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error_log4

Uthiru
Sep 27th, 2011
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  1.  ==========================================================================================
  2.  About this error_log:
  3.  ---------------------
  4.  1. Has two_variable_id exportable/importables both on EWAS and Pathway datasets.
  5.  2. Used new dataset (v35_mart).
  6.  3. Query of interest Works ("All modified proteins in a pathway").
  7.  4. Uses original FilterList.pm module.
  8.  ==========================================================================================
  9.  
  10.  [Tue Sep 27 08:00:15 2011] [notice] Apache/2.2.15 (Unix) mod_perl/2.0.4 Perl/v5.10.1 configured -- resuming normal operations
  11. 2011/09/27 08:04:18 martview:65:DEBUG> initialized logger for martview
  12. 2011/09/27 08:04:18 BioMart.Web:176:DEBUG> Using existing registry passed to BioMart::Web constructor
  13. 2011/09/27 08:04:18 BioMart.Web:442:INFO> Creating new session and rewriting URL to http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d, then redirecting
  14. 2011/09/27 08:04:19 martview:65:DEBUG> initialized logger for martview
  15. 2011/09/27 08:04:19 BioMart.Web:176:DEBUG> Using existing registry passed to BioMart::Web constructor
  16. 2011/09/27 08:04:19 BioMart.Web:449:INFO> Restoring existing session 1fdcb717dd82b3be7b86f1833b03ef1d
  17. 2011/09/27 08:04:19 BioMart.Web:1450:INFO> Incoming CGI-params:
  18. $VAR1 = {};
  19. 2011/09/27 08:04:19 BioMart.Web:496:DEBUG> Saving parameters to session.
  20. 2011/09/27 08:04:19 BioMart.Web:260:DEBUG> Processing template main.tt
  21. 2011/09/27 08:04:19 BioMart.Web:264:INFO> START PROCESSING TEMPLATE main.tt
  22. 2011/09/27 08:04:19 BioMart.Web:271:INFO> !!!! 0.13 to get process template main.tt and print to SCALAR
  23. [Tue Sep 27 08:04:36 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[new_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  24. [Tue Sep 27 08:04:36 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[results_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  25. [Tue Sep 27 08:04:36 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[url_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  26. [Tue Sep 27 08:04:37 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[perl_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  27. [Tue Sep 27 08:04:37 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[xml_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  28. [Tue Sep 27 08:04:37 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[help_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  29. [Tue Sep 27 08:04:37 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[results_button_image_disabled], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  30. [Tue Sep 27 08:04:37 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[url_button_image_disabled], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  31. [Tue Sep 27 08:04:39 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[count_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  32. [Tue Sep 27 08:04:40 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[count_button_image_disabled], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  33. [Tue Sep 27 08:04:41 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[xml_button_image_disabled], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  34. [Tue Sep 27 08:04:47 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[perl_button_image_disabled], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/1fdcb717dd82b3be7b86f1833b03ef1d
  35. 2011/09/27 08:04:59 martservice:89:DEBUG> initialized logger for martservice
  36. 2011/09/27 08:04:59 martservice:997:WARN> RECEIVED QUERY:<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE Query><Query  virtualSchemaName = "default" header = "1" count = "" softwareVersion = "0.5" >      <Dataset name = "pathway" interface = "default" >               <Attribute name = "_displayname" />     </Dataset></Query>
  37. 2011/09/27 08:04:59 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    _displayname    main
  38. 2011/09/27 08:04:59 BioMart.QueryRunner:179:WARN> NO FILTERS
  39. 2011/09/27 08:04:59 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47a9df0) to bottom dataset pathway
  40. 2011/09/27 08:04:59 BioMart.QueryRunner:437:DEBUG> Added dataset pathway interface default to bottom dataset pathway
  41. 2011/09/27 08:04:59 BioMart.QueryRunner:465:DEBUG> Bottom dataset pathway query params are: 22
  42. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 200
  43. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  44. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  45. 2011/09/27 08:04:59 BioMart.QueryRunner:474:DEBUG> Bottom dataset pathway gave 200
  46. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 200,200
  47. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  48. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  49. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 400,400
  50. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  51. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  52. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 800,800
  53. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  54. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  55. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 1600,1600
  56. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  57. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  58. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 3200,3200
  59. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  60. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  61. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 6400,6400
  62. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  63. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  64. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 12800,12800
  65. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  66. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  67. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main._displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 13143,25600
