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- henk@crunchbang:~$ sudo R CMD javareconf
- Java interpreter : /usr/bin/java
- Java version : 1.6.0_18
- Java home path : /usr/lib/jvm/java-6-openjdk/jre
- Java compiler : /usr/bin/javac
- Java headers gen.: /usr/bin/javah
- Java archive tool: /usr/bin/jar
- trying to compile and link a JNI progam
- detected JNI cpp flags :
- detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
- gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c conftest.c -o conftest.o
- conftest.c:1:17: error: jni.h: No such file or directory
- conftest.c: In function ‘main’:
- conftest.c:4: warning: implicit declaration of function ‘JNI_CreateJavaVM’
- make: *** [conftest.o] Error 1
- Unable to compile a JNI program
- Java library path:
- JNI cpp flags :
- JNI linker flags :
- Updating Java configuration in /usr/lib64/R
- Done.
- # check java
- henk@crunchbang:~$ java -version
- java version "1.6.0_18"
- OpenJDK Runtime Environment (IcedTea6 1.8.13) (6b18-1.8.13-0+squeeze2)
- OpenJDK 64-Bit Server VM (build 14.0-b16, mixed mode)
- henk@crunchbang:~$ aptitude search "?provides(java-runtime)"
- i A default-jre - Standard Java or Java compatible Runtime
- i A default-jre-headless - Standard Java or Java compatible Runtime (headle
- p gcj-4.4-jre - Java runtime environment using GIJ/classpath
- p gcj-4.4-jre-headless - Java runtime environment using GIJ/classpath (he
- p gcj-jre - Java runtime environment using GIJ/classpath
- p gcj-jre-headless - Java runtime environment using GIJ/classpath (he
- i A openjdk-6-jre - OpenJDK Java runtime, using Hotspot JIT
- i A openjdk-6-jre-headless - OpenJDK Java runtime, using Hotspot JIT (headles
- i sun-java6-jre - Sun Java(TM) Runtime Environment (JRE) 6 (archit
- sudo add-apt-repository ppa:marutter/rrutter
- sudo add-apt-repository ppa:marutter/c2d4u
- sudo apt-get update
- sudo apt-get install openjdk-7-jdk
- ls /usr/lib/jvm
- sudo joe /etc/profile.d/javaenvvar.sh
- # JAVA environment variable
- # for openjdk-7-jdk in order to use the R package `qdap`.
- export JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64/jre
- export PATH=$PATH:$JAVA_HOME/bin
- echo $PATH
- echo $JAVA_HOME
- sudo R CMD javareconf
- Java interpreter : /usr/bin/java
- Java version : 1.7.0_65
- Java home path : /usr/lib/jvm/java-7-openjdk-amd64/jre
- Java compiler : /usr/bin/javac
- Java headers gen.: /usr/bin/javah
- Java archive tool: /usr/bin/jar
- /usr/lib/jvm//usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64
- /usr/lib/jvm//usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server
- sudo apt-get install r-cran-rjava
- sudo update-alternatives --config java
- sudo R
- > packageStatus()
- > update.packages()
- > install.packages("qdap", lib="/usr/lib/R/site-library")
- sudo rstudio-server stop
- sudo rstudio-server start
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