Advertisement
Not a member of Pastebin yet?
Sign Up,
it unlocks many cool features!
- Makefile:91: .depend: No such file or directory
- wget https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.14/src/hdf5-1.8.14.tar.gz --no-check-certificate
- --2016-10-25 12:34:20-- https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.14/src/hdf5-1.8.14.tar.gz
- Resolving www.hdfgroup.org... 161.47.20.161, 2001:4801:7905:100:aff8:a2d8::1019
- Connecting to www.hdfgroup.org|161.47.20.161|:443... connected.
- WARNING: cannot verify www.hdfgroup.org's certificate, issued by ‘/C=US/O=DigiCert Inc/CN=DigiCert SHA2 Secure Server CA’:
- Unable to locally verify the issuer's authority.
- HTTP request sent, awaiting response... 302 Found
- Location: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.14/src/hdf5-1.8.14.tar.gz [following]
- --2016-10-25 12:34:21-- https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.14/src/hdf5-1.8.14.tar.gz
- Resolving support.hdfgroup.org... 50.28.50.143
- Connecting to support.hdfgroup.org|50.28.50.143|:443... connected.
- WARNING: cannot verify support.hdfgroup.org's certificate, issued by ‘/C=US/O=DigiCert Inc/CN=DigiCert SHA2 Secure Server CA’:
- Unable to locally verify the issuer's authority.
- HTTP request sent, awaiting response... 200 OK
- Length: 11761702 (11M) [application/x-gzip]
- Saving to: ‘hdf5-1.8.14.tar.gz’
- 100%[==================================================================================================================================================================>] 11,761,702 598KB/s in 20s
- 2016-10-25 12:34:41 (576 KB/s) - ‘hdf5-1.8.14.tar.gz’ saved [11761702/11761702]
- tar -xzf hdf5-1.8.14.tar.gz
- cd hdf5-1.8.14; ./configure --enable-threadsafe --prefix=`pwd`/..; make; make install
- checking for a BSD-compatible install... /usr/bin/install -c
- checking whether build environment is sane... yes
- checking for a thread-safe mkdir -p... bin/install-sh -c -d
- checking for gawk... no
- checking for mawk... no
- checking for nawk... no
- checking for awk... awk
- checking whether make sets $(MAKE)... yes
- checking whether make supports nested variables... yes
- checking whether make supports nested variables... (cached) yes
- checking whether to enable maintainer-specific portions of Makefiles... no
- checking build system type... i386-apple-darwin13.4.0
- checking host system type... i386-apple-darwin13.4.0
- checking shell variables initial values... done
- checking if basename works... yes
- checking if xargs works... yes
- checking for cached host... none
- checking for config i386-apple-darwin13.4.0... no
- checking for config i386-apple-darwin13.4.0... no
- checking for config apple-darwin13.4.0... no
- checking for config apple-darwin13.4.0... no
- checking for config i386-darwin13.4.0... no
- checking for config i386-darwin13.4.0... no
- checking for config i386-apple... no
- checking for config darwin13.4.0... no
- checking for config darwin13.4.0... no
- checking for config apple... found
- checking for config ./config/site-specific/host-la-mckiernan... no
- checking for gcc... clang
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether we are using the GNU C compiler... yes
- checking whether clang accepts -g... yes
- checking for clang option to accept ISO C89... none needed
- checking whether clang understands -c and -o together... yes
- checking for style of include used by make... GNU
- checking dependency style of clang... gcc3
- checking if unsupported combinations of configure options are allowed... no
- checking if Fortran interface enabled... no
- checking if Fortran 2003 interface enabled... yes
- checking whether we are using the GNU C++ compiler... yes
- checking whether clang++ accepts -g... yes
- checking dependency style of clang++... gcc3
- checking how to run the C++ preprocessor... clang++ -E
- checking if c++ interface enabled... no
- checking for perl... perl
- checking for ar... ar
- checking whether make sets $(MAKE)... (cached) yes
- checking for tr... /usr/bin/tr
- checking if srcdir= and time commands work together... yes
- checking how to print strings... printf
- checking for a sed that does not truncate output... /usr/bin/sed
- checking for grep that handles long lines and -e... /sw/bin/grep
- checking for egrep... /sw/bin/grep -E
- checking for fgrep... /sw/bin/grep -F
- checking for ld used by clang... /Library/Developer/CommandLineTools/usr/bin/ld
- checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no
- checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
- checking the name lister (/usr/bin/nm) interface... BSD nm
- checking whether ln -s works... yes
- checking the maximum length of command line arguments... 196608
- checking whether the shell understands some XSI constructs... yes
- checking whether the shell understands "+="... yes
- checking how to convert i386-apple-darwin13.4.0 file names to i386-apple-darwin13.4.0 format... func_convert_file_noop
- checking how to convert i386-apple-darwin13.4.0 file names to toolchain format... func_convert_file_noop
- checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r
- checking for objdump... objdump
- checking how to recognize dependent libraries... pass_all
- checking for dlltool... dlltool
- checking how to associate runtime and link libraries... printf %s\n
- checking for archiver @FILE support... no
- checking for strip... strip
- checking for ranlib... ranlib
- checking command to parse /usr/bin/nm output from clang object... ok
- checking for sysroot... no
- checking for mt... no
- checking if : is a manifest tool... no
- checking for dsymutil... dsymutil
- checking for nmedit... nmedit
- checking for lipo... lipo
- checking for otool... otool
- checking for otool64... no
- checking for -single_module linker flag... yes
- checking for -exported_symbols_list linker flag... yes
- checking for -force_load linker flag... yes
- checking how to run the C preprocessor... clang -E
- checking for ANSI C header files... yes
- checking for sys/types.h... yes
- checking for sys/stat.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for memory.h... yes
- checking for strings.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for unistd.h... yes
- checking for dlfcn.h... yes
- checking for objdir... .libs
- checking if clang supports -fno-rtti -fno-exceptions... yes
- checking for clang option to produce PIC... -fno-common -DPIC
- checking if clang PIC flag -fno-common -DPIC works... yes
- checking if clang static flag -static works... no
- checking if clang supports -c -o file.o... yes
- checking if clang supports -c -o file.o... (cached) yes
- checking whether the clang linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes
- checking dynamic linker characteristics... darwin13.4.0 dyld
- checking how to hardcode library paths into programs... immediate
- checking for dlopen in -ldl... yes
- checking whether a program can dlopen itself... yes
- checking whether a statically linked program can dlopen itself... yes
- checking whether stripping libraries is possible... yes
- checking if libtool supports shared libraries... yes
- checking whether to build shared libraries... yes
- checking whether to build static libraries... yes
- checking if we should install only statically linked executables... no
- checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes
- checking how make searches directories... VPATH=DIR1 DIR2 ...