  68. 2011/09/27 08:04:59 BioMart.DatasetI:1175:DEBUG> Got no results
  69. 2011/09/27 08:04:59 martservice:89:DEBUG> initialized logger for martservice
  70. 2011/09/27 08:04:59 martservice:997:WARN> RECEIVED QUERY:<?xml version="1.0" encoding="UTF-8"?><!DOCTYPE Query><Query  virtualSchemaName = "default" header = "1" count = "" softwareVersion = "0.5" >      <Dataset name = "pathway" interface = "default" >               <Attribute name = "species__displayname" />     </Dataset></Query>
  71. 2011/09/27 08:04:59 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    species__displayname    main
  72. 2011/09/27 08:04:59 BioMart.QueryRunner:179:WARN> NO FILTERS
  73. 2011/09/27 08:04:59 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47aa078) to bottom dataset pathway
  74. 2011/09/27 08:04:59 BioMart.QueryRunner:437:DEBUG> Added dataset pathway interface default to bottom dataset pathway
  75. 2011/09/27 08:04:59 BioMart.QueryRunner:465:DEBUG> Bottom dataset pathway query params are: 22
  76. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 200
  77. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  78. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  79. 2011/09/27 08:04:59 BioMart.QueryRunner:474:DEBUG> Bottom dataset pathway gave 200
  80. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 200,200
  81. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  82. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  83. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 400,400
  84. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  85. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  86. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 800,800
  87. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  88. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  89. 2011/09/27 08:04:59 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 1600,1600
  90. 2011/09/27 08:04:59 BioMart.DatasetI:1174:DEBUG> Got results
  91. 2011/09/27 08:04:59 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  92. 2011/09/27 08:05:00 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 3200,3200
  93. 2011/09/27 08:05:00 BioMart.DatasetI:1174:DEBUG> Got results
  94. 2011/09/27 08:05:00 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  95. 2011/09/27 08:05:00 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 6400,6400
  96. 2011/09/27 08:05:00 BioMart.DatasetI:1174:DEBUG> Got results
  97. 2011/09/27 08:05:00 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  98. 2011/09/27 08:05:00 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 12800,12800
  99. 2011/09/27 08:05:00 BioMart.DatasetI:1174:DEBUG> Got results
  100. 2011/09/27 08:05:00 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  101. 2011/09/27 08:05:00 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.species__displayname FROM test_reactome_mart.pathway__pathway__main main LIMIT 13143,25600
  102. 2011/09/27 08:05:00 BioMart.DatasetI:1175:DEBUG> Got no results
  103. 2011/09/27 08:06:08 martview:65:DEBUG> initialized logger for martview
  104. 2011/09/27 08:06:08 BioMart.Web:176:DEBUG> Using existing registry passed to BioMart::Web constructor
  105. 2011/09/27 08:06:08 BioMart.Web:442:INFO> Creating new session and rewriting URL to http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5, then redirecting
  106. 2011/09/27 08:06:14 martview:68:DEBUG> Using existing logger Log::Log4perl::Logger=HASH(0x1020d288)
  107. 2011/09/27 08:06:14 martview:98:DEBUG> Using existing BioMart::Web object
  108. 2011/09/27 08:06:14 BioMart.Web:449:INFO> Restoring existing session c11fc50a8aaa07db26514ce8ca8723f5
  109. 2011/09/27 08:06:14 BioMart.Web:1450:INFO> Incoming CGI-params:
  110. $VAR1 = {};
  111. 2011/09/27 08:06:14 BioMart.Web:496:DEBUG> Saving parameters to session.
  112. 2011/09/27 08:06:14 BioMart.Web:1973:DEBUG> Need to query datasets pathway,entitywithaccessionedsequence for total entry counts for each
  113. 2011/09/27 08:06:14 BioMart.Web:1989:DEBUG> FILTERLIST_STRING IS ARRAY(0x104dde98)
  114. 2011/09/27 08:06:14 BioMart.Web:1999:DEBUG> Enabled filters for dset pathway: pathway__filter.species_selection|pathway__filter._displayname
  115. 2011/09/27 08:06:14 BioMart.Web:2000:DEBUG> Enabled attributes for dset pathway: pathway__naive_attributes__attribute._displayname|pathway__naive_attributes__attribute.referencepeptidesequence__dm_identifier|pathway__naive_attributes__attribute.stableidentifier_identifier|pathway__naive_attributes__attribute.referencepeptidesequence__dm__displayname|pathway__naive_attributes__attribute.pathway_db_id
  116. 2011/09/27 08:06:14 BioMart.Web:546:DEBUG> #### STARTING extract_queryparams ####
  117. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute _displayname is an attributefilter
  118. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'pathway__naive_attributes__attributefilter._displayname', so is not an attributefilter
  119. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute _displayname instead
  120. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute referencepeptidesequence__dm_identifier is an attributefilter
  121. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'pathway__naive_attributes__attributefilter.referencepeptidesequence__dm_identifier', so is not an attributefilter
  122. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute referencepeptidesequence__dm_identifier instead
  123. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute stableidentifier_identifier is an attributefilter
  124. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'pathway__naive_attributes__attributefilter.stableidentifier_identifier', so is not an attributefilter
  125. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute stableidentifier_identifier instead
  126. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute referencepeptidesequence__dm__displayname is an attributefilter
  127. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'pathway__naive_attributes__attributefilter.referencepeptidesequence__dm__displayname', so is not an attributefilter
  128. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute referencepeptidesequence__dm__displayname instead
