public void printMatrix()
        {
            char[] alineSeqArray = alineSeq.ToCharArray();
            char[] refSeqArray = refSeq.ToCharArray();
            //Display the matrix
            for (int i = 0; i < alineSeqCnt; i++)
            {
                if (i == 0)
                {
                    for (int sekwPion = 0; sekwPion < refSeqArray.Length; sekwPion++)
                    {
                        if (sekwPion == 0)
                        {
                            Console.Write("     ");
                        }
                        Console.Write(refSeqArray[sekwPion]+" ");
                        if(sekwPion == refSeqArray.Length -1)
                            Console.WriteLine();
                    }
                }
                for (int j = 0; j < refSeqCnt; j++)
                {
                    if(j == 0 && i <= alineSeqArray.Length)
                    {
                        if (i == 0)
                        {
                            Console.Write("  ");
                        }
                        else
                        {
                            Console.Write(alineSeqArray[i-1] + " ");
                        }

                    }
                    if (scoringMatrix[i, j] >= 0)
                        Console.Write(" ");
                    Console.Write(scoringMatrix[i, j]);
                }
                Console.Write(Environment.NewLine);
            }
        }
    }