- checking whether make will build with undefined variables... yes
- checking for production mode... production
- checking for ceil in -lm... yes
- checking for dlopen in -ldl... (cached) yes
- checking for ANSI C header files... (cached) yes
- checking whether time.h and sys/time.h may both be included... yes
- checking for difftime... yes
- checking for gettimeofday... yes
- checking for library containing clock_gettime... no
- checking for clock_gettime... no
- checking sys/resource.h usability... yes
- checking sys/resource.h presence... yes
- checking for sys/resource.h... yes
- checking sys/time.h usability... yes
- checking sys/time.h presence... yes
- checking for sys/time.h... yes
- checking for unistd.h... (cached) yes
- checking sys/ioctl.h usability... yes
- checking sys/ioctl.h presence... yes
- checking for sys/ioctl.h... yes
- checking for sys/stat.h... (cached) yes
- checking sys/socket.h usability... yes
- checking sys/socket.h presence... yes
- checking for sys/socket.h... yes
- checking for sys/types.h... (cached) yes
- checking stddef.h usability... yes
- checking stddef.h presence... yes
- checking for stddef.h... yes
- checking setjmp.h usability... yes
- checking setjmp.h presence... yes
- checking for setjmp.h... yes
- checking features.h usability... no
- checking features.h presence... no
- checking for features.h... no
- checking dirent.h usability... yes
- checking dirent.h presence... yes
- checking for dirent.h... yes
- checking for stdint.h... (cached) yes
- checking mach/mach_time.h usability... yes
- checking mach/mach_time.h presence... yes
- checking for mach/mach_time.h... yes
- checking io.h usability... no
- checking io.h presence... no
- checking for io.h... no
- checking winsock2.h usability... no
- checking winsock2.h presence... no
- checking for winsock2.h... no
- checking sys/timeb.h usability... yes
- checking sys/timeb.h presence... yes
- checking for sys/timeb.h... yes
- checking if libtool needs -no-undefined flag to build shared libraries... no
- checking if configure should try to set up large file support... yes
- checking for special C compiler options needed for large files... no
- checking for _FILE_OFFSET_BITS value needed for large files... no
- checking if large (64-bit) files are supported on this system.... yes
- skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined
- checking for fseeko... yes
- checking for ftello... yes
- checking for stat64... yes
- checking for fstat64... yes
- checking for off_t... yes
- checking for size_t... yes
- checking for ssize_t... yes
- checking for ptrdiff_t... yes
- checking whether byte ordering is bigendian... no
- checking size of char... 1
- checking size of short... 2
- checking size of int... 4
- checking size of unsigned... 4
- checking size of long... 8
- checking size of long long... 8
- checking size of __int64... 0
- checking size of float... 4
- checking size of double... 8
- checking size of long double... 16
- checking size of int8_t... 1
- checking size of uint8_t... 1
- checking size of int_least8_t... 1
- checking size of uint_least8_t... 1
- checking size of int_fast8_t... 1
- checking size of uint_fast8_t... 1
- checking size of int16_t... 2
- checking size of uint16_t... 2
- checking size of int_least16_t... 2
- checking size of uint_least16_t... 2
- checking size of int_fast16_t... 2
- checking size of uint_fast16_t... 2
- checking size of int32_t... 4
- checking size of uint32_t... 4
- checking size of int_least32_t... 4
- checking size of uint_least32_t... 4
- checking size of int_fast32_t... 4
- checking size of uint_fast32_t... 4
- checking size of int64_t... 8
- checking size of uint64_t... 8
- checking size of int_least64_t... 8
- checking size of uint_least64_t... 8
- checking size of int_fast64_t... 8
- checking size of uint_fast64_t... 8
- checking size of size_t... 8
- checking size of ssize_t... 8
- checking size of ptrdiff_t... 8
- checking size of off_t... 8
- checking size of off64_t... 0
- checking if dev_t is scalar... yes
- checking for dmalloc library... suppressed
- checking zlib.h usability... yes
- checking zlib.h presence... yes
- checking for zlib.h... yes
- checking for compress2 in -lz... yes
- checking for compress2... yes
- checking for szlib... suppressed
- checking for thread safe support... yes
- checking pthread.h usability... yes
- checking pthread.h presence... yes
- checking for pthread.h... yes
- checking for pthread_self in -lpthread... yes
- checking whether CLOCK_MONOTONIC is declared... no
- checking for tm_gmtoff in struct tm... yes
- checking for __tm_gmtoff in struct tm... no
- checking for global timezone variable... yes
- checking whether struct tm is in sys/time.h or time.h... time.h
- checking for struct tm.tm_zone... yes
- checking for struct timezone... yes
- checking whether gettimeofday() gives timezone... yes
- checking for st_blocks in struct stat... yes
- checking for _getvideoconfig... no
- checking for gettextinfo... no
- checking for GetConsoleScreenBufferInfo... no
- checking for _scrsize... no
- checking for ioctl... yes
- checking for struct videoconfig... no
- checking for struct text_info... no
- checking for TIOCGWINSZ... yes
- checking for TIOCGETD... yes
- checking for alarm... yes
- checking for BSDgettimeofday... no
- checking for fork... yes
- checking for frexpf... yes
- checking for frexpl... yes
- checking for gethostname... yes
- checking for getpwuid... yes
- checking for getrusage... yes
- checking for lstat... yes
- checking for rand_r... yes
- checking for random... yes
- checking for setsysinfo... no
- checking for signal... yes
- checking for longjmp... yes
- checking for setjmp... yes
- checking for siglongjmp... yes
- checking for sigsetjmp... yes
- checking for sigprocmask... yes
- checking for snprintf... yes
- checking for srandom... yes
- checking for strdup... yes
- checking for symlink... yes
- checking for system... yes
- checking for tmpfile... yes
- checking for asprintf... yes
- checking for vasprintf... yes
- checking for waitpid... yes
- checking for vsnprintf... yes
- checking if vsnprintf returns correct value... yes
- checking if lone colon can be used as an argument... no
- checking for an ANSI C-conforming const... yes
- checking for inline... inline
- checking for __attribute__ extension... yes
- checking for __func__ extension... yes
- checking for __FUNCTION__ extension... yes
- checking for C99 designated initialization support... yes
- checking how to print long long... %ld and %lu
- checking Threads support system scope... yes
- checking for debug flags... none
- checking whether function stack tracking is enabled... no
- checking whether metadata trace file code is enabled... no
- checking for API tracing... no
- checking for instrumented library... no
- checking whether to clear file buffers... yes
- checking whether a memory checking tool will be used... no
- checking for parallel support files... skipped
- checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset)