  129. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute pathway_db_id is an attributefilter
  130. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'pathway__naive_attributes__attributefilter.pathway_db_id', so is not an attributefilter
  131. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute pathway_db_id instead
  132. 2011/09/27 08:06:14 BioMart.Web:651:DEBUG> #### DEALING WITH pathway__filter.species_selection ####
  133. 2011/09/27 08:06:14 BioMart.Web:710:DEBUG> #### pathway__filter.species_selection HAS VALUE Homo sapiens####
  134. 2011/09/27 08:06:14 BioMart.Web:730:DEBUG> Adding values to filter species_selection: 'Homo sapiens'
  135. 2011/09/27 08:06:14 BioMart.Web:651:DEBUG> #### DEALING WITH pathway__filter._displayname ####
  136. 2011/09/27 08:06:14 BioMart.Web:710:DEBUG> #### pathway__filter._displayname HAS VALUE Degradation of beta-catenin by the destruction complex####
  137. 2011/09/27 08:06:14 BioMart.Web:730:DEBUG> Adding values to filter _displayname: 'Degradation of beta-catenin by the destruction complex'
  138. 2011/09/27 08:06:14 BioMart.Web:2037:DEBUG> Got outputformats html,txt,tsv,xls for attpage naive_attributes, in dataset pathway
  139. 2011/09/27 08:06:14 BioMart.Web:770:DEBUG> Getting dataset pathway in schema default from registry
  140. 2011/09/27 08:06:14 BioMart.Web:774:DEBUG> Using provided query object
  141. 2011/09/27 08:06:14 BioMart.Web:789:DEBUG> Processing attributes from dataset default.pathway
  142. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute _displayname
  143. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute referencepeptidesequence__dm_identifier
  144. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute stableidentifier_identifier
  145. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute referencepeptidesequence__dm__displayname
  146. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute pathway_db_id
  147. 2011/09/27 08:06:14 BioMart.Web:819:DEBUG> Processing filters from dataset default.pathway
  148. 2011/09/27 08:06:14 BioMart.Web:823:DEBUG> Enabling filter _displayname to query, setting values to Degradation of beta-catenin by the destruction complex
  149. 2011/09/27 08:06:14 BioMart.Web:823:DEBUG> Enabling filter species_selection to query, setting values to Homo sapiens
  150. 2011/09/27 08:06:14 BioMart.Web:1989:DEBUG> FILTERLIST_STRING IS ARRAY(0x1042f8c8)
  151. 2011/09/27 08:06:14 BioMart.Web:1999:DEBUG> Enabled filters for dset entitywithaccessionedsequence:
  152. 2011/09/27 08:06:14 BioMart.Web:2000:DEBUG> Enabled attributes for dset entitywithaccessionedsequence: entitywithaccessionedsequence__naive_attributes__attribute.mod_hasmodifiedresidue_psimod_identifier|entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue__displayname|entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue_coordinate|entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue_referencesequence_identifier
  153. 2011/09/27 08:06:14 BioMart.Web:546:DEBUG> #### STARTING extract_queryparams ####
  154. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute mod_hasmodifiedresidue_psimod_identifier is an attributefilter
  155. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'entitywithaccessionedsequence__naive_attributes__attributefilter.mod_hasmodifiedresidue_psimod_identifier', so is not an attributefilter
  156. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute mod_hasmodifiedresidue_psimod_identifier instead
  157. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute hasmodifiedresidue__displayname is an attributefilter
  158. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'entitywithaccessionedsequence__naive_attributes__attributefilter.hasmodifiedresidue__displayname', so is not an attributefilter
  159. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute hasmodifiedresidue__displayname instead
  160. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute hasmodifiedresidue_coordinate is an attributefilter
  161. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'entitywithaccessionedsequence__naive_attributes__attributefilter.hasmodifiedresidue_coordinate', so is not an attributefilter
  162. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute hasmodifiedresidue_coordinate instead
  163. 2011/09/27 08:06:14 BioMart.Web:569:DEBUG> Testing if attribute hasmodifiedresidue_referencesequence_identifier is an attributefilter
  164. 2011/09/27 08:06:14 BioMart.Web:613:DEBUG> Empty list of values for attributefilter 'entitywithaccessionedsequence__naive_attributes__attributefilter.hasmodifiedresidue_referencesequence_identifier', so is not an attributefilter
  165. 2011/09/27 08:06:14 BioMart.Web:615:DEBUG> Enabling attribute hasmodifiedresidue_referencesequence_identifier instead
  166. 2011/09/27 08:06:14 BioMart.Web:770:DEBUG> Getting dataset entitywithaccessionedsequence in schema default from registry
  167. 2011/09/27 08:06:14 BioMart.Web:774:DEBUG> Using provided query object
  168. 2011/09/27 08:06:14 BioMart.Web:789:DEBUG> Processing attributes from dataset default.entitywithaccessionedsequence
  169. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute mod_hasmodifiedresidue_psimod_identifier
  170. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute hasmodifiedresidue__displayname
  171. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute hasmodifiedresidue_coordinate
  172. 2011/09/27 08:06:14 BioMart.Web:793:DEBUG> Enabling attribute hasmodifiedresidue_referencesequence_identifier
  173. 2011/09/27 08:06:14 BioMart.Web:2137:DEBUG> Datasetcount added to query:   2
  174. 2011/09/27 08:06:14 BioMart.Web:2138:DEBUG> Datasetcount in session:       2
  175. 2011/09/27 08:06:14 BioMart.Web:2189:DEBUG> Query has both filters and attributes by now, let's go get some results!
  176. 2011/09/27 08:06:14 BioMart.Web:2212:DEBUG> Formatting data as HTML
  177. Use of uninitialized value in string eq at /path/local/BioMart0.7/biomart-perl/lib/BioMart/Web.pm line 2218.
  178. Use of uninitialized value in string eq at /path/local/BioMart0.7/biomart-perl/lib/BioMart/Web.pm line 2226.
  179. 2011/09/27 08:06:14 BioMart.Web:2412:DEBUG> Showing in browser.
