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- Using configuration: sim
- Building sim
- Cactus - version: 4.2.3
- Building configuration sim
- Checking status of thorn CoordBase
- Checking status of thorn Boundary
- Checking status of thorn ADMCoupling
- Checking status of thorn ADMMacros
- Checking status of thorn ADMMass
- Checking status of thorn AEILocalInterp
- Checking status of thorn zlib
- Checking status of thorn BLAS
- Checking status of thorn Fortran
- Checking status of thorn CycleClock
- Checking status of thorn Vectors
- Checking status of thorn IOUtil
- Checking status of thorn CarpetProlongateTest
- Checking status of thorn CarpetRegridTest
- Checking status of thorn CarpetTracker
- Checking status of thorn Constants
- Checking status of thorn CoordGauge
- Checking status of thorn DemoInterp
- Checking status of thorn SphericalSurface
- Checking status of thorn DistortedBHIVP
- Checking status of thorn EOS_Base
- Checking status of thorn EOS_IdealFluid
- Checking status of thorn EinsteinExact_Test
- Checking status of thorn EllBase
- Checking status of thorn Exact
- Checking status of thorn Extract
- Checking status of thorn FFTW3
- Checking status of thorn FleshInfo
- Checking status of thorn GSL
- Checking status of thorn GenericFD
- Checking status of thorn Socket
- Checking status of thorn HelloWorld
- Checking status of thorn HighOrderWaveTest
- Checking status of thorn HydroBase
- Checking status of thorn Hydro_InitExcision
- Checking status of thorn IDAnalyticBH
- Checking status of thorn IDAxiBrillBH
- Checking status of thorn IDAxiOddBrillBH
- Checking status of thorn IDConstraintViolate
- Checking status of thorn IDFileADM
- Checking status of thorn IDLinearWaves
- Checking status of thorn IDScalarWave
- Checking status of thorn IDScalarWaveC
- Checking status of thorn IDScalarWaveCXX
- Checking status of thorn IDScalarWaveElliptic
- Checking status of thorn IDWaveMoL
- Checking status of thorn IOASCII
- Checking status of thorn IOBasic
- Checking status of thorn libjpeg
- Checking status of thorn InitBase
- Checking status of thorn InterpToArray
- Checking status of thorn LAPACK
- Checking status of thorn LocalInterp
- Checking status of thorn LocalInterp2
- Checking status of thorn LocalReduce
- Checking status of thorn ML_BSSN_Test
- Checking status of thorn ML_CCZ4_Test
- Checking status of thorn ML_WaveToy_Test
- Checking status of thorn MoL
- Checking status of thorn NaNCatcher
- Checking status of thorn NaNChecker
- Checking status of thorn NewRad
- Checking status of thorn Nice
- Checking status of thorn Noise
- Checking status of thorn Norms
- Checking status of thorn NullDecomp
- Checking status of thorn NullGrid
- Checking status of thorn NullVars
- Checking status of thorn OpenSSL
- Checking status of thorn Outflow
- Checking status of thorn PAPI
- Checking status of thorn TATelliptic
- Checking status of thorn PunctureTracker
- Checking status of thorn TGRtensor
- Checking status of thorn ReductionTest
- Checking status of thorn ReductionTest2
- Checking status of thorn ReductionTest3
- Checking status of thorn ReflectionSymmetry
- Checking status of thorn RegridSyncTest
- Checking status of thorn RotatingDBHIVP
- Checking status of thorn SampleBoundary
- Checking status of thorn SampleIO
- Checking status of thorn SetMask_SphericalSurface
- Checking status of thorn SlabTest
- Checking status of thorn StaticConformal
- Checking status of thorn SummationByParts
- Checking status of thorn SymBase