- checking for Default Virtual File Driver definition... yes
- checking for Direct Virtual File Driver support... no
- checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin
- checking whether exception handling functions is checked during data conversions... yes
- checking whether data accuracy is guaranteed during data conversions... yes
- checking if converting denormalized floating-point values is possible... yes
- checking if converting floating-point values to long long is not working... false
- checking if the machine has window style path name... no
- checking if converting from long double to integers is accurate... yes
- checking if converting from long double to integers works... yes
- checking if accurately converting from integers to long double... yes
- checking if accurately converting unsigned long to float values... yes
- checking if accurately converting unsigned long long to floating-point values... yes
- checking if accurately roundup converting floating-point to unsigned long long values... yes
- checking if right maximum converting floating-point to unsigned long long values... yes
- checking if correctly converting long double to unsigned int values... yes
- checking if compiling unsigned long long to floating-point typecasts work... yes
- checking if compiling long long to floating-point typecasts work... yes
- checking if converting unsigned long long to long double with precision... yes
- checking if overflows normally converting floating-point to integer values... yes
- checking if using special algorithm to convert long double to (unsigned) long values... no
- checking if using special algorithm to convert (unsigned) long to long double values... no
- checking if correctly converting long double to (unsigned) long long values... yes
- checking if correctly converting (unsigned) long long to long double values... yes
- checking if bad code for log2 routine is generated... no
- checking if high level library is enabled... yes
- checking additional programs should be built... no
- checking if deprecated public symbols are available... yes
- checking which version of public symbols to use by default... v18
- checking whether to perform strict file format checks... no
- checking whether to have library information embedded in the executables... yes
- checking if alignment restrictions are strictly enforced... no
- configure: creating ./config.lt
- config.lt: creating libtool
- checking that generated files are newer than configure... done
- configure: creating ./config.status
- config.status: creating src/libhdf5.settings
- config.status: creating Makefile
- config.status: creating src/Makefile
- config.status: creating test/Makefile
- config.status: creating test/testcheck_version.sh
- config.status: creating test/testerror.sh
- config.status: creating test/H5srcdir_str.h
- config.status: creating test/testlibinfo.sh
- config.status: creating test/testlinks_env.sh
- config.status: creating test/test_plugin.sh
- config.status: creating testpar/Makefile
- config.status: creating perform/Makefile
- config.status: creating tools/Makefile
- config.status: creating tools/h5dump/Makefile
- config.status: creating tools/h5dump/testh5dump.sh
- config.status: creating tools/h5dump/testh5dumppbits.sh
- config.status: creating tools/h5dump/testh5dumpxml.sh
- config.status: creating tools/h5ls/testh5ls.sh
- config.status: creating tools/h5import/Makefile
- config.status: creating tools/h5import/h5importtestutil.sh
- config.status: creating tools/h5diff/Makefile
- config.status: creating tools/h5diff/testh5diff.sh
- config.status: creating tools/h5diff/testph5diff.sh
- config.status: creating tools/h5jam/Makefile
- config.status: creating tools/h5jam/testh5jam.sh
- config.status: creating tools/h5repack/Makefile
- config.status: creating tools/h5repack/h5repack.sh
- config.status: creating tools/h5repack/h5repack_plugin.sh
- config.status: creating tools/h5ls/Makefile
- config.status: creating tools/h5copy/Makefile
- config.status: creating tools/h5copy/testh5copy.sh
- config.status: creating tools/lib/Makefile
- config.status: creating tools/misc/Makefile
- config.status: creating tools/misc/h5cc
- config.status: creating tools/misc/testh5mkgrp.sh
- config.status: creating tools/misc/testh5repart.sh
- config.status: creating tools/h5stat/testh5stat.sh
- config.status: creating tools/h5stat/Makefile
- config.status: creating examples/Makefile
- config.status: creating examples/run-c-ex.sh
- config.status: creating examples/testh5cc.sh
- config.status: creating c++/Makefile
- config.status: creating c++/src/Makefile
- config.status: creating c++/src/h5c++
- config.status: creating c++/test/Makefile
- config.status: creating c++/test/H5srcdir_str.h
- config.status: creating c++/examples/Makefile
- config.status: creating c++/examples/run-c++-ex.sh
- config.status: creating c++/examples/testh5c++.sh
- config.status: creating fortran/Makefile
- config.status: creating fortran/src/h5fc
- config.status: creating fortran/src/Makefile
- config.status: creating fortran/test/Makefile
- config.status: creating fortran/testpar/Makefile
- config.status: creating fortran/examples/Makefile
- config.status: creating fortran/examples/run-fortran-ex.sh
- config.status: creating fortran/examples/testh5fc.sh
- config.status: creating hl/Makefile
- config.status: creating hl/src/Makefile
- config.status: creating hl/test/Makefile
- config.status: creating hl/test/H5srcdir_str.h
- config.status: creating hl/tools/Makefile
- config.status: creating hl/tools/gif2h5/Makefile
- config.status: creating hl/tools/gif2h5/h52giftest.sh
- config.status: creating hl/examples/Makefile
- config.status: creating hl/examples/run-hlc-ex.sh
- config.status: creating hl/c++/Makefile
- config.status: creating hl/c++/src/Makefile
- config.status: creating hl/c++/test/Makefile
- config.status: creating hl/c++/examples/Makefile
- config.status: creating hl/c++/examples/run-hlc++-ex.sh
- config.status: creating hl/fortran/Makefile
- config.status: creating hl/fortran/src/Makefile
- config.status: creating hl/fortran/test/Makefile
- config.status: creating hl/fortran/examples/Makefile
- config.status: creating hl/fortran/examples/run-hlfortran-ex.sh
- config.status: creating src/H5config.h
- config.status: executing pubconf commands
- creating src/H5pubconf.h
- Post process src/libhdf5.settings
- config.status: executing depfiles commands
- config.status: executing libtool commands
- SUMMARY OF THE HDF5 CONFIGURATION
- =================================
- General Information:
- -------------------
- HDF5 Version: 1.8.14
- Configured on: Tue Oct 25 12:34:52 IST 2016
- Configured by: robertmckiernan@la-mckiernan
- Configure mode: production
- Host system: i386-apple-darwin13.4.0
- Uname information: Darwin la-mckiernan 13.4.0 Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 x86_64
- Byte sex: little-endian
- Libraries: static, shared
- Installation point: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/..