  180. 2011/09/27 08:06:14 BioMart.Web:2426:DEBUG> Showing 10 entries in main panel
  181. 2011/09/27 08:06:14 BioMart.Web:2429:DEBUG> Sending query for execution to get full resultset
  182. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    _displayname    main
  183. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    referencepeptidesequence__dm_identifier pathway__referencepeptidesequence__dm
  184. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    stableidentifier_identifier main
  185. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    referencepeptidesequence__dm__displayname   pathway__referencepeptidesequence__dm
  186. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: pathway    pathway_db_id   main
  187. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: entitywithaccessionedsequence  mod_hasmodifiedresidue_psimod_identifier    main
  188. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: entitywithaccessionedsequence  hasmodifiedresidue__displayname main
  189. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: entitywithaccessionedsequence  hasmodifiedresidue_coordinate   main
  190. 2011/09/27 08:06:14 BioMart.QueryRunner:163:WARN> ATTRIBUTE: entitywithaccessionedsequence  hasmodifiedresidue_referencesequence_identifier main
  191. 2011/09/27 08:06:14 BioMart.QueryRunner:174:WARN> FILTER TABLE: pathway _displayname    main
  192. 2011/09/27 08:06:14 BioMart.QueryRunner:174:WARN> FILTER TABLE: pathway species_selection   main
  193. 2011/09/27 08:06:14 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 200
  194. 2011/09/27 08:06:14 BioMart.DatasetI:1174:DEBUG> Got results
  195. 2011/09/27 08:06:14 BioMart.DatasetI:1261:DEBUG> Attribute hash
  196. 2011/09/27 08:06:14 BioMart.DatasetI:1262:DEBUG> Before hash: 200
  197. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  198. 2011/09/27 08:06:14 BioMart.DatasetI:1269:DEBUG> After hash: 200
  199. 2011/09/27 08:06:14 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  200. 2011/09/27 08:06:14 BioMart.QueryRunner:631:DEBUG> Non-bottom dataset entitywithaccessionedsequence gave 200
  201. 2011/09/27 08:06:14 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47a9df0) to bottom dataset pathway
  202. 2011/09/27 08:06:14 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47af148) to bottom dataset pathway
  203. 2011/09/27 08:06:14 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47a9658) to bottom dataset pathway
  204. 2011/09/27 08:06:14 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47af658) to bottom dataset pathway
  205. 2011/09/27 08:06:14 BioMart.QueryRunner:415:DEBUG> Added attribute BioMart::Configuration::Attribute=HASH(0x47a9b68) to bottom dataset pathway
  206. 2011/09/27 08:06:14 BioMart.QueryRunner:425:DEBUG> Added filter BioMart::Configuration::ValueFilter=HASH(0x47b9c00) to bottom dataset pathway
  207. 2011/09/27 08:06:14 BioMart.QueryRunner:425:DEBUG> Added filter BioMart::Configuration::ValueFilter=HASH(0x47b7128) to bottom dataset pathway
  208. 2011/09/27 08:06:14 BioMart.QueryRunner:425:DEBUG> Added filter BioMart::Configuration::FilterList=HASH(0x108c2558) to bottom dataset pathway
  209. 2011/09/27 08:06:14 BioMart.QueryRunner:437:DEBUG> Added dataset pathway interface default to bottom dataset pathway
  210. 2011/09/27 08:06:14 BioMart.QueryRunner:465:DEBUG> Bottom dataset pathway query params are: 22
  211. 2011/09/27 08:06:14 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49327'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  212. 2011/09/27 08:06:14 BioMart.DatasetI:1174:DEBUG> Got results
  213. 2011/09/27 08:06:14 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  214. 2011/09/27 08:06:14 BioMart.DatasetI:1204:DEBUG> Before merge: 0
  215. 2011/09/27 08:06:14 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  216. 2011/09/27 08:06:14 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  217. 2011/09/27 08:06:14 BioMart.DatasetI:1505:DEBUG> Finished with rows: 0
  218. 2011/09/27 08:06:14 BioMart.DatasetI:1210:DEBUG> After merge: 0
  219. 2011/09/27 08:06:14 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  220. 2011/09/27 08:06:14 BioMart.QueryRunner:474:DEBUG> Bottom dataset pathway gave 0
  221. 2011/09/27 08:06:14 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 200,200
  222. 2011/09/27 08:06:14 BioMart.DatasetI:1174:DEBUG> Got results
  223. 2011/09/27 08:06:15 BioMart.DatasetI:1261:DEBUG> Attribute hash
  224. 2011/09/27 08:06:15 BioMart.DatasetI:1262:DEBUG> Before hash: 200
  225. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  226. 2011/09/27 08:06:15 BioMart.DatasetI:1269:DEBUG> After hash: 200
  227. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  228. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24941'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  229. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  230. 2011/09/27 08:06:15 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  231. 2011/09/27 08:06:15 BioMart.DatasetI:1204:DEBUG> Before merge: 0
  232. 2011/09/27 08:06:15 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  233. 2011/09/27 08:06:15 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  234. 2011/09/27 08:06:15 BioMart.DatasetI:1505:DEBUG> Finished with rows: 0
  235. 2011/09/27 08:06:15 BioMart.DatasetI:1210:DEBUG> After merge: 0
  236. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  237. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 400,400
  238. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  239. 2011/09/27 08:06:15 BioMart.DatasetI:1261:DEBUG> Attribute hash
  240. 2011/09/27 08:06:15 BioMart.DatasetI:1262:DEBUG> Before hash: 400
  241. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  242. 2011/09/27 08:06:15 BioMart.DatasetI:1269:DEBUG> After hash: 400
  243. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  244. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13415')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06400')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q00987')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04637')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30304')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q00534')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P10515')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P36957')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11182')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46976')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46976')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46976')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46976')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46976')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15488')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15488')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15488')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15488')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15488')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24298')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P17174')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00505')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04181')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11926')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P54687')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15382')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q96RQ3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8N5Z0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P17735')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q16719')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P34896')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11217')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11217')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P13807')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06737')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06737')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P54840')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07203')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11216')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11216'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  245. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  246. 2011/09/27 08:06:15 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  247. 2011/09/27 08:06:15 BioMart.DatasetI:1204:DEBUG> Before merge: 0
  248. 2011/09/27 08:06:15 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  249. 2011/09/27 08:06:15 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  250. 2011/09/27 08:06:15 BioMart.DatasetI:1505:DEBUG> Finished with rows: 0
  251. 2011/09/27 08:06:15 BioMart.DatasetI:1210:DEBUG> After merge: 0
  252. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  253. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 800,800
  254. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  255. 2011/09/27 08:06:15 BioMart.DatasetI:1261:DEBUG> Attribute hash
  256. 2011/09/27 08:06:15 BioMart.DatasetI:1262:DEBUG> Before hash: 800
  257. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  258. 2011/09/27 08:06:15 BioMart.DatasetI:1269:DEBUG> After hash: 800
  259. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  260. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q16881')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06213')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06213')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29353')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29353')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35568')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y4H2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99704')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30307')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30307')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30307')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O35280')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13315')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16104')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P38398')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14676')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O60934')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24385')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24385')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P17480')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P78527')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24928')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24928')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16455')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04049')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04049')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q07889')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02750')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02750')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02750')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P27361')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P27361')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P36507')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P28482')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P28482')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q01986')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P36506')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P09208')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8INB9')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q95V55')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8T9I6')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P91656')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9XZ56')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35754')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P10599')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47712')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q16566')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