- Checking status of thorn SystemStatistics
- Checking status of thorn TerminationTrigger
- Checking status of thorn TestArrays
- Checking status of thorn TestComplex
- Checking status of thorn TestCoordinates
- Checking status of thorn TestFortranCrayPointers
- Checking status of thorn TestFortranDependencies2
- Checking status of thorn TestFpointerNULL
- Checking status of thorn TestFreeF90
- Checking status of thorn TestGlobalReduce
- Checking status of thorn TestInclude1
- Checking status of thorn TestInclude2
- Checking status of thorn TestLocalInterp2
- Checking status of thorn TestLocalReduce
- Checking status of thorn TestLoop
- Checking status of thorn TestMath
- Checking status of thorn TestMoL
- Checking status of thorn TestPar
- Checking status of thorn TestReduce
- Checking status of thorn TestSchedule
- Checking status of thorn TestStrings
- Checking status of thorn TestTable
- Checking status of thorn TestTimers
- Checking status of thorn TestTypes
- Checking status of thorn Time
- Checking status of thorn TimerInfo
- Checking status of thorn TmunuBase
- Checking status of thorn Trigger
- Checking status of thorn TwoPunctures
- Checking status of thorn WaveBinarySource
- Checking status of thorn WaveToy1DF77
- Checking status of thorn WaveToy2DF77
- Checking status of thorn WaveToyExtra
- Checking status of thorn CactusBindings
- Checking status of thorn CartGrid3D
- Checking status of thorn hwloc
- Checking status of thorn SpaceMask
- Checking status of thorn CalcK
- Checking status of thorn LoopControl
- Checking status of thorn Cartoon2D
- Checking status of thorn Dissipation
- Checking status of thorn EHFinder
- Checking status of thorn EOS_Polytrope
- Checking status of thorn EllSOR
- Checking status of thorn GaugeWave
- Checking status of thorn Hydro_Analysis
- Checking status of thorn IDBrillData
- Checking status of thorn IOJpeg
- Checking status of thorn KerrSchild
- Checking status of thorn LORENE
- Checking status of thorn ML_ADMConstraints
- Checking status of thorn ML_ADMQuantities
- Checking status of thorn ML_BSSN
- Checking status of thorn ML_BSSN_Helper
- Checking status of thorn ML_CCZ4
- Checking status of thorn ML_CCZ4_Helper
- Checking status of thorn ML_WaveToy
- Checking status of thorn Meudon_Bin_BH
- Checking status of thorn Meudon_Bin_NS
- Checking status of thorn Meudon_Mag_NS
- Checking status of thorn Minkowski
- Checking status of thorn ModifiedSchwarzschildBL
- Checking status of thorn NullInterp
- Checking status of thorn Poisson
- Checking status of thorn ShiftedGaugeWave
- Checking status of thorn TOVSolver
- Checking status of thorn TestFortranDependencies1
- Checking status of thorn TestLoopControl
- Checking status of thorn Vaidya2
- Checking status of thorn WaveMoL
- Checking status of thorn WaveToyC
- Checking status of thorn WaveToyCXX
- Checking status of thorn WaveToyF77
- Checking status of thorn WaveToyF90
- Checking status of thorn WaveToyFreeF90
- Checking status of thorn WeylScal4
- Checking status of thorn ADMAnalysis
- Checking status of thorn ADMBase
- Checking status of thorn AHFinder
- Checking status of thorn MPI
- Checking status of thorn CarpetMask
- Checking status of thorn EOS_Hybrid
- Checking status of thorn Formaline
- Checking status of thorn HTTPD
- Checking status of thorn PUGH
- Checking status of thorn MemSpeed
- Checking status of thorn NoMPI
- Checking status of thorn NullEvolve
- Checking status of thorn NullNews
- Checking status of thorn PUGHInterp
