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robsyme

nextflow.log

Nov 18th, 2015
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  1. Nov-18 23:33:15.397 [main] DEBUG nextflow.cli.Launcher - $> /home/rsyme/bin/nextflow run .
  2. Nov-18 23:33:15.542 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.16.2
  3. Nov-18 23:33:15.798 [main] DEBUG nextflow.scm.AssetManager - Cannot read project manifest -- Cause: ./nextflow.config (No such file or directory)
  4. Nov-18 23:33:15.806 [main] INFO nextflow.cli.CmdRun - Launching ./main.nf
  5. Nov-18 23:33:15.822 [main] DEBUG nextflow.config.ConfigBuilder - Found config home: /home/rsyme/.nextflow/config
  6. Nov-18 23:33:15.824 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/rsyme/.nextflow/config
  7. Nov-18 23:33:16.162 [main] DEBUG nextflow.config.ConfigBuilder - Setting config profile: 'standard'
  8. Nov-18 23:33:16.238 [main] DEBUG nextflow.Session - Session uuid: f9059a0c-5fd1-4cde-b8be-72d432d8ffcc
  9. Nov-18 23:33:16.241 [main] DEBUG nextflow.Session - Executor pool size: 31
  10. Nov-18 23:33:16.247 [main] ERROR nextflow.cli.Launcher - @unknown
  11. java.nio.file.NoSuchFileException: /home/rsyme/bin/main.nf
  12. at sun.nio.fs.UnixException.translateToIOException(UnixException.java:98) ~[na:1.7.0]
  13. at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:114) ~[na:1.7.0]
  14. at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:119) ~[na:1.7.0]
  15. at sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:226) ~[na:1.7.0]
  16. at java.nio.file.Files.newByteChannel(Files.java:326) ~[na:1.7.0]
  17. at java.nio.file.Files.newByteChannel(Files.java:372) ~[na:1.7.0]
  18. at java.nio.file.spi.FileSystemProvider.newInputStream(FileSystemProvider.java:391) ~[na:1.7.0]
  19. at java.nio.file.Files.newInputStream(Files.java:117) ~[na:1.7.0]
  20. at java.nio.file.Files.newBufferedReader(Files.java:2686) ~[na:1.7.0]
  21. at org.codehaus.groovy.runtime.NioGroovyMethods.newReader(NioGroovyMethods.java:1306) ~[groovy-nio-2.4.5.jar:2.4.5]
  22. at org.codehaus.groovy.runtime.NioGroovyMethods.getText(NioGroovyMethods.java:422) ~[groovy-nio-2.4.5.jar:2.4.5]
  23. at nextflow.script.ScriptFile.getText(ScriptFile.groovy:66) ~[nextflow-0.16.2.jar:na]
  24. at nextflow.script.ScriptRunner.setScript(ScriptRunner.groovy:109) ~[nextflow-0.16.2.jar:na]
  25. at nextflow.cli.CmdRun.run(CmdRun.groovy:174) ~[nextflow-0.16.2.jar:na]
  26. at nextflow.cli.Launcher.run(Launcher.groovy:380) [nextflow-0.16.2.jar:na]
  27. at nextflow.cli.Launcher.main(Launcher.groovy:529) [nextflow-0.16.2.jar:na]
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