# bin/lalign36 -E 10.0 -f -12 -g -2 ./wwwtmp/lalign19826.1.seq ./wwwtmp/lalign19826.2.seq -J -K 3
LALIGN finds non-overlapping local alignments
 version 36.3.5e Nov, 2012(preload8)
Please cite:
 X. Huang and W. Miller (1991) Adv. Appl. Math. 12:373-381

Query: ./wwwtmp/lalign19826.1.seq
  1>>>unknown 379 bp - 379 aa
Library: ./wwwtmp/lalign19826.2.seq
      379 residues in     1 sequences

Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1689;  K=0.02257
 statistics sampled from 1 (1) to 500 sequences
Threshold: E() < 10 score: 34
Algorithm: Smith-Waterman (SSE2, Michael Farrar 2006) (7.2 Nov 2010)
Parameters: BL50 matrix (15:-5), open/ext: -12/-2
 Scan time:  0.010

>>unknown 379 bp                                          (379 aa)
 Waterman-Eggert score: 2289;  563.2 bits; E(1) <  4.2e-165
85.7% identity (97.6% similar) in 378 aa overlap (1-378:1-378)

               10        20        30        40        50        60
unknow MATAGKVIECKAAVAWEAGKPLSIEEVEVAPPHAMEVRVKILYTALCHTDVYFWEAKGQT
       ::::::::.:::::::::::::..::::::::.:::::::::.:.::::::::::::::
unknow MATAGKVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQI
               10        20        30        40        50        60

               70        80        90       100       110       120
unknow PVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCKSEESNLCDLLRINV
       :.::::.::::::::::::::::...::::::::::::::.: :::: :::.:::::::.
unknow PMFPRIFGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINT
               70        80        90       100       110       120

              130       140       150       160       170       180
unknow DRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGIS
       :::::::::.:::.:.::::.:::::::::::::.::::.::::::::::::::::::::
unknow DRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGIS
              130       140       150       160       170       180

              190       200       210       220       230       240
unknow TGLGATLNVAKPKKGSTVAIFGLGAVGLAAMEGARMAGASRIIGVDLNPAKYEQAKKFGC
       :::::..::::: ::::::::::::::::: ::::.:::::::::::: ...:.:.::::
unknow TGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNAVRFEEARKFGC
              190       200       210       220       230       240

              250       260       270       280       290       300
unknow TDFVNPKDHTKPVQEVLVEMTNGGVDRAVECTGHIDAMIAAFECVHDGWGVAVLVGVPHK
       :.::::::::::::.::..::::::::.:::::...::: ::::::::::::::::::::
unknow TEFVNPKDHTKPVQQVLADMTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGVPHK
              250       260       270       280       290       300

              310       320       330       340       350       360
unknow EAVFKTYPMNFLNERTLKGTFFGNYKPRTDLPEVVEMYMRKELELEKFITHSVPFSQINT
       .: :::.:::::::::::::::::.:::::::.::::::.::::.:::::::::::.:::
unknow DAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINT
              310       320       330       340       350       360

              370
unknow AFDLMLKGEGLRCIMRMD
       ::::: ::::.:::.:::
unknow AFDLMAKGEGIRCIIRMD
              370

>--
 Waterman-Eggert score: 50;  17.7 bits; E(1) <  0.5
39.4% identity (63.6% similar) in 33 aa overlap (65-94:221-253)

           70          80         90
unknow RILGHEAGGIV--ESVGEGVTELV-PGDHVLPV
       ::.: . ...   :.   : ::.: : ::. ::
unknow RIIGVDLNAVRFEEARKFGCTEFVNPKDHTKPV
              230       240       250

>--
 Waterman-Eggert score: 48;  17.2 bits; E(1) <  0.62
60.0% identity (66.7% similar) in 15 aa overlap (239-253:81-94)

      240       250
unknow GCTDFVNPKDHTKPV
       : :: : : ::. ::
unknow GVTD-VAPGDHVLPV
                90



379 residues in 1 query   sequences
379 residues in 1 library sequences
 Scomplib [36.3.5e Nov, 2012(preload8)]
 start: Tue Apr 28 08:46:03 2015 done: Tue Apr 28 08:46:03 2015
 Total Scan time:  0.010 Total Display time:  0.010

Function used was LALIGN [36.3.5e Nov, 2012(preload8)]