16220')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P25098')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12931')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63086')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63086')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35570')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Z1I0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O96017')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11802')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O14757')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q92934')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43521')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q96LC9')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00742')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P13726')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08709')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00740')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04070')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30273')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P55957')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30304')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07527')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30291')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30291')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O95235')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02241')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y266')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P40429')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11245')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q03405')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q03405')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q03405')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31750')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q61409')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13370')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q05469')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15304')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q06124')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99640')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9BQQ3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O60216')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UKT4'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  261. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  262. 2011/09/27 08:06:15 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  263. 2011/09/27 08:06:15 BioMart.DatasetI:1204:DEBUG> Before merge: 0
  264. 2011/09/27 08:06:15 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  265. 2011/09/27 08:06:15 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  266. 2011/09/27 08:06:15 BioMart.DatasetI:1505:DEBUG> Finished with rows: 0
  267. 2011/09/27 08:06:15 BioMart.DatasetI:1210:DEBUG> After merge: 0
  268. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  269. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 1600,1600
  270. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  271. 2011/09/27 08:06:15 BioMart.DatasetI:1261:DEBUG> Attribute hash
  272. 2011/09/27 08:06:15 BioMart.DatasetI:1262:DEBUG> Before hash: 1600
  273. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  274. 2011/09/27 08:06:15 BioMart.DatasetI:1269:DEBUG> After hash: 1600
  275. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  276. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q05469')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15304')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P43884')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8CGN5')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O60240')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9NP71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9NP71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9NP71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9NP71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16118')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14393')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14393')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14393')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22891')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22891')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22891')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8N3U4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8VIP2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8VIP2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8VIP2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8VIP2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q09137')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07953')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99MZ3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99MZ3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99MZ3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P54646')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9XTN2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49815')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49815')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13541')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P23443')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P62753')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00418')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q04637')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P23588')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08571')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q86XR7')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14653')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14653')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P51617')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04629')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q92529')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q92529')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P98077')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04602')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24741')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9QPN3')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05857')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q74127')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04324')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P03406')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18038')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P17753')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12479')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12478')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35959')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P20886')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04604')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q70627')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05858')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12481')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24103')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P03404')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P03404')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05854')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P03407')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05855')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P20867')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05860')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05859')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04600')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19545')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18801')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15829')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18092')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12480')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05856')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04601')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P20868')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19546')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04603')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12447')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19174')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46734')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P52564')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P45985')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99558')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15056')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9ULH0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06493')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P14635')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P14635')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18615')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00267')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P36897')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8WU20')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15759')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15796')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15796')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15796')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15796')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P84022')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P84022')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UM11')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UKT4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UKT4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UKT4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UKT4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05412')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18440')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9HAW4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UD71')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q07343')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15111')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15653')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P25963')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O70143')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00533')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00533')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29353'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  277. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  278. 2011/09/27 08:06:15 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  279. 2011/09/27 08:06:15 BioMart.DatasetI:1204:DEBUG> Before merge: 0
  280. 2011/09/27 08:06:15 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  281. 2011/09/27 08:06:15 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  282. 2011/09/27 08:06:15 BioMart.DatasetI:1505:DEBUG> Finished with rows: 0
  283. 2011/09/27 08:06:15 BioMart.DatasetI:1210:DEBUG> After merge: 0
  284. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  285. 2011/09/27 08:06:15 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT main.hasmodifiedresidue_referencesequence_identifier, main.referencednasequence_referencedatabase_ensembl_concat, main.mod_hasmodifiedresidue_psimod_identifier, main.hasmodifiedresidue__displayname, main.hasmodifiedresidue_coordinate, main.hasmodifiedresidue_referencesequence_identifier FROM test_reactome_mart.entitywithaccessionedsequence__itywithaccessionedsequence__main main LIMIT 3200,3200
  286. 2011/09/27 08:06:15 BioMart.DatasetI:1174:DEBUG> Got results
  287. 2011/09/27 08:06:15 BioMart.DatasetI:1261:DEBUG> Attribute hash
  288. 2011/09/27 08:06:15 BioMart.DatasetI:1262:DEBUG> Before hash: 3200
  289. Use of uninitialized value $rowKey in hash element at /path/local/BioMart0.7/biomart-perl/lib/BioMart/DatasetI.pm line 1624.