- Checking status of thorn PUGHReduce
- Checking status of thorn PUGHSlab
- Checking status of thorn Slab
- Checking status of thorn QuasiLocalMeasures
- Checking status of thorn SystemTopology
- Checking status of thorn TimerReport
- Checking status of thorn Cactus
- Checking status of thorn HDF5
- Checking status of thorn CarpetLib
- Checking status of thorn EOS_Omni
- Checking status of thorn HTTPDExtra
- Checking status of thorn IOHDF5Util
- Checking status of thorn Multipole
- Checking status of thorn NullConstr
- Checking status of thorn NullExact
- Checking status of thorn NullPsiInt
- Checking status of thorn NullSHRExtract
- Checking status of thorn Periodic
- Checking status of thorn RotatingSymmetry180
- Checking status of thorn RotatingSymmetry90
- Checking status of thorn SphericalHarmonicDecomp
- Checking status of thorn SphericalHarmonicRecon
- Checking status of thorn AHFinderDirect
- Checking status of thorn Timers
- Checking status of thorn GRHydro_InitData
- Checking status of thorn IOHDF5
- Checking status of thorn Carpet
- Checking status of thorn CarpetEvolutionMask
- Checking status of thorn CarpetIOASCII
- Checking status of thorn CarpetIOBasic
- Checking status of thorn CarpetIOHDF5
- Checking status of thorn CarpetIOScalar
- Checking status of thorn CarpetIntegrateTest
- Checking status of thorn CarpetInterp
- Checking status of thorn CarpetInterp2
- Checking status of thorn CarpetReduce
- Checking status of thorn CarpetRegrid
- Checking status of thorn CarpetRegrid2
- Checking status of thorn CarpetSlab
- Checking status of thorn GRHydro
- Checking status of thorn NoExcision
- Checking status of thorn PeriodicCarpet
- Checking status of thorn TestCarpetGridInfo
- Formaline: Committing source tree to git repository...
- Formaline: Created git tag build-sim-comermacproretina.attlocal.net-comerduncan-2015.05.20-16.28.01-71392
- Formaline: Updated git branch config-sim-comermacproretina.attlocal.net-Users-comerduncan-Cactus
- Formaline: Pushing source tree to master git repository...
- Formaline: Pushing to local repository /Users/comerduncan/Cactus/../CactusSourceJar.git...
- Formaline: Done.
- Formaline: (Formaline has finished updating the git repositories.
- Formaline: If the build process seems to hang, some other command
- Formaline: is still running, e.g. the final link stage.)
- ________________________________________________________________________
- Creating cactus_sim in /Users/comerduncan/Cactus/exe from EinsteinAnalysis/ADMAnalysis EinsteinBase/ADMBase EinsteinBase/ADMCoupling EinsteinBase/ADMMacros AEIThorns/ADMMass AEIThorns/AEILocalInterp EinsteinAnalysis/AHFinder EinsteinAnalysis/AHFinderDirect ExternalLibraries/BLAS CactusBase/Boundary EinsteinAnalysis/CalcK Carpet/Carpet Carpet/CarpetEvolutionMask Carpet/CarpetIOASCII Carpet/CarpetIOBasic Carpet/CarpetIOHDF5 Carpet/CarpetIOScalar Carpet/CarpetIntegrateTest Carpet/CarpetInterp Carpet/CarpetInterp2 Carpet/CarpetLib Carpet/CarpetMask Carpet/CarpetProlongateTest Carpet/CarpetReduce Carpet/CarpetRegrid Carpet/CarpetRegrid2 Carpet/CarpetRegridTest Carpet/CarpetSlab Carpet/CarpetTracker CactusBase/CartGrid3D CactusNumerical/Cartoon2D EinsteinBase/Constants CactusBase/CoordBase EinsteinBase/CoordGauge Carpet/CycleClock CactusExamples/DemoInterp CactusNumerical/Dissipation EinsteinInitialData/DistortedBHIVP EinsteinAnalysis/EHFinder EinsteinBase/EOS_Base EinsteinEOS/EOS_Hybrid EinsteinEOS/EOS_IdealFluid EinsteinEOS/EOS_Omni EinsteinEOS/EOS_Polytrope