- Compiling Options:
- ------------------
- Compilation Mode: production
- C Compiler: /usr/bin/clang ( Apple LLVM version 6.0 )
- CFLAGS:
- H5_CFLAGS: -O3
- AM_CFLAGS:
- CPPFLAGS:
- H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API
- AM_CPPFLAGS:
- Shared C Library: yes
- Static C Library: yes
- Statically Linked Executables: no
- LDFLAGS:
- H5_LDFLAGS:
- AM_LDFLAGS: -L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib
- Extra libraries: -lpthread -lz -ldl -lm
- Archiver: ar
- Ranlib: ranlib
- Debugged Packages:
- API Tracing: no
- Languages:
- ----------
- Fortran: no
- C++: no
- Features:
- ---------
- Parallel HDF5: no
- High Level library: yes
- Threadsafety: yes
- Default API Mapping: v18
- With Deprecated Public Symbols: yes
- I/O filters (external): deflate(zlib)
- I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
- MPE: no
- Direct VFD: no
- dmalloc: no
- Clear file buffers before write: yes
- Using memory checker: no
- Function Stack Tracing: no
- Strict File Format Checks: no
- Optimization Instrumentation: no
- Large File Support (LFS): yes
- Making all in src
- /Library/Developer/CommandLineTools/usr/bin/make all-am
- CC H5.lo
- CC H5checksum.lo
- CC H5dbg.lo
- CC H5system.lo
- CC H5timer.lo
- CC H5trace.lo
- CC H5A.lo
- CC H5Abtree2.lo
- CC H5Adense.lo
- CC H5Adeprec.lo
- CC H5Aint.lo
- H5Aint.c:202:45: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (attr->shared->dt = H5T_copy(type, H5T_COPY_ALL)))
- ^~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Aint.c:529:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0 ||
- ^~~~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Aint.c:646:71: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0)
- ^~~~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 3 warnings generated.
- CC H5Atest.lo
- CC H5AC.lo
- H5AC.c:2008:22: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
- if ( ( cache_ptr == NULL )
- ~~~~~~~~~~^~~~~~~
- H5AC.c:2008:22: note: remove extraneous parentheses around the comparison to silence this warning
- if ( ( cache_ptr == NULL )
- ~~ ^ ~
- H5AC.c:2008:22: note: use '=' to turn this equality comparison into an assignment
- if ( ( cache_ptr == NULL )
- ^~
- =
- 1 warning generated.
- CC H5B.lo
- CC H5Bcache.lo
- CC H5Bdbg.lo
- CC H5B2.lo
- CC H5B2cache.lo
- CC H5B2dbg.lo
- CC H5B2hdr.lo
- CC H5B2int.lo
- CC H5B2stat.lo
- CC H5B2test.lo
- CC H5C.lo
- CC H5CS.lo
- CC H5D.lo
- CC H5Dbtree.lo
- CC H5Dchunk.lo
- H5Dchunk.c:4840:39: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (dt_mem = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))
- ^~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Dchunk.c:4848:39: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (dt_dst = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))
- ^~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 2 warnings generated.
- CC H5Dcompact.lo
- CC H5Dcontig.lo
- CC H5Ddbg.lo
- CC H5Ddeprec.lo
- CC H5Defl.lo
- CC H5Dfill.lo
- H5Dfill.c:234:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill_type, H5T_COPY_ALL), FALSE)) < 0)
- ^~~~~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Dfill.c:237:62: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(buf_type, H5T_COPY_ALL), FALSE)) < 0)
- ^~~~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Dfill.c:407:54: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_REOPEN)))
- ^~~~~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 3 warnings generated.
- CC H5Dint.lo
- H5Dint.c:638:43: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if((dset->shared->type = H5T_copy(type, H5T_COPY_ALL)) == NULL)
- ^~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 1 warning generated.