  290. 2011/09/27 08:06:15 BioMart.DatasetI:1269:DEBUG> After hash: 3200
  291. 2011/09/27 08:06:15 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  292. 2011/09/27 08:06:16 BioMart.Dataset.TableSet:736:INFO> QUERY SQL:  SELECT pathway__referencepeptidesequence__dm.referencedatabase_uniprot, pathway__referencednasequence__dm.referencedatabase_ensembl, main._displayname, test_reactome_mart.pathway__referencepeptidesequence__dm.identifier, main.stableidentifier_identifier, test_reactome_mart.pathway__referencepeptidesequence__dm._displayname, main.pathway_DB_ID_key FROM test_reactome_mart.pathway__referencednasequence__dm, test_reactome_mart.pathway__referencepeptidesequence__dm, test_reactome_mart.pathway__pathway__main main WHERE (main._displayname = 'Degradation of beta-catenin by the destruction complex') AND (main.species__displayname = 'Homo sapiens') AND (((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00533')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00533')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13480')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13480')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9NWQ8')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q63604')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q63604')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35739')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35739')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q03351')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q03351')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11345')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P10686')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P30285')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22681')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22681')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43609')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43597')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43597')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P09619')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16234')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31750')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9R1E0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9R1E0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46527')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P46527')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q16620')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04629')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04629')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q16644')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49137')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49137')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P38936')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24941')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P24941')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q01094')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00716')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06400')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43280')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19813')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8WU20')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22455')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22607')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22607')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P21802')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P21802')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P21802')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P21802')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P11362')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43559')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P08050')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P62318')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P62318')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P14678')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P14678')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P62314')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P62314')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q4QQS0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P51617')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P45983')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P45983')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35222')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35222')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35222')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35222')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P25054')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P25054')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02156')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35568')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35568')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q3UFB7')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P81122')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P35569')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q05655')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y4H2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y4H2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47196')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47196')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49841')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q92934')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q92934')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q63484')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q63484')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49840')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31749')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31749')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31749')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31749')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31749')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47197')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47197')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q6FI05')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15111')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P55211')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q00987')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O75582')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19419')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19419')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P40763')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P40763')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13164')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13164')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18266')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O89037')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O89037')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15759')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P41969')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18265')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P00387')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P98177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P98177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43524')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q12778')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q12778')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49815')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15418')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P51812')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9UBS0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P22736')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15349')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P18846')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02078')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q2MJT0')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q06413')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q96B36')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00763')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P54646')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13085')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99717')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q99717')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15198')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O15198')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P36894')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15797')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q15797')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00238')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31751')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31751')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31751')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31751')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P31751')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y243')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29474')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29474')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P29474')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q04759')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q04759')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06239')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P06239')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P20963')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13094')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q6PIZ9')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07766')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P43403')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P43403')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04234')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P19174')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P09693')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43561')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9BXL7')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43353')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O14920')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43318')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14393')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P07225')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P25963')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63241')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63241')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63241')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P63241')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9GZV4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9GZV4')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02763')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P49185')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q91Y86')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P04049')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P47809')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P52564')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P20711')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P16284')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q02858')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q60823')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13177')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q29502')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q29502')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q29502')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q29502')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q29502')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P68431')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01326')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01326')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01326')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01326')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01325')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01325')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01325')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01325')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43521')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O43521')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01308')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01308')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01308')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01308')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P01308')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P09917')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8NHY2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q8NHY2')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O00267')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q05397')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q05397')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P56945')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O60500')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P43146')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15311')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P15311')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P32004')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y6N7')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12931')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P12931')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14980')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q14980')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q9Y2I6')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'Q13131')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'O75460')) OR ((pathway__referencepeptidesequence__dm.referencedatabase_uniprot = 'P05198'))) AND main.pathway_db_id_key=pathway__referencednasequence__dm.pathway_db_id_key AND main.pathway_db_id_key=test_reactome_mart.pathway__referencepeptidesequence__dm.pathway_db_id_key AND main.pathway_db_id_key=pathway__referencepeptidesequence__dm.pathway_db_id_key LIMIT 200
  293. 2011/09/27 08:06:16 BioMart.DatasetI:1174:DEBUG> Got results
  294. 2011/09/27 08:06:16 BioMart.DatasetI:1203:DEBUG> Attribute merge using linkName: two_variable_id
  295. 2011/09/27 08:06:16 BioMart.DatasetI:1204:DEBUG> Before merge: 200
  296. 2011/09/27 08:06:16 BioMart.DatasetI:1292:DEBUG> Importable size: 2
  297. 2011/09/27 08:06:16 BioMart.DatasetI:1293:DEBUG> Link name: two_variable_id
  298. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  299. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  300. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  301. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  302. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  303. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  304. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  305. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  306. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  307. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  308. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  309. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  310. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  311. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  312. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  313. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  314. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  315. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  316. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  317. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  318. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  319. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  320. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  321. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  322. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  323. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  324. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  325. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  326. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  327. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  328. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  329. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  330. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  331. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  332. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  333. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  334. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  335. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  336. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  337. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  338. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  339. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  340. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  341. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  342. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  343. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  344. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  345. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  346. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  347. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  348. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  349. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  350. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  351. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  352. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  353. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  354. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  355. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  356. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  357. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  358. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  359. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  360. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  361. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  362. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  363. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  364. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  365. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  366. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  367. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  368. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  369. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  370. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  371. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  372. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  373. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  374. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  375. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  376. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  377. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  378. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  379. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  380. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  381. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  382. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  383. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  384. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  385. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  386. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  387. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  388. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  389. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  390. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  391. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  392. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  393. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  394. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  395. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  396. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  397. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  398. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  399. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  400. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  401. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  402. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  403. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  404. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  405. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  406. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  407. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  408. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  409. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  410. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  411. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  412. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  413. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  414. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  415. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  416. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  417. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  418. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  419. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  420. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  421. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  422. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  423. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  424. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  425. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  426. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  427. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  428. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  429. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  430. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  431. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  432. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  433. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  434. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  435. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  436. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  437. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  438. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  439. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  440. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  441. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  442. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  443. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  444. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  445. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  446. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  447. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  448. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  449. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  450. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  451. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  452. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  453. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  454. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  455. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  456. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  457. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  458. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  459. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  460. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  461. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  462. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  463. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  464. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  465. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  466. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  467. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  468. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  469. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  470. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  471. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  472. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  473. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  474. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  475. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  476. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  477. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  478. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  479. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  480. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  481. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  482. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  483. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  484. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  485. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  486. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  487. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  488. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  489. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  490. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  491. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  492. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  493. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  494. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  495. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  496. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  497. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  498. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  499. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  500. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  501. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  502. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  503. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  504. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  505. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  506. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  507. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  508. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  509. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  510. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  511. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  512. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  513. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  514. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  515. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  516. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  517. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  518. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  519. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  520. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  521. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  522. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  523. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  524. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  525. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  526. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  527. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  528. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  529. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  530. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  531. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  532. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  533. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  534. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  535. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  536. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  537. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  538. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  539. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  540. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  541. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  542. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  543. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  544. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  545. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  546. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  547. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  548. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  549. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  550. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  551. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  552. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  553. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  554. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  555. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  556. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  557. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  558. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  559. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  560. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  561. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  562. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  563. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  564. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  565. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  566. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  567. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  568. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  569. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  570. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  571. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  572. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  573. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  574. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  575. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  576. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  577. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  578. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  579. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  580. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  581. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  582. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  583. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  584. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  585. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  586. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  587. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  588. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  589. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  590. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  591. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  592. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  593. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  594. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  595. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  596. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  597. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  598. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  599. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  600. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  601. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  602. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  603. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  604. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  605. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  606. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  607. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  608. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  609. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  610. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  611. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  612. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  613. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  614. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  615. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  616. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  617. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  618. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  619. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  620. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  621. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  622. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  623. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  624. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  625. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  626. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  627. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  628. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  629. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  630. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  631. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  632. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  633. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  634. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  635. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  636. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  637. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  638. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  639. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  640. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  641. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  642. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  643. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  644. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  645. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  646. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  647. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  648. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  649. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  650. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  651. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  652. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  653. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  654. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  655. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  656. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  657. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  658. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  659. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  660. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  661. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  662. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  663. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  664. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  665. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  666. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  667. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  668. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  669. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  670. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  671. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  672. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  673. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  674. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  675. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  676. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  677. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  678. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  679. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  680. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  681. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  682. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  683. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  684. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  685. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  686. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  687. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  688. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  689. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  690. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  691. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  692. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  693. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  694. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  695. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  696. 2011/09/27 08:06:16 BioMart.DatasetI:1308:DEBUG> Appending P25054
  697. 2011/09/27 08:06:16 BioMart.DatasetI:1312:DEBUG> Final key string is: P25054
  698. 2011/09/27 08:06:16 BioMart.DatasetI:1404:WARN> Processing key: P25054
  699. 2011/09/27 08:06:16 BioMart.DatasetI:1405:WARN> This previous rows: 200
  700. 2011/09/27 08:06:16 BioMart.DatasetI:1505:DEBUG> Finished with rows: 200
  701. 2011/09/27 08:06:16 BioMart.DatasetI:1210:DEBUG> After merge: 200
  702. 2011/09/27 08:06:16 BioMart.DatasetI:1276:DEBUG> Returning defined has_data
  703. 2011/09/27 08:06:16 BioMart.Web:2497:DEBUG> Everything's fine
  704. 2011/09/27 08:06:16 BioMart.Web:2509:INFO> All Mart counts and main Mart-query executed in 1.272
  705. 2011/09/27 08:06:16 BioMart.Web:2512:DEBUG> Incoming SESSION-params:
  706. $VAR1 = bless( {
  707.                  '_STATUS' => 5,
  708.                  '_OBJECTS' => {
  709.                                  'serializer' => 'CGI::Session::Serialize::default',
  710.                                  'driver' => bless( {
  711.                                                       'DataColName' => 'a_session',
  712.                                                       'Directory' => '/path/local/BioMart0.7/biomart-perl/conf/sessions',
  713.                                                       'FileName' => 'cgisessions.db',
  714.                                                       'IdColName' => 'id',
  715.                                                       'TableName' => 'sessions',
  716.                                                       'UMask' => 432
  717.                                                     }, 'CGI::Session::Driver::db_file' )
  718.                                },
  719.                  '_CLAIMED_ID' => 'c11fc50a8aaa07db26514ce8ca8723f5',
  720.                  '_DATA' => {
  721.                               '__dataset' => undef,
  722.                               'lastquery_info' => {
  723.                                                     'timestamp' => '2011-09-27 08:06:14',
  724.                                                     'xml' => '<?xml version="1.0" encoding="UTF-8"?>
  725. <!DOCTYPE Query>
  726. <Query  virtualSchemaName = "default" limitStart = "" limitSize = "" count = "" softwareVersion = "0.6" requestId= "biomart-client">
  727.            
  728.     <Dataset name = "pathway" interface = "default" >
  729.         <Filter name = "_displayname" value = "Degradation of beta-catenin by the destruction complex"/>
  730.         <Filter name = "species_selection" value = "Homo sapiens"/>
  731.         <Attribute name = "_displayname" />
  732.         <Attribute name = "referencepeptidesequence__dm_identifier" />
  733.         <Attribute name = "stableidentifier_identifier" />
  734.         <Attribute name = "referencepeptidesequence__dm__displayname" />
  735.         <Attribute name = "pathway_db_id" />
  736.     </Dataset>
  737.            