EinsteinExact/EinsteinExact_Test CactusElliptic/EllBase CactusElliptic/EllSOR EinsteinInitialData/Exact EinsteinAnalysis/Extract ExternalLibraries/FFTW3 CactusExamples/FleshInfo CactusUtils/Formaline CactusBase/Fortran EinsteinEvolve/GRHydro EinsteinEvolve/GRHydro_InitData ExternalLibraries/GSL EinsteinExact/GaugeWave KrancNumericalTools/GenericFD ExternalLibraries/HDF5 CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusExamples/HelloWorld Carpet/HighOrderWaveTest EinsteinBase/HydroBase EinsteinAnalysis/Hydro_Analysis EinsteinInitialData/Hydro_InitExcision EinsteinInitialData/IDAnalyticBH EinsteinInitialData/IDAxiBrillBH EinsteinInitialData/IDAxiOddBrillBH EinsteinInitialData/IDBrillData EinsteinInitialData/IDConstraintViolate EinsteinInitialData/IDFileADM EinsteinInitialData/IDLinearWaves CactusWave/IDScalarWave CactusWave/IDScalarWaveC CactusWave/IDScalarWaveCXX CactusWave/IDScalarWaveElliptic CactusExamples/IDWaveMoL CactusBase/IOASCII CactusBase/IOBasic CactusPUGHIO/IOHDF5 CactusPUGHIO/IOHDF5Util CactusIO/IOJpeg CactusBase/IOUtil CactusBase/InitBase CactusNumerical/InterpToArray EinsteinExact/KerrSchild ExternalLibraries/LAPACK ExternalLibraries/LORENE CactusNumerical/LocalInterp CactusNumerical/LocalInterp2 CactusNumerical/LocalReduce Carpet/LoopControl McLachlan/ML_ADMConstraints McLachlan/ML_ADMQuantities McLachlan/ML_BSSN McLachlan/ML_BSSN_Helper McLachlan/ML_BSSN_Test McLachlan/ML_CCZ4 McLachlan/ML_CCZ4_Helper McLachlan/ML_CCZ4_Test McLachlan/ML_WaveToy McLachlan/ML_WaveToy_Test ExternalLibraries/MPI CactusUtils/MemSpeed EinsteinInitialData/Meudon_Bin_BH EinsteinInitialData/Meudon_Bin_NS EinsteinInitialData/Meudon_Mag_NS EinsteinExact/Minkowski CactusNumerical/MoL EinsteinExact/ModifiedSchwarzschildBL EinsteinAnalysis/Multipole CactusUtils/NaNCatcher CactusUtils/NaNChecker EinsteinEvolve/NewRad CactusUtils/Nice EinsteinInitialData/NoExcision CactusUtils/NoMPI CactusNumerical/Noise CactusNumerical/Norms PITTNullCode/NullConstr PITTNullCode/NullDecomp PITTNullCode/NullEvolve PITTNullCode/NullExact PITTNullCode/NullGrid PITTNullCode/NullInterp PITTNullCode/NullNews PITTNullCode/NullPsiInt PITTNullCode/NullSHRExtract PITTNullCode/NullVars ExternalLibraries/OpenSSL EinsteinAnalysis/Outflow ExternalLibraries/PAPI CactusPUGH/PUGH CactusPUGH/PUGHInterp CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab CactusNumerical/Periodic LSUThorns/PeriodicCarpet CactusExamples/Poisson AEIThorns/PunctureTracker LSUThorns/QuasiLocalMeasures Carpet/ReductionTest Carpet/ReductionTest2 Carpet/ReductionTest3 CactusNumerical/ReflectionSymmetry Carpet/RegridSyncTest EinsteinInitialData/RotatingDBHIVP CactusNumerical/RotatingSymmetry180 CactusNumerical/RotatingSymmetry90 CactusExamples/SampleBoundary CactusExamples/SampleIO EinsteinUtils/SetMask_SphericalSurface EinsteinExact/ShiftedGaugeWave CactusNumerical/Slab CactusNumerical/SlabTest CactusConnect/Socket CactusNumerical/SpaceMask PITTNullCode/SphericalHarmonicDecomp PITTNullCode/SphericalHarmonicRecon CactusNumerical/SphericalSurface EinsteinBase/StaticConformal LSUThorns/SummationByParts CactusBase/SymBase AEIThorns/SystemStatistics CactusUtils/SystemTopology CactusElliptic/TATelliptic EinsteinUtils/TGRtensor EinsteinInitialData/TOVSolver CactusUtils/TerminationTrigger CactusTest/TestArrays Carpet/TestCarpetGridInfo CactusTest/TestComplex CactusTest/TestCoordinates CactusTest/TestFortranCrayPointers CactusTest/TestFortranDependencies1 CactusTest/TestFortranDependencies2 CactusTest/TestFpointerNULL