- CC H5Dio.lo
- CC H5Dlayout.lo
- CC H5Dmpio.lo
- CC H5Doh.lo
- CC H5Dscatgath.lo
- CC H5Dselect.lo
- CC H5Dtest.lo
- CC H5E.lo
- CC H5Edeprec.lo
- CC H5Eint.lo
- CC H5F.lo
- CC H5Fint.lo
- CC H5Faccum.lo
- CC H5Fcwfs.lo
- CC H5Fdbg.lo
- CC H5Fefc.lo
- CC H5Ffake.lo
- CC H5Fio.lo
- CC H5Fmount.lo
- CC H5Fmpi.lo
- CC H5Fquery.lo
- CC H5Fsfile.lo
- CC H5Fsuper.lo
- CC H5Fsuper_cache.lo
- CC H5Ftest.lo
- CC H5FD.lo
- CC H5FDcore.lo
- CC H5FDdirect.lo
- CC H5FDfamily.lo
- CC H5FDint.lo
- CC H5FDlog.lo
- CC H5FDmpi.lo
- CC H5FDmpio.lo
- CC H5FDmulti.lo
- CC H5FDsec2.lo
- CC H5FDspace.lo
- CC H5FDstdio.lo
- CC H5FL.lo
- CC H5FO.lo
- CC H5FS.lo
- CC H5FScache.lo
- CC H5FSdbg.lo
- CC H5FSsection.lo
- H5FSsection.c:2338:24: warning: passing 'const H5F_t *' (aka 'const struct H5F_t *') to parameter of type 'H5F_t *' (aka 'struct H5F_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0)
- ^
- H5FSsection.c:207:24: note: passing argument to parameter 'f' here
- H5FS_sinfo_lock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5AC_protect_t accmode)
- ^
- H5FSsection.c:2338:36: warning: passing 'const H5FS_t *' (aka 'const struct H5FS_t *') to parameter of type 'H5FS_t *' (aka 'struct H5FS_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0)
- ^~~~~~
- H5FSsection.c:207:50: note: passing argument to parameter 'fspace' here
- H5FS_sinfo_lock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, H5AC_protect_t accmode)
- ^
- H5FSsection.c:2362:32: warning: passing 'const H5FS_t *' (aka 'const struct H5FS_t *') to parameter of type 'H5FS_t *' (aka 'struct H5FS_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(H5FS_sect_remove_real(fspace, tmp_sect) < 0)
- ^~~~~~
- H5FSsection.c:859:31: note: passing argument to parameter 'fspace' here
- H5FS_sect_remove_real(H5FS_t *fspace, H5FS_section_info_t *sect)
- ^
- H5FSsection.c:2376:41: warning: passing 'const H5F_t *' (aka 'const struct H5F_t *') to parameter of type 'H5F_t *' (aka 'struct H5F_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0)
- ^
- H5FSsection.c:313:26: note: passing argument to parameter 'f' here
- H5FS_sinfo_unlock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, hbool_t modified)
- ^
- H5FSsection.c:2376:53: warning: passing 'const H5FS_t *' (aka 'const struct H5FS_t *') to parameter of type 'H5FS_t *' (aka 'struct H5FS_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0)
- ^~~~~~
- H5FSsection.c:313:52: note: passing argument to parameter 'fspace' here
- H5FS_sinfo_unlock(H5F_t *f, hid_t dxpl_id, H5FS_t *fspace, hbool_t modified)
- ^
- 5 warnings generated.
- CC H5FSstat.lo
- CC H5FStest.lo
- CC H5G.lo
- CC H5Gbtree2.lo
- CC H5Gcache.lo
- CC H5Gcompact.lo
- CC H5Gdense.lo
- CC H5Gdeprec.lo
- CC H5Gent.lo
- CC H5Gint.lo
- CC H5Glink.lo
- CC H5Gloc.lo
- CC H5Gname.lo
- CC H5Gnode.lo
- CC H5Gobj.lo
- CC H5Goh.lo
- CC H5Groot.lo
- CC H5Gstab.lo
- CC H5Gtest.lo
- CC H5Gtraverse.lo
- CC H5HF.lo
- CC H5HFbtree2.lo
- CC H5HFcache.lo
- CC H5HFdbg.lo
- CC H5HFdblock.lo
- CC H5HFdtable.lo
- CC H5HFhdr.lo
- CC H5HFhuge.lo
- CC H5HFiblock.lo
- CC H5HFiter.lo
- CC H5HFman.lo
- CC H5HFsection.lo
- CC H5HFspace.lo
- CC H5HFstat.lo
- CC H5HFtest.lo
- CC H5HFtiny.lo
- CC H5HG.lo
- CC H5HGcache.lo
- CC H5HGdbg.lo
- CC H5HGquery.lo
- CC H5HL.lo
- CC H5HLcache.lo
- CC H5HLdbg.lo
- CC H5HLint.lo
- CC H5HP.lo
- CC H5I.lo
- H5I.c:258:22: warning: comparison of constant 127 with expression of type 'H5I_type_t' (aka 'enum H5I_type_t') is always true [-Wtautological-constant-out-of-range-compare]
- if(H5I_next_type < H5I_MAX_NUM_TYPES) {
- ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
- 1 warning generated.
- CC H5Itest.lo
- CC H5L.lo
- CC H5Lexternal.lo
- CC H5make_libsettings.o
- CCLD H5make_libsettings
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \
- sed -e 's/-L/:/g' -e 's/ //g'`" \
- ./H5make_libsettings > H5lib_settings.c || \
- (test $HDF5_Make_Ignore && echo "*** Error ignored") || \
- (rm -f H5lib_settings.c ; exit 1)
- CC H5lib_settings.lo
- CC H5MF.lo
- CC H5MFaggr.lo
- CC H5MFdbg.lo
- CC H5MFsection.lo
- CC H5MM.lo
- CC H5MP.lo
- CC H5MPtest.lo
- CC H5O.lo
- CC H5Oainfo.lo
- CC H5Oalloc.lo
- CC H5Oattr.lo
- CC H5Oattribute.lo
- CC H5Obogus.lo
- CC H5Obtreek.lo
- CC H5Ocache.lo
- CC H5Ochunk.lo
- CC H5Ocont.lo
- CC H5Ocopy.lo
- CC H5Odbg.lo
- CC H5Odrvinfo.lo
- CC H5Odtype.lo
- H5Odtype.c:1188:32: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (dst = H5T_copy(src, H5T_COPY_ALL)))
- ^~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Odtype.c:1533:49: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (udata->src_dtype = H5T_copy(dt_src, H5T_COPY_TRANSIENT)))
- ^~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 2 warnings generated.