  738.     <Dataset name = "entitywithaccessionedsequence" interface = "default" >
  739.         <Attribute name = "mod_hasmodifiedresidue_psimod_identifier" />
  740.         <Attribute name = "hasmodifiedresidue__displayname" />
  741.         <Attribute name = "hasmodifiedresidue_coordinate" />
  742.         <Attribute name = "hasmodifiedresidue_referencesequence_identifier" />
  743.     </Dataset>
  744. </Query>'
  745.                                                   },
  746.                               'default____pathway__naive_attributes__attributelist' => [
  747.                                                                                          'pathway__naive_attributes__attribute._displayname',
  748.                                                                                          'pathway__naive_attributes__attribute.referencepeptidesequence__dm_identifier',
  749.                                                                                          'pathway__naive_attributes__attribute.stableidentifier_identifier',
  750.                                                                                          'pathway__naive_attributes__attribute.referencepeptidesequence__dm__displayname',
  751.                                                                                          'pathway__naive_attributes__attribute.pathway_db_id'
  752.                                                                                        ],
  753.                               'default____entitywithaccessionedsequence__filterlist' => [],
  754.                               'dataBase' => 'REACTOME',
  755.                               'schema' => 'default',
  756.                               'export_outputformats' => [
  757.                                                           'html',
  758.                                                           'txt',
  759.                                                           'tsv',
  760.                                                           'xls'
  761.                                                         ],
  762.                               'ds_2_count' => undef,
  763.                               '__database' => undef,
  764.                               'summarypanel__current_highlighted_branch' => 'show_results',
  765.                               'mergeVS' => '0',
  766.                               'preView_outputformat' => 'html',
  767.                               '_SESSION_ETIME' => 86400,
  768.                               '_SESSION_ID' => 'c11fc50a8aaa07db26514ce8ca8723f5',
  769.                               'entitywithaccessionedsequence__attributepage' => 'naive_attributes',
  770.                               'default____pathway__filterlist' => [
  771.                                                                     'pathway__filter.species_selection',
  772.                                                                     'pathway__filter._displayname'
  773.                                                                   ],
  774.                               'pathway__filter.species_selection' => 'Homo sapiens',
  775.                               'entitywithaccessionedsequence__attributepages__current_visible_section' => 'entitywithaccessionedsequence__attributepanel__naive_attributes',
  776.                               '__Schema' => '- CHOOSE SCHEMA -',
  777.                               '_SESSION_ATIME' => 1317125174,
  778.                               '__enable_background' => 1,
  779.                               'exportView_outputformat' => 'tsv',
  780.                               'pathway__attributepages__current_visible_section' => 'pathway__attributepanel__naive_attributes',
  781.                               'pathway__attributepage' => 'naive_attributes',
  782.                               'ds_1_count' => undef,
  783.                               '__schema' => undef,
  784.                               '__Dataset' => '- CHOOSE DATASET -',
  785.                               'URL_REQUEST' => '1',
  786.                               'default____entitywithaccessionedsequence__naive_attributes__attributelist' => [
  787.                                                                                                                'entitywithaccessionedsequence__naive_attributes__attribute.mod_hasmodifiedresidue_psimod_identifier',
  788.                                                                                                                'entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue__displayname',
  789.                                                                                                                'entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue_coordinate',
  790.                                                                                                                'entitywithaccessionedsequence__naive_attributes__attribute.hasmodifiedresidue_referencesequence_identifier'
  791.                                                                                                              ],
  792.                               'datasetmenu_3' => 'pathway',
  793.                               'entitywithaccessionedsequence__filtercollections' => [],
  794.                               'mart_mainpanel__current_visible_section' => 'resultspanel',
  795.                               'resultsButton' => '1',
  796.                               'dataset' => [
  797.                                              'pathway',
  798.                                              'entitywithaccessionedsequence'
  799.                                            ],
  800.                               '_SESSION_REMOTE_ADDR' => '206.108.125.171',
  801.                               '_SESSION_CTIME' => 1317125168,
  802.                               'pathway__filter._displayname' => 'Degradation of beta-catenin by the destruction complex',
  803.                               '_SESSION_EXPIRE_LIST' => {},
  804.                               '__Database' => '- CHOOSE DATABASE -',
  805.                               'pathway__filtercollections' => [
  806.                                                                 'pathway__filtercollection.general',
  807.                                                                 'pathway__filtercollection.species_toggle'
  808.                                                               ]
  809.                             },
  810.                  '_QUERY' => bless( {
  811.                                       '.parameters' => [],
  812.                                       'use_tempfile' => 1,
  813.                                       '.r' => bless( do{\(my $o = 270193520)}, 'Apache2::RequestRec' ),
  814.                                       '.charset' => 'ISO-8859-1',
  815.                                       '.fieldnames' => {},
  816.                                       'param' => {},
  817.                                       'escape' => 1,
  818.                                       '.header_printed' => 1
  819.                                     }, 'CGI' ),
  820.                  '_DRIVER_ARGS' => {
  821.                                      'DataColName' => 'a_session',
  822.                                      'IdColName' => 'id',
  823.                                      'FileName' => '/path/local/BioMart0.7/biomart-perl/conf/sessions/cgisessions.db',
  824.                                      'TableName' => 'sessions'
  825.                                    },
  826.                  '_DSN' => {
  827.                              'serializer' => 'default',
  828.                              'id' => 'md5',
  829.                              'driver' => 'db_file'
  830.                            }
  831.                }, 'CGI::Session' );
  832. 2011/09/27 08:06:16 BioMart.Web:260:DEBUG> Processing template main.tt
  833. 2011/09/27 08:06:16 BioMart.Web:264:INFO> START PROCESSING TEMPLATE main.tt
  834. 2011/09/27 08:06:16 BioMart.Web:271:INFO> !!!! 0.21 to get process template main.tt and print to SCALAR
  835. [Tue Sep 27 08:06:18 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[results_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  836. [Tue Sep 27 08:06:18 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[new_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  837. [Tue Sep 27 08:06:21 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[count_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  838. [Tue Sep 27 08:06:22 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[xml_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  839. [Tue Sep 27 08:06:23 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[help_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  840. [Tue Sep 27 08:06:28 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[url_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  841. [Tue Sep 27 08:06:30 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[go_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
  842. [Tue Sep 27 08:06:31 2011] [error] [client 22.103.86.07] File does not exist: /path/local/BioMart0.7/biomart-perl/htdocs/biomart/[perl_button_image], referer: http://reactomedev.oicr.on.ca:5555/biomart/martview/c11fc50a8aaa07db26514ce8ca8723f5
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