emomsen@gisdev:~/temp/rspatial/pkg$ grass70
Cleaning up temporary files...
Starting GRASS GIS...


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Welcome to GRASS 7.0.svn
GRASS homepage:                          http://grass.osgeo.org
This version running through:            Bash Shell (/bin/bash)
Help is available with the command:      g.manual -i
See the licence terms with:              g.version -c
If required, restart the GUI with:       g.gui wxpython
When ready to quit enter:                exit

Launching <wxpython> GUI in the background, please wait...
GRASS 7.0.svn (spearfish70):~/temp/rspatial/pkg > R CMD check spgrass6
* using log directory ‘/home/emomsen/temp/rspatial/pkg/spgrass6.Rcheck’
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘spgrass6/DESCRIPTION’ ... OK
* this is package ‘spgrass6’ version ‘0.7-9’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking whether package ‘spgrass6’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in ‘spgrass6-Ex.R’ failed
The error most likely occurred in:

> ### Name: readRAST6
> ### Title: Read and write GRASS 6+ raster files
> ### Aliases: readRAST6 writeRAST6
> ### Keywords: spatial
>
> ### ** Examples
>
> if (nchar(Sys.getenv("GISRC")) > 0) {
+   require(rgdal)
+   ois <- get.ignore.stderrOption()
+   set.ignore.stderrOption(TRUE)
+   get.useGDALOption()
+   spear <- readRAST6(c("geology", "elevation.dem"), cat=c(TRUE, FALSE),
+     useGDAL=FALSE)
+   spear <- readRAST6(c("geology", "elevation.dem"), cat=c(TRUE, FALSE),
+     useGDAL=TRUE)
+   print(table(spear$geology))
+   execGRASS("r.stats", flags=c("c", "l", "quiet"), input="geology")
+   boxplot(spear$elevation.dem ~ spear$geology)
+   spear$sqdem <- sqrt(spear$elevation.dem)
+   if ("GRASS" %in% gdalDrivers()$name) {
+     execGRASS("g.region", rast="elevation.dem")
+     dem1 <- readRAST6("elevation.dem", plugin=TRUE, mapset="PERMANENT")
+     print(summary(dem1))
+     execGRASS("g.region", rast="elevation.dem")
+   }
+   writeRAST6(spear, "sqdemSP", zcol="sqdem")
+   execGRASS("r.info", map="sqdemSP")
+   execGRASS("g.remove", rast="sqdemSP")
+   writeRAST6(spear, "sqdemSP", zcol="sqdem", useGDAL=TRUE)
+   execGRASS("r.info", map="sqdemSP")
+   print(system.time(sqdemSP <- readRAST6(c("sqdemSP", "elevation.dem"),
+     useGDAL=TRUE, return_SGDF=FALSE)))
+   print(system.time(sqdemSP <- readRAST6(c("sqdemSP", "elevation.dem"),
+     useGDAL=TRUE, return_SGDF=TRUE)))
+   print(system.time(sqdemSP <- readRAST6(c("sqdemSP", "elevation.dem"),
+     useGDAL=FALSE, return_SGDF=TRUE)))
+   print(system.time(sqdemSP <- readRAST6(c("sqdemSP", "elevation.dem"),
+     useGDAL=FALSE, return_SGDF=FALSE)))
+   str(sqdemSP)
+   mat <- do.call("cbind", sqdemSP$dataList)
+   str(mat)
+   print(system.time(SGDF <- SpatialGridDataFrame(grid=sqdemSP$grid,
+     proj4string=sqdemSP$proj4string, data=as.data.frame(sqdemSP$dataList))))
+   summary(SGDF)
+   execGRASS("g.remove", rast="sqdemSP")
+   if (execGRASS("g.version", intern=TRUE) > "GRASS 7") {
+     execGRASS("r.mapcalc", expression="quads0 = quads - 1")
+   } else {
+     execGRASS("r.mapcalculator", outfile="quads0",
+       amap="quads", formula='A - 1')
+   }
+   execGRASS("r.stats", flags="c", input="quads0")
+   quads0 <- readRAST6("quads0")
+   print(table(quads0$quads0))
+   quads0 <- readRAST6("quads0", plugin=FALSE)
+   print(table(quads0$quads0))
+   execGRASS("g.remove", rast="quads0")
+   set.ignore.stderrOption(ois)
+ }
Loading required package: rgdal
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
Path to GDAL shared files: /usr/share/gdal/1.7
Loaded PROJ.4 runtime: Rel. 4.7.1, 23 September 2009, [PJ_VERSION: 470]
Path to PROJ.4 shared files: (autodetected)

metamorphic  transition     igneous   sandstone   limestone       shale
     103920        1220      327292      674570      552230      416870
sandy shale    claysand        sand
     101900      130640      329370
1 metamorphic 103920
2 transition 1220
3 igneous 327292
4 sandstone 674570
5 limestone 552230
6 shale 416870
7 sandy shale 101900
8 claysand 130640
9 sand 329370
* no data 16790
GRASS 7.0.svn (spearfish70):~/temp/rspatial/pkg >