protino@protino:~/shogun/build$ make cookbook
Scanning dependencies of target cookbook_sphinx_static
[  0%] Copying cookbook Sphinx static overrides to /home/protino/shogun/build/doc/cookbook/_build
[  0%] Built target cookbook_sphinx_static
Scanning dependencies of target ctags
[ 20%] Generating tags
[ 20%] Built target ctags
Scanning dependencies of target meta_examples
[ 20%] Generating example regression-multiple_kernel_learning
Generating LALR tables
[ 40%] Generating example regression-kernel_ridge_regression
[ 40%] Generating example regression-random_forest_regression
[ 40%] Generating example regression-linear_ridge_regression
[ 40%] Generating example regression-support_vector_regression
[ 40%] Generating example gaussian_processes-gaussian_process_classifier
[ 40%] Generating example meta_api-vector_types
[ 40%] Generating example meta_api-literals
[ 40%] Generating example meta_api-matrix_types
[ 40%] Generating example meta_api-enums
[ 60%] Generating example binary_classifier-linear_svm
[ 60%] Generating example binary_classifier-kernel_svm
[ 60%] Generating example binary_classifier-lda
[ 60%] Generating example distance-euclidean
/home/protino/shogun/examples/meta/generator/translate.py:325: UserWarning: Several possible include paths for type EuclideanDistance.
Candidate paths: ['shogun/distance/EuclideanDistance.h', 'shogun/lib/external/falconn/wrapper/cpp_wrapper_impl.h']
Chosen: shogun/distance/EuclideanDistance.h
  unique_candidates[0]))
[ 60%] Generating example multiclass_classifier-multiclass_ecoc_random
[ 60%] Generating example multiclass_classifier-multiclass_logisticregression
[ 60%] Generating example multiclass_classifier-svm
[ 60%] Generating example multiclass_classifier-shareboost
[ 80%] Generating example multiclass_classifier-gaussian_naive_bayes
[ 80%] Generating example multiclass_classifier-multiclass_linearmachine
[ 80%] Generating example multiclass_classifier-linear_discriminant_analysis
[ 80%] Generating example multiclass_classifier-quadratic_discriminant_analysis
[ 80%] Generating example multiclass_classifier-relaxed_tree
[ 80%] Generating example multiclass_classifier-large_margin_nearest_neighbours
[ 80%] Generating example multiclass_classifier-knn
/home/protino/shogun/examples/meta/generator/translate.py:325: UserWarning: Several possible include paths for type EuclideanDistance.
Candidate paths: ['shogun/distance/EuclideanDistance.h', 'shogun/lib/external/falconn/wrapper/cpp_wrapper_impl.h']
Chosen: shogun/distance/EuclideanDistance.h
  unique_candidates[0]))
[ 80%] Generating example multiclass_classifier-random_forest
[100%] Generating example clustering-gmm
[100%] Generating example clustering-hierarchical
/home/protino/shogun/examples/meta/generator/translate.py:325: UserWarning: Several possible include paths for type EuclideanDistance.
Candidate paths: ['shogun/distance/EuclideanDistance.h', 'shogun/lib/external/falconn/wrapper/cpp_wrapper_impl.h']
Chosen: shogun/distance/EuclideanDistance.h
  unique_candidates[0]))
[100%] Generating example clustering-kmeans
/home/protino/shogun/examples/meta/generator/translate.py:325: UserWarning: Several possible include paths for type EuclideanDistance.
Candidate paths: ['shogun/distance/EuclideanDistance.h', 'shogun/lib/external/falconn/wrapper/cpp_wrapper_impl.h']
Chosen: shogun/distance/EuclideanDistance.h
  unique_candidates[0]))
[100%] Generating example neural_nets-feedforward_net_classification
[100%] Generating example neural_nets-feedforward_net_regression
[100%] Built target meta_examples
Scanning dependencies of target cookbook_copy_source
[100%] Copying cookbook Sphinx source to /home/protino/shogun/build/doc/cookbook/_build
[100%] Built target cookbook_copy_source
Scanning dependencies of target cookbook_make_quickstart_dir
[100%] Creating Quickstart folder at /home/protino/shogun/build/doc/cookbook/_build/quickstart
[100%] Built target cookbook_make_quickstart_dir
Scanning dependencies of target cookbook_sphinx_extensions
[100%] Copying cookbook Sphinx extensions to /home/protino/shogun/build/doc/cookbook/_build
[100%] Built target cookbook_sphinx_extensions
Scanning dependencies of target cookbook_sphinx_templates
[100%] Copying cookbook Sphinx templates to /home/protino/shogun/build/doc/cookbook/_build
[100%] Built target cookbook_sphinx_templates
Scanning dependencies of target cookbook
[100%] Generating _build/quickstart/interfaces.rst
[100%] Cookbook Sphinx building HTML

Exception occurred:
  File "/home/protino/shogun/build/doc/cookbook/_build/sgexample.py", line 155, in run
    os.path.abspath(target_fname)))
IOError: Generated listing /home/protino/shogun/build/examples/meta/python/gaussian_processes/gaussian_process_regression.py not found, it is expected to be created from the corresponding meta-example
The full traceback has been saved in /tmp/sphinx-err-ibn7bR.log, if you want to report the issue to the developers.
Please also report this if it was a user error, so that a better error message can be provided next time.
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
make[3]: *** [doc/cookbook/CMakeFiles/cookbook] Error 1
make[2]: *** [doc/cookbook/CMakeFiles/cookbook.dir/all] Error 2
make[1]: *** [doc/cookbook/CMakeFiles/cookbook.dir/rule] Error 2
make: *** [cookbook] Error 2