- CC H5Oefl.lo
- CC H5Ofill.lo
- CC H5Oginfo.lo
- CC H5Olayout.lo
- CC H5Olinfo.lo
- CC H5Olink.lo
- CC H5Omessage.lo
- CC H5Omtime.lo
- CC H5Oname.lo
- CC H5Onull.lo
- CC H5Opline.lo
- CC H5Orefcount.lo
- CC H5Osdspace.lo
- CC H5Oshared.lo
- CC H5Ostab.lo
- CC H5Oshmesg.lo
- CC H5Otest.lo
- CC H5Ounknown.lo
- CC H5P.lo
- CC H5Pacpl.lo
- CC H5Pdapl.lo
- CC H5Pdcpl.lo
- H5Pdcpl.c:1565:54: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(type, H5T_COPY_TRANSIENT), FALSE)) < 0)
- ^~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 1 warning generated.
- CC H5Pdeprec.lo
- CC H5Pdxpl.lo
- CC H5Pfapl.lo
- CC H5Pfcpl.lo
- CC H5Pfmpl.lo
- CC H5Pgcpl.lo
- CC H5Pint.lo
- CC H5Plapl.lo
- CC H5Plcpl.lo
- CC H5Pocpl.lo
- CC H5Pocpypl.lo
- CC H5Pstrcpl.lo
- CC H5Ptest.lo
- CC H5PL.lo
- CC H5R.lo
- CC H5Rdeprec.lo
- CC H5RC.lo
- CC H5RS.lo
- CC H5S.lo
- CC H5Sall.lo
- CC H5Sdbg.lo
- CC H5Shyper.lo
- CC H5Smpio.lo
- CC H5Snone.lo
- CC H5Spoint.lo
- CC H5Sselect.lo
- CC H5Stest.lo
- CC H5SL.lo
- CC H5SM.lo
- CC H5SMbtree2.lo
- CC H5SMcache.lo
- CC H5SMmessage.lo
- CC H5SMtest.lo
- CC H5ST.lo
- CC H5T.lo
- H5T.c:4469:35: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (path->src = H5T_copy(src, H5T_COPY_ALL)))
- ^~~
- H5T.c:3162:17: note: passing argument to parameter 'old_dt' here
- H5T_copy(H5T_t *old_dt, H5T_copy_t method)
- ^
- H5T.c:4471:42: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (path->dst = H5T_copy(dst, H5T_COPY_ALL)))
- ^~~
- H5T.c:3162:17: note: passing argument to parameter 'old_dt' here
- H5T_copy(H5T_t *old_dt, H5T_copy_t method)
- ^
- H5T.c:4519:22: warning: expression which evaluates to zero treated as a null pointer constant of type 'H5E_t *' (aka 'struct H5E_t *') [-Wnon-literal-null-conversion]
- H5E_clear_stack(H5E_DEFAULT); /*ignore the error*/
- ^~~~~~~~~~~
- ./H5Epublic.h:29:33: note: expanded from macro 'H5E_DEFAULT'
- #define H5E_DEFAULT (hid_t)0
- ^~~~~~~~
- 3 warnings generated.
- CC H5Tarray.lo
- CC H5Tbit.lo
- CC H5Tcommit.lo
- CC H5Tcompound.lo
- H5Tcompound.c:484:56: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers
- [-Wincompatible-pointer-types-discards-qualifiers]
- parent->shared->u.compnd.memb[idx].type = H5T_copy(member, H5T_COPY_ALL);
- ^~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 1 warning generated.
- CC H5Tconv.lo
- CC H5Tcset.lo
- CC H5Tdbg.lo
- CC H5Tdeprec.lo
- CC H5Tenum.lo
- H5Tenum.c:136:42: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- ret_value->shared->parent = H5T_copy(parent, H5T_COPY_ALL);
- ^~~~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Tenum.c:437:38: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (copied_dt = H5T_copy(dt, H5T_COPY_ALL)))
- ^~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- H5Tenum.c:576:35: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if (NULL==(copied_dt=H5T_copy(dt, H5T_COPY_ALL)))
- ^~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 3 warnings generated.
- CC H5Tfields.lo
- CC H5Tfixed.lo
- CC H5Tfloat.lo
- CC H5detect.o
- CCLD H5detect
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \
- sed -e 's/-L/:/g' -e 's/ //g'`" \
- ./H5detect > H5Tinit.c || \
- (test $HDF5_Make_Ignore && echo "*** Error ignored") || \
- (rm -f H5Tinit.c ; exit 1)
- CC H5Tinit.lo
- CC H5Tnative.lo
- CC H5Toffset.lo
- CC H5Toh.lo
- CC H5Topaque.lo
- CC H5Torder.lo
- CC H5Tpad.lo
- CC H5Tprecis.lo
- CC H5Tstrpad.lo
- CC H5Tvisit.lo
- CC H5Tvlen.lo
- H5Tvlen.c:168:47: warning: passing 'const H5T_t *' (aka 'const struct H5T_t *') to parameter of type 'H5T_t *' (aka 'struct H5T_t *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- if(NULL == (dt->shared->parent = H5T_copy(base, H5T_COPY_ALL)))
- ^~~~
- ./H5Tprivate.h:109:31: note: passing argument to parameter 'old_dt' here
- H5_DLL H5T_t *H5T_copy(H5T_t *old_dt, H5T_copy_t method);
- ^
- 1 warning generated.
- CC H5TS.lo
- CC H5VM.lo
- CC H5WB.lo
- CC H5Z.lo
- CC H5Zdeflate.lo
- CC H5Zfletcher32.lo
- CC H5Znbit.lo
- CC H5Zshuffle.lo
- CC H5Zszip.lo
- CC H5Zscaleoffset.lo
- CC H5Ztrans.lo
- CCLD libhdf5.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5CS.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Dmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Fmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDdirect.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5MFdbg.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Obogus.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Smpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Zszip.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5CS.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Dmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Fmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDdirect.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5FDmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5MFdbg.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Obogus.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Smpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: .libs/libhdf5.a(H5Zszip.o) has no symbols
- Making all in test
- CC dynlib1.lo
- CCLD libdynlib1.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dynlib2.lo
- CCLD libdynlib2.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dynlib3.lo
- CCLD libdynlib3.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5test.lo
- CC testframe.lo
- testframe.c:618:31: warning: incompatible pointer types passing 'H5E_auto2_t *' (aka 'herr_t (**)(hid_t, void *)') to parameter of type 'H5E_auto2_t' (aka 'herr_t (*)(hid_t, void *)'); dereference with *
- [-Wincompatible-pointer-types]
- H5Eset_auto2(H5E_DEFAULT, PrintErrorStackFunc, PrintErrorStackData);
- ^~~~~~~~~~~~~~~~~~~
- *
- ../src/H5Epublic.h:174:57: note: passing argument to parameter 'func' here
- H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
- ^
- 1 warning generated.
