  87. public IDeletePrx getDeleteService(Ice.Current current) throws ServerError {
  88. ^
  89. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:390: warning: [deprecation] omero.api.GatewayPrx in omero.api has been deprecated
  90. public GatewayPrx createGateway(Ice.Current current) throws ServerError {
  91. ^
  92. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:43: warning: [deprecation] omero.api._GatewayOperations in omero.api has been deprecated
  93. import omero.api._GatewayOperations;
  94. ^
  95. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:66: warning: [deprecation] omero.api._GatewayOperations in omero.api has been deprecated
  96. implements ServiceFactoryAware, _GatewayOperations, BlitzOnly
  97. ^
  98. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:24: warning: [deprecation] omero.api.AMD_IAdmin_changeGroup in omero.api has been deprecated
  99. import omero.api.AMD_IAdmin_changeGroup;
  100. ^
  101. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:25: warning: [deprecation] omero.api.AMD_IAdmin_changeOwner in omero.api has been deprecated
  102. import omero.api.AMD_IAdmin_changeOwner;
  103. ^
  104. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:28: warning: [deprecation] omero.api.AMD_IAdmin_changePermissions in omero.api has been deprecated
  105. import omero.api.AMD_IAdmin_changePermissions;
  106. ^
  107. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:122: warning: [deprecation] omero.api.AMD_IAdmin_changeGroup in omero.api has been deprecated
  108. public void changeGroup_async(AMD_IAdmin_changeGroup __cb, IObject obj,
  109. ^
  110. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:127: warning: [deprecation] omero.api.AMD_IAdmin_changeOwner in omero.api has been deprecated
  111. public void changeOwner_async(AMD_IAdmin_changeOwner __cb, IObject obj,
  112. ^
  113. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:142: warning: [deprecation] omero.api.AMD_IAdmin_changePermissions in omero.api has been deprecated
  114. public void changePermissions_async(AMD_IAdmin_changePermissions __cb,
  115. ^
  116. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ContainerI.java:23: warning: [deprecation] omero.api.AMD_IContainer_deleteDataObject in omero.api has been deprecated
  117. import omero.api.AMD_IContainer_deleteDataObject;
  118. ^
  119. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ContainerI.java:24: warning: [deprecation] omero.api.AMD_IContainer_deleteDataObjects in omero.api has been deprecated
  120. import omero.api.AMD_IContainer_deleteDataObjects;
  121. ^
  122. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ContainerI.java:74: warning: [deprecation] omero.api.AMD_IContainer_deleteDataObject in omero.api has been deprecated
  123. public void deleteDataObject_async(AMD_IContainer_deleteDataObject __cb,
  124. ^
  125. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ContainerI.java:81: warning: [deprecation] omero.api.AMD_IContainer_deleteDataObjects in omero.api has been deprecated
  126. public void deleteDataObjects_async(AMD_IContainer_deleteDataObjects __cb,
  127. ^
  128. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:24: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  129. import omero.api.delete.DeleteCommand;
  130. ^
  131. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:25: warning: [deprecation] omero.api.delete.DeleteReport in omero.api.delete has been deprecated
  132. import omero.api.delete.DeleteReport;
  133. ^
  134. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:26: warning: [deprecation] omero.api.delete._DeleteHandleOperations in omero.api.delete has been deprecated
  135. import omero.api.delete._DeleteHandleOperations;
  136. ^
  137. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:39: warning: [deprecation] omero.api.delete._DeleteHandleOperations in omero.api.delete has been deprecated
  138. _DeleteHandleOperations, Runnable {
  139. ^
  140. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:49: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  141. private final DeleteCommand[] commands;
  142. ^
  143. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:59: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  144. final AbstractFileSystemService afs, final DeleteCommand[] commands, int cancelTimeoutMs)
  145. ^
  146. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:75: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  147. final AbstractFileSystemService afs, final DeleteCommand[] commands, int cancelTimeoutMs,
  148. ^
  149. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:117: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  150. public DeleteCommand[] commands(Current __current) throws ServerError {
  151. ^