CactusTest/TestFreeF90 CactusTest/TestGlobalReduce CactusTest/TestInclude1 CactusTest/TestInclude2 CactusNumerical/TestLocalInterp2 CactusNumerical/TestLocalReduce CactusTest/TestLoop Carpet/TestLoopControl CactusTest/TestMath CactusTest/TestMoL CactusTest/TestPar CactusTest/TestReduce CactusTest/TestSchedule CactusTest/TestStrings CactusTest/TestTable CactusTest/TestTimers CactusTest/TestTypes CactusBase/Time CactusExamples/TimerInfo CactusUtils/TimerReport Carpet/Timers EinsteinBase/TmunuBase AEIThorns/Trigger EinsteinInitialData/TwoPunctures EinsteinExact/Vaidya2 LSUThorns/Vectors CactusWave/WaveBinarySource CactusExamples/WaveMoL CactusExamples/WaveToy1DF77 CactusExamples/WaveToy2DF77 CactusWave/WaveToyC CactusWave/WaveToyCXX CactusWave/WaveToyExtra CactusWave/WaveToyF77 CactusWave/WaveToyF90 CactusWave/WaveToyFreeF90 EinsteinAnalysis/WeylScal4 ExternalLibraries/hwloc ExternalLibraries/libjpeg ExternalLibraries/zlib
- Undefined symbols for architecture x86_64:
- "MPI::Win::Free()", referenced from:
- vtable for MPI::Win in libthorn_PeriodicCarpet.a(periodic.cc.o)
- vtable for MPI::Win in libthorn_Carpet.a(helpers.cc.o)
- vtable for MPI::Win in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
- vtable for MPI::Win in libthorn_CarpetIOASCII.a(ioascii.cc.o)
- vtable for MPI::Win in libthorn_CarpetIOBasic.a(iobasic.cc.o)
- vtable for MPI::Win in libthorn_CarpetIOHDF5.a(Input.cc.o)
- vtable for MPI::Win in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
- ...
- "MPI::Comm::Comm()", referenced from:
- MPI::Intercomm::Merge(bool) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Intracomm::Split(int, int) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Intracomm::Create(MPI::Group const&) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Graphcomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Cartcomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Intracomm::Clone() const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Intracomm::Create_graph(int, int const*, int const*, bool) const in libthorn_PeriodicCarpet.a(periodic.cc.o)
- ...
- "MPI::Datatype::Free()", referenced from:
- vtable for MPI::Datatype in libthorn_PeriodicCarpet.a(periodic.cc.o)
- vtable for MPI::Datatype in libthorn_Carpet.a(helpers.cc.o)
- vtable for MPI::Datatype in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
- vtable for MPI::Datatype in libthorn_CarpetIOASCII.a(ioascii.cc.o)
- vtable for MPI::Datatype in libthorn_CarpetIOBasic.a(iobasic.cc.o)
- vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(Input.cc.o)
- vtable for MPI::Datatype in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
- ...
- "_ompi_mpi_cxx_op_intercept", referenced from:
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_PeriodicCarpet.a(periodic.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_Carpet.a(helpers.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetEvolutionMask.a(evolution_mask.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOASCII.a(ioascii.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOBasic.a(iobasic.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOHDF5.a(Input.cc.o)
- MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool) in libthorn_CarpetIOHDF5.a(CarpetIOHDF5.cc.o)
- ...
- ld: symbol(s) not found for architecture x86_64
- collect2: error: ld returned 1 exit status
- make[1]: *** [/Users/comerduncan/Cactus/exe/cactus_sim] Error 1
- make: *** [sim] Error 2
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