- CC cache_common.lo
- CCLD libh5test.la
- CC testhdf5.o
- CC tarray.o
- CC tattr.o
- CC tchecksum.o
- CC tconfig.o
- tconfig.c:126:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(char, H5_SIZEOF_CHAR);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:127:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(signed char, unsigned char, H5_SIZEOF_CHAR);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:127:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(signed char, unsigned char, H5_SIZEOF_CHAR);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:128:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int, unsigned int, H5_SIZEOF_INT);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:128:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int, unsigned int, H5_SIZEOF_INT);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:129:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(short, unsigned short, H5_SIZEOF_SHORT);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:129:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(short, unsigned short, H5_SIZEOF_SHORT);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:130:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(long, unsigned long, H5_SIZEOF_LONG);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:130:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(long, unsigned long, H5_SIZEOF_LONG);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:131:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(float, H5_SIZEOF_FLOAT);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:132:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(double, H5_SIZEOF_DOUBLE);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:134:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(long double, H5_SIZEOF_LONG_DOUBLE);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:139:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(long long, unsigned long long, H5_SIZEOF_LONG_LONG);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:139:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(long long, unsigned long long, H5_SIZEOF_LONG_LONG);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:143:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int8_t, uint8_t, H5_SIZEOF_INT8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:143:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int8_t, uint8_t, H5_SIZEOF_INT8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:147:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int16_t, uint16_t, H5_SIZEOF_INT16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:147:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int16_t, uint16_t, H5_SIZEOF_INT16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:151:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int32_t, uint32_t, H5_SIZEOF_INT32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:151:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int32_t, uint32_t, H5_SIZEOF_INT32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:155:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int64_t, uint64_t, H5_SIZEOF_INT64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:155:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int64_t, uint64_t, H5_SIZEOF_INT64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:161:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(int_fast8_t, H5_SIZEOF_INT_FAST8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:165:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(uint_fast8_t, H5_SIZEOF_UINT_FAST8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:169:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast16_t, uint_fast16_t, H5_SIZEOF_INT_FAST16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:169:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast16_t, uint_fast16_t, H5_SIZEOF_INT_FAST16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:173:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast32_t, uint_fast32_t, H5_SIZEOF_INT_FAST32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:173:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast32_t, uint_fast32_t, H5_SIZEOF_INT_FAST32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:177:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast64_t, uint_fast64_t, H5_SIZEOF_INT_FAST64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:177:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_fast64_t, uint_fast64_t, H5_SIZEOF_INT_FAST64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:181:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least8_t, uint_least8_t, H5_SIZEOF_INT_LEAST8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:181:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least8_t, uint_least8_t, H5_SIZEOF_INT_LEAST8_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:185:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least16_t, uint_least16_t, H5_SIZEOF_INT_LEAST16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:185:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least16_t, uint_least16_t, H5_SIZEOF_INT_LEAST16_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:189:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least32_t, uint_least32_t, H5_SIZEOF_INT_LEAST32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:189:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least32_t, uint_least32_t, H5_SIZEOF_INT_LEAST32_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:193:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least64_t, uint_least64_t, H5_SIZEOF_INT_LEAST64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:33:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(ctype, ctype_macro, #ctype_macro);\
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:193:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_cint_type(int_least64_t, uint_least64_t, H5_SIZEOF_INT_LEAST64_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:35:5: note: expanded from macro 'vrfy_cint_type'
- vrfy_macrosize(uctype, ctype_macro, #ctype_macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:202:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(off_t, H5_SIZEOF_OFF_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:206:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(size_t, H5_SIZEOF_SIZE_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- tconfig.c:210:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
- vrfy_ctype(ssize_t, H5_SIZEOF_SSIZE_T);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:39:5: note: expanded from macro 'vrfy_ctype'
- vrfy_macrosize(type, macro, #macro);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
- tconfig.c:46:13: note: expanded from macro 'vrfy_macrosize'
- #type, sizeof(type), macroname, macro);
- ^~~~~~~~~~~~
- 41 warnings generated.
- CC tfile.o
- CC tgenprop.o
- CC th5o.o
- CC th5s.o
- CC tcoords.o
- CC theap.o
- CC tid.o
- tid.c:480:15: warning: comparison of constant 127 with expression of type 'H5I_type_t' (aka 'enum H5I_type_t') is always false [-Wtautological-constant-out-of-range-compare]
- if(startType >= H5I_MAX_NUM_TYPES || startType < H5I_NTYPES)
- ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
- 1 warning generated.
- CC titerate.o
- CC tmeta.o
- CC tmisc.o
- tmisc.c:2713:63: warning: incompatible pointer to integer conversion initializing 'const char' with an expression of type 'void *' [-Wint-conversion]
- {"1234567", "1234567\0", "12345678", {NULL}};
- ^~~~
- /Library/Developer/CommandLineTools/usr/bin/../lib/clang/6.0/include/stddef.h:77:16: note: expanded from macro 'NULL'
- # define NULL ((void*)0)
- ^~~~~~~~~~
- tmisc.c:2792:63: warning: incompatible pointer to integer conversion initializing 'const char' with an expression of type 'void *' [-Wint-conversion]
- {"1234567", "1234567\0", "12345678", {NULL}};
- ^~~~
- /Library/Developer/CommandLineTools/usr/bin/../lib/clang/6.0/include/stddef.h:77:16: note: expanded from macro 'NULL'
- # define NULL ((void*)0)
- ^~~~~~~~~~
- 2 warnings generated.