  152. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteHandleI.java:139: warning: [deprecation] omero.api.delete.DeleteReport in omero.api.delete has been deprecated
  153. public DeleteReport[] report(Current __current) throws ServerError {
  154. ^
  155. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:28: warning: [deprecation] omero.api.AMD_IDelete_availableCommands in omero.api has been deprecated
  156. import omero.api.AMD_IDelete_availableCommands;
  157. ^
  158. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:29: warning: [deprecation] omero.api.AMD_IDelete_checkImageDelete in omero.api has been deprecated
  159. import omero.api.AMD_IDelete_checkImageDelete;
  160. ^
  161. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:30: warning: [deprecation] omero.api.AMD_IDelete_deleteImage in omero.api has been deprecated
  162. import omero.api.AMD_IDelete_deleteImage;
  163. ^
  164. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:31: warning: [deprecation] omero.api.AMD_IDelete_deleteImages in omero.api has been deprecated
  165. import omero.api.AMD_IDelete_deleteImages;
  166. ^
  167. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:32: warning: [deprecation] omero.api.AMD_IDelete_deleteImagesByDataset in omero.api has been deprecated
  168. import omero.api.AMD_IDelete_deleteImagesByDataset;
  169. ^
  170. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:33: warning: [deprecation] omero.api.AMD_IDelete_deletePlate in omero.api has been deprecated
  171. import omero.api.AMD_IDelete_deletePlate;
  172. ^
  173. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:34: warning: [deprecation] omero.api.AMD_IDelete_deleteSettings in omero.api has been deprecated
  174. import omero.api.AMD_IDelete_deleteSettings;
  175. ^
  176. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:35: warning: [deprecation] omero.api.AMD_IDelete_previewImageDelete in omero.api has been deprecated
  177. import omero.api.AMD_IDelete_previewImageDelete;
  178. ^
  179. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:36: warning: [deprecation] omero.api.AMD_IDelete_queueDelete in omero.api has been deprecated
  180. import omero.api.AMD_IDelete_queueDelete;
  181. ^
  182. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:37: warning: [deprecation] omero.api._IDeleteOperations in omero.api has been deprecated
  183. import omero.api._IDeleteOperations;
  184. ^
  185. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:38: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  186. import omero.api.delete.DeleteCommand;
  187. ^
  188. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:39: warning: [deprecation] omero.api.delete.DeleteHandlePrx in omero.api.delete has been deprecated
  189. import omero.api.delete.DeleteHandlePrx;
  190. ^
  191. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:40: warning: [deprecation] omero.api.delete.DeleteHandlePrxHelper in omero.api.delete has been deprecated
  192. import omero.api.delete.DeleteHandlePrxHelper;
  193. ^
  194. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:55: warning: [deprecation] omero.api._IDeleteOperations in omero.api has been deprecated
  195. public class DeleteI extends AbstractAmdServant implements _IDeleteOperations,
  196. ^
  197. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:80: warning: [deprecation] omero.api.AMD_IDelete_checkImageDelete in omero.api has been deprecated
  198. public void checkImageDelete_async(AMD_IDelete_checkImageDelete __cb,
  199. ^
  200. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:85: warning: [deprecation] omero.api.AMD_IDelete_deleteImage in omero.api has been deprecated
  201. public void deleteImage_async(AMD_IDelete_deleteImage __cb, final long imageId,
  202. ^
  203. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:98: warning: [deprecation] omero.api.AMD_IDelete_previewImageDelete in omero.api has been deprecated
  204. public void previewImageDelete_async(AMD_IDelete_previewImageDelete __cb,
  205. ^
  206. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:103: warning: [deprecation] omero.api.AMD_IDelete_deleteImages in omero.api has been deprecated
  207. public void deleteImages_async(AMD_IDelete_deleteImages __cb,
  208. ^
  209. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:124: warning: [deprecation] omero.api.AMD_IDelete_deleteImagesByDataset in omero.api has been deprecated
  210. AMD_IDelete_deleteImagesByDataset __cb, long datasetId,
  211. ^
  212. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:130: warning: [deprecation] omero.api.AMD_IDelete_deleteSettings in omero.api has been deprecated
  213. public void deleteSettings_async(AMD_IDelete_deleteSettings __cb,
  214. ^
  215. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:141: warning: [deprecation] omero.api.AMD_IDelete_deletePlate in omero.api has been deprecated
  216. public void deletePlate_async(AMD_IDelete_deletePlate __cb,
  217. ^
  218. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:153: warning: [deprecation] omero.api.AMD_IDelete_queueDelete in omero.api has been deprecated
  219. public void queueDelete_async(final AMD_IDelete_queueDelete __cb,
  220. ^
  221. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:154: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  222. final DeleteCommand[] commands, final Current __current)
  223. ^
  224. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:168: warning: [deprecation] omero.api.AMD_IDelete_availableCommands in omero.api has been deprecated
  225. public void availableCommands_async(final AMD_IDelete_availableCommands __cb,
  226. ^
  227. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:190: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  228. public DeleteHandleI makeAndLaunchHandle(final Ice.Identity id, final DeleteCommand...commands) throws ServerError {
  229. ^
  230. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:195: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  231. final DeleteCommand...commands) throws ServerError {
  232. ^
  233. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:202: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  234. public void makeAndRun(final Ice.Identity id, final DeleteCommand...commands) throws ServerError {
  235. ^
  236. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/DeleteI.java:206: warning: [deprecation] omero.api.delete.DeleteCommand in omero.api.delete has been deprecated
  237. public void makeAndRun(final Ice.Current current, final Ice.Identity id, final DeleteCommand...commands) throws ServerError {
  238. ^
  239. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ExporterI.java:45: cannot find symbol
  240. symbol : class DOMUtil
  241. location: package ome.xml
  242. import ome.xml.DOMUtil;
  243. ^
  244. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/RenderingEngineI.java:48: warning: [deprecation] omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA in omero.api has been deprecated
  245. import omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA;
  246. ^
  247. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/RenderingEngineI.java:336: warning: [deprecation] omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA in omero.api has been deprecated
  248. AMD_RenderingEngine_renderAsPackedIntAsRGBA __cb, PlaneDef def,
  249. ^
  250. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/repo/BfRenderingEngineI.java:46: warning: [deprecation] omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA in omero.api has been deprecated
  251. import omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA;
  252. ^
  253. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/repo/BfRenderingEngineI.java:265: warning: [deprecation] omero.api.AMD_RenderingEngine_renderAsPackedIntAsRGBA in omero.api has been deprecated
  254. AMD_RenderingEngine_renderAsPackedIntAsRGBA __cb, PlaneDef def,
  255. ^
  256. /Users/chris/src/openmicroscopy/components/blitz/src/ome/formats/OMEROMetadataStoreClient.java:225: ome.formats.OMEROMetadataStoreClient is not abstract and does not override abstract method setXMLAnnotationAnnotator(java.lang.String,int) in loci.formats.meta.MetadataStore
  257. public class OMEROMetadataStoreClient
  258. ^
  259. /Users/chris/src/openmicroscopy/components/blitz/src/ome/formats/OMEROMetadataStoreClient.java:6745: warning: [deprecation] setRoot(java.lang.Object) in loci.formats.meta.MetadataStore has been deprecated
  260. public void setRoot(Object root)
  261. ^
  262. /Users/chris/src/openmicroscopy/components/blitz/src/ome/formats/OMEROMetadataStoreClient.java:1079: getRoot() in ome.formats.OMEROMetadataStoreClient cannot implement getRoot() in loci.formats.meta.MetadataStore; attempting to use incompatible return type
  263. found : java.lang.Object
  264. required: loci.formats.meta.MetadataRoot
  265. public Object getRoot()
  266. ^
  267. /Users/chris/src/openmicroscopy/components/blitz/src/ome/formats/OMEROMetadataStoreClient.java:874: cannot find symbol
  268. symbol : method asDate()
  269. location: class ome.xml.model.primitives.Timestamp
  270. return value == null? null : rtime(value.asDate().getTime());
  271. ^
  272. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:390: warning: [deprecation] createGateway(Ice.Current) in omero.api._ServiceFactoryOperations has been deprecated
  273. public GatewayPrx createGateway(Ice.Current current) throws ServerError {
  274. ^
  275. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:296: warning: [deprecation] omero.api.IDeletePrxHelper in omero.api has been deprecated
  276. return IDeletePrxHelper.uncheckedCast(getByName(DELETESERVICE.value,
  277. ^
  278. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ServiceFactoryI.java:391: warning: [deprecation] omero.api.GatewayPrxHelper in omero.api has been deprecated
  279. return GatewayPrxHelper.uncheckedCast(createByName(
  280. ^
  281. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:395: warning: [deprecation] keepAlive(Ice.Current) in omero.api._GatewayOperations has been deprecated
  282. public void keepAlive(Ice.Current current) throws omero.ServerError
  283. ^
  284. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:164: warning: [deprecation] deleteObject(omero.model.IObject,Ice.Current) in omero.api._GatewayOperations has been deprecated
  285. public void deleteObject(IObject row, Current __current) throws ServerError
  286. ^
  287. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:338: warning: [deprecation] saveAndReturnArray(java.util.List<omero.model.IObject>,Ice.Current) in omero.api._GatewayOperations has been deprecated
  288. public List<IObject> saveAndReturnArray(List<IObject> graph,
  289. ^
  290. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:356: warning: [deprecation] saveArray(java.util.List<omero.model.IObject>,Ice.Current) in omero.api._GatewayOperations has been deprecated
  291. public void saveArray(List<IObject> graph, Current __current)
  292. ^
  293. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:347: warning: [deprecation] saveAndReturnObject(omero.model.IObject,Ice.Current) in omero.api._GatewayOperations has been deprecated
  294. public IObject saveAndReturnObject(IObject obj, Current __current)
  295. ^
  296. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:365: warning: [deprecation] saveObject(omero.model.IObject,Ice.Current) in omero.api._GatewayOperations has been deprecated
  297. public void saveObject(IObject obj, Current __current) throws ServerError
  298. ^
  299. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:221: warning: [deprecation] getImageByName(java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  300. public List<Image> getImageByName(String imageName, Current __current)
  301. ^
  302. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:230: warning: [deprecation] getImageFromDatasetByName(long,java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  303. public List<Image> getImageFromDatasetByName(long datasetId,
  304. ^
  305. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:153: warning: [deprecation] createImage(int,int,int,int,java.util.List<java.lang.Integer>,omero.model.PixelsType,java.lang.String,java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  306. public long createImage(int sizeX, int sizeY, int sizeZ, int sizeT,
  307. ^
  308. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:123: warning: [deprecation] attachImageToDataset(omero.model.Dataset,omero.model.Image,Ice.Current) in omero.api._GatewayOperations has been deprecated
  309. public void attachImageToDataset(Dataset dataset, Image image,
  310. ^
  311. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:329: warning: [deprecation] getThumbnailSet(omero.RInt,omero.RInt,java.util.List<java.lang.Long>,Ice.Current) in omero.api._GatewayOperations has been deprecated
  312. public Map<Long, byte[]> getThumbnailSet(RInt sizeX, RInt sizeY,
  313. ^
  314. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:320: warning: [deprecation] getThumbnail(long,omero.RInt,omero.RInt,Ice.Current) in omero.api._GatewayOperations has been deprecated
  315. public byte[] getThumbnail(long pixelsId, RInt sizeX, RInt sizeY,
  316. ^
  317. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:373: warning: [deprecation] setActive(long,int,boolean,Ice.Current) in omero.api._GatewayOperations has been deprecated
  318. public void setActive(long pixelsId, int w, boolean active,
  319. ^
  320. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:311: warning: [deprecation] getRenderedImageMatrix(long,int,int,Ice.Current) in omero.api._GatewayOperations has been deprecated
  321. public int[][][] getRenderedImageMatrix(long pixelsId, int z, int t,
  322. ^
  323. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:302: warning: [deprecation] renderAsPackedIntAsRGBA(long,int,int,Ice.Current) in omero.api._GatewayOperations has been deprecated
  324. public int[] renderAsPackedIntAsRGBA(long pixelsId, int z, int t,
  325. ^
  326. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:293: warning: [deprecation] getRenderedImage(long,int,int,Ice.Current) in omero.api._GatewayOperations has been deprecated
  327. public int[] getRenderedImage(long pixelsId, int z, int t,
  328. ^
  329. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:249: warning: [deprecation] getPixelType(java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  330. public PixelsType getPixelType(String type, Current __current)
  331. ^
  332. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:258: warning: [deprecation] getPixelTypes(Ice.Current) in omero.api._GatewayOperations has been deprecated
  333. public List<PixelsType> getPixelTypes(Current __current) throws ServerError
  334. ^
  335. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:413: warning: [deprecation] updatePixels(omero.model.Pixels,Ice.Current) in omero.api._GatewayOperations has been deprecated
  336. public Pixels updatePixels(Pixels pixels, Current __current)
  337. ^
  338. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:404: warning: [deprecation] uploadPlane(long,int,int,int,byte[],Ice.Current) in omero.api._GatewayOperations has been deprecated
  339. public void uploadPlane(long pixelsId, int z, int c, int t,
  340. ^
  341. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:382: warning: [deprecation] copyImage(long,int,int,int,int,java.util.List<java.lang.Integer>,java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  342. public long copyImage(long imageId, int x, int y, int t, int z,
  343. ^
  344. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:133: warning: [deprecation] copyPixels(long,java.util.List<java.lang.Integer>,java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  345. public long copyPixels(long pixelsID, List<Integer> channelList,
  346. ^
  347. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:142: warning: [deprecation] copyPixelsXYTZ(long,int,int,int,int,java.util.List<java.lang.Integer>,java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  348. public long copyPixelsXYTZ(long pixelsID, int x, int y, int t, int z,
  349. ^
  350. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:266: warning: [deprecation] getPixels(long,Ice.Current) in omero.api._GatewayOperations has been deprecated
  351. public Pixels getPixels(long pixelsId, Current __current)
  352. ^
  353. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:429: warning: [deprecation] getPlane(long,int,int,int,Ice.Current) in omero.api._GatewayOperations has been deprecated
  354. public byte[] getPlane(long pixelsId, int z, int c, int t, Ice.Current current)
  355. ^
  356. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:181: warning: [deprecation] findByQuery(java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  357. public IObject findByQuery(String myQuery, Current __current)
  358. ^
  359. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:172: warning: [deprecation] findAllByQuery(java.lang.String,Ice.Current) in omero.api._GatewayOperations has been deprecated
  360. public List<IObject> findAllByQuery(String myQuery, Current __current)
  361. ^
  362. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:239: warning: [deprecation] getImages(omero.api.ContainerClass,java.util.List<java.lang.Long>,Ice.Current) in omero.api._GatewayOperations has been deprecated
  363. public List<Image> getImages(ContainerClass parentType, List<Long> ids,
  364. ^
  365. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:213: warning: [deprecation] getImage(long,Ice.Current) in omero.api._GatewayOperations has been deprecated
  366. public Image getImage(long id, Current __current) throws ServerError
  367. ^
  368. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:275: warning: [deprecation] getPixelsFromImage(long,Ice.Current) in omero.api._GatewayOperations has been deprecated
  369. public List<Pixels> getPixelsFromImage(long imageId, Current __current)
  370. ^
  371. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:190: warning: [deprecation] getDataset(long,boolean,Ice.Current) in omero.api._GatewayOperations has been deprecated
  372. public Dataset getDataset(long datasetId, boolean leaves, Current __current)
  373. ^
  374. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:204: warning: [deprecation] getDatasets(java.util.List<java.lang.Long>,boolean,Ice.Current) in omero.api._GatewayOperations has been deprecated
  375. public List<Dataset> getDatasets(List<Long> ids, boolean withLeaves,
  376. ^
  377. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/OmeroGateway.java:284: warning: [deprecation] getProjects(java.util.List<java.lang.Long>,boolean,Ice.Current) in omero.api._GatewayOperations has been deprecated
  378. public List<Project> getProjects(List<Long> ids, boolean withLeaves,
  379. ^
  380. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/gateway/services/impl/RenderingServiceImpl.java:259: warning: [deprecation] renderAsPackedIntAsRGBA(omero.romio.PlaneDef) in omero.api.RenderingEnginePrx has been deprecated
  381. return renderingEngine.renderAsPackedIntAsRGBA(def);
  382. ^
  383. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:142: warning: [deprecation] changePermissions_async(omero.api.AMD_IAdmin_changePermissions,omero.model.IObject,omero.model.Permissions,Ice.Current) in omero.api._IAdminOperations has been deprecated
  384. public void changePermissions_async(AMD_IAdmin_changePermissions __cb,
  385. ^
  386. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:122: warning: [deprecation] changeGroup_async(omero.api.AMD_IAdmin_changeGroup,omero.model.IObject,java.lang.String,Ice.Current) in omero.api._IAdminOperations has been deprecated
  387. public void changeGroup_async(AMD_IAdmin_changeGroup __cb, IObject obj,
  388. ^
  389. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/AdminI.java:127: warning: [deprecation] changeOwner_async(omero.api.AMD_IAdmin_changeOwner,omero.model.IObject,java.lang.String,Ice.Current) in omero.api._IAdminOperations has been deprecated
  390. public void changeOwner_async(AMD_IAdmin_changeOwner __cb, IObject obj,
  391. ^
  392. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/ExporterI.java:311: cannot find symbol
  393. symbol: variable DOMUtil
  394. DOMUtil.writeXML(fos, document);
  395. ^
  396. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/OmeroMetadata.java:136: getRoot() in ome.services.blitz.impl.OmeroMetadata cannot implement getRoot() in loci.formats.meta.MetadataStore; attempting to use incompatible return type
  397. found : java.lang.Object
  398. required: loci.formats.meta.MetadataRoot
  399. public Object getRoot()
  400. ^
  401. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/OmeroMetadata.java:135: method does not override or implement a method from a supertype
  402. @Override
  403. ^
  404. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/OmeroMetadata.java:425: cannot find symbol
  405. symbol : constructor Timestamp(java.util.Date)
  406. location: class ome.xml.model.primitives.Timestamp
  407. return o != null? new Timestamp(new java.util.Date(
  408. ^
  409. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/blitz/impl/OmeroMetadata.java:1146: cannot find symbol
  410. symbol : constructor Timestamp(java.sql.Date)
  411. location: class ome.xml.model.primitives.Timestamp
  412. return o != null? new Timestamp(
  413. ^
  414. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:128: array required, but java.util.List<loci.formats.CoreMetadata> found
  415. core[0].sizeX = sizeX;
  416. ^
  417. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:129: array required, but java.util.List<loci.formats.CoreMetadata> found
  418. core[0].sizeY = sizeY;
  419. ^
  420. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:130: array required, but java.util.List<loci.formats.CoreMetadata> found
  421. core[0].sizeZ = sizeZ;
  422. ^
  423. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:131: array required, but java.util.List<loci.formats.CoreMetadata> found
  424. core[0].sizeC = sizeC;
  425. ^
  426. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:132: array required, but java.util.List<loci.formats.CoreMetadata> found
  427. core[0].sizeT = sizeT;
  428. ^
  429. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:133: array required, but java.util.List<loci.formats.CoreMetadata> found
  430. core[0].rgb = false;
  431. ^
  432. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:134: array required, but java.util.List<loci.formats.CoreMetadata> found
  433. core[0].littleEndian = false;
  434. ^
  435. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:135: array required, but java.util.List<loci.formats.CoreMetadata> found
  436. core[0].dimensionOrder = dorder;
  437. ^
  438. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:136: array required, but java.util.List<loci.formats.CoreMetadata> found
  439. core[0].imageCount = planes;
  440. ^
  441. /Users/chris/src/openmicroscopy/components/blitz/src/ome/services/formats/OmeroReader.java:137: array required, but java.util.List<loci.formats.CoreMetadata> found
  442. core[0].pixelType = FormatTools.pixelTypeFromString(ptype);
  443. ^
  444. Note: Some input files additionally use or override a deprecated API.
  445. Note: Some input files use unchecked or unsafe operations.
  446. Note: Recompile with -Xlint:unchecked for details.
  447. 19 errors
  448. 100 warnings
  449.  
  450. BUILD FAILED
  451. /Users/chris/src/openmicroscopy/components/blitz/build.xml:47: The following error occurred while executing this line:
  452. /Users/chris/src/openmicroscopy/components/antlib/resources/lifecycle.xml:142: Compile failed; see the compiler error output for details.
  453.  
  454. Total time: 44 seconds
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