fatal: 'd:/BuildTools/CraftBukkit' does not appear to be a git repository
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
HEAD is now at 58abbcb CraftBukkit $ Wed Jul 29 02:12:32 CEST 2015
Resetting Spigot-Server to CraftBukkit...
HEAD is now at 58abbcb CraftBukkit $ Wed Jul 29 02:12:32 CEST 2015
  Applying patches to Spigot-Server...
You seem to have moved HEAD since the last 'am' failure.
Not rewinding to ORIG_HEAD
Applying: POM Changes
Applying: mc-dev imports
Using index info to reconstruct a base tree...
Falling back to patching base and 3-way merge...
Auto-merging src/main/java/net/minecraft/server/PacketHandshakingInSetProtocol.java
CONFLICT (add/add): Merge conflict in src/main/java/net/minecraft/server/PacketHandshakingInSetProtocol.java
Failed to merge in the changes.
Patch failed at 0002 mc-dev imports
The copy of the patch that failed is found in:
   e:/BuildTools/Spigot/Spigot-Server/.git/rebase-apply/patch
When you have resolved this problem, run "git am --continue".
If you prefer to skip this patch, run "git am --skip" instead.
To restore the original branch and stop patching, run "git am --abort".
  Something did not apply cleanly to Spigot-Server.
  Please review above details and finish the apply then
  save the changes with rebuildPatches.sh
Error compiling Spigot, are you running this jar via msysgit?
java.lang.RuntimeException: Error running command, return status !=0: [bash, applyPatches.sh]
	at org.spigotmc.builder.Builder.runProcess(Builder.java:517)
	at org.spigotmc.builder.Builder.main(Builder.java:400)