- CC trefer.o
- trefer.c:496:44: warning: implicit conversion from 'int' to 'unsigned char' changes value from 1000000000 to 0 [-Wconstant-conversion]
- hdset_reg_ref_t nvrbuf[3]={{0},{101},{1000000000}}; /* buffer with non-valid refs */
- ~^~~~~~~~~~
- 1 warning generated.
- CC trefstr.o
- CC tselect.o
- CC tskiplist.o
- CC tsohm.o
- tsohm.c:1282:5: warning: format specifies type 'char *' but the argument has type 'int (*)(const void *, const void *, unsigned long)' [-Wformat]
- VERIFY(ret, 0, memcmp);
- ^~~~~~~~~~~~~~~~~~~~~~
- ./testhdf5.h:80:17: note: expanded from macro 'VERIFY'
- "in %s\n", (where), __val, __x, (int)__LINE__, __FILE__); \
- ^~~~~~~
- tsohm.c:1353:5: warning: format specifies type 'char *' but the argument has type 'int (*)(const void *, const void *, unsigned long)' [-Wformat]
- VERIFY(ret, 0, memcmp);
- ^~~~~~~~~~~~~~~~~~~~~~
- ./testhdf5.h:80:17: note: expanded from macro 'VERIFY'
- "in %s\n", (where), __val, __x, (int)__LINE__, __FILE__); \
- ^~~~~~~
- 2 warnings generated.
- CC ttime.o
- CC ttst.o
- CC tunicode.o
- CC tvlstr.o
- CC tvltypes.o
- CCLD testhdf5
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC lheap.o
- CCLD lheap
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC ohdr.o
- CCLD ohdr
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC stab.o
- CCLD stab
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC gheap.o
- CCLD gheap
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC cache.o
- cache.c:25754:23: warning: implicit declaration of function 'resize_configs_are_equal' is invalid in C99 [-Wimplicit-function-declaration]
- } else if ( ! resize_configs_are_equal(&test_auto_size_ctl, \
- ^
- 1 warning generated.
- CCLD cache
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC cache_api.o
- cache_api.c:265:9: warning: implicit declaration of function 'resize_configs_are_equal' is invalid in C99 [-Wimplicit-function-declaration]
- if ( ! resize_configs_are_equal(&default_auto_size_ctl, \
- ^
- 1 warning generated.
- CCLD cache_api
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC pool.o
- CCLD pool
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC accum.o
- CCLD accum
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC hyperslab.o
- CCLD hyperslab
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC istore.o
- CCLD istore
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC bittests.o
- CCLD bittests
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dt_arith.o
- dt_arith.c:4715:55: warning: format specifies type 'long' but the argument has type 'long long' [-Wformat]
- printf(" %29"H5_PRINTF_LL_WIDTH"d\n", *((long long*)hw));
- ~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~
- %29lld
- dt_arith.c:4718:55: warning: format specifies type 'unsigned long' but the argument has type 'unsigned long long' [-Wformat]
- printf(" %29"H5_PRINTF_LL_WIDTH"u\n", *((unsigned long long*)hw));
- ~~~~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~
- %29llu
- 2 warnings generated.
- CCLD dt_arith
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dtypes.o
- CCLD dtypes
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dsets.o
- CCLD dsets
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC cmpd_dset.o
- CCLD cmpd_dset
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC filter_fail.o
- CCLD filter_fail
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC extend.o
- CCLD extend
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC external.o
- CCLD external
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC efc.o
- CCLD efc
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC objcopy.o
- CCLD objcopy
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC links.o
- CCLD links
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC unlink.o
- CCLD unlink
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC big.o
- CCLD big
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC mtime.o
- CCLD mtime
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC fillval.o
- CCLD fillval
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC mount.o
- CCLD mount
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC flush1.o
- CCLD flush1
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC flush2.o
- CCLD flush2
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC app_ref.o
- CCLD app_ref
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC enum.o
- CCLD enum
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC set_extent.o
- CCLD set_extent
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC ttsafe.o
- CC ttsafe_dcreate.o
- CC ttsafe_error.o
- CC ttsafe_cancel.o
- CC ttsafe_acreate.o
- CCLD ttsafe
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC getname.o
- CCLD getname
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC vfd.o
- CCLD vfd
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC ntypes.o
- CCLD ntypes
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dangle.o
- CCLD dangle
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC dtransform.o
- CCLD dtransform
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC reserved.o
- CCLD reserved
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC cross_read.o
- CCLD cross_read
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC freespace.o
- CCLD freespace
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC mf.o
- CCLD mf
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC btree2.o
- CCLD btree2
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC fheap.o
- CCLD fheap
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC file_image.o
- CCLD file_image
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC unregister.o
- CCLD unregister
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC error_test.o
- CCLD error_test
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC err_compat.o
- CCLD err_compat
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC tcheck_version.o
- CCLD tcheck_version
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC testmeta.o
- CCLD testmeta
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC links_env.o
- CCLD links_env
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC plugin.o
- CCLD plugin
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in tools
- Making all in lib
- CC h5tools.lo
- CC h5tools_dump.lo
- CC h5tools_str.lo
- CC h5tools_utils.lo
- CC h5diff.lo
- CC h5diff_array.lo
- CC h5diff_attr.lo
- CC h5diff_dset.lo
- CC h5diff_util.lo
- CC h5trav.lo
- CC h5tools_filters.lo
- CC h5tools_ref.lo
- CC h5tools_type.lo
- CCLD libh5tools.la
- Making all in h5diff
- CC h5diff_main.o
- CC h5diff_common.o
- CCLD h5diff
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5diffgentest.o
- h5diffgentest.c:3696:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp1_buf.str_vlen = comp1_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3697:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp2_buf.str_vlen = comp2_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3698:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp3_buf.str_vlen = comp3_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3699:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp4_buf.str_vlen = comp4_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3700:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp5_buf.str_vlen = comp5_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3701:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp6_buf.str_vlen = comp6_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3702:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp7_buf.str_vlen = comp7_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3703:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp8_buf.str_vlen = comp8_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3704:52: warning: assigning to 'char *' from 'const char [23]' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp9_buf.str_vlen = comp9_buf.str_vlen_repeat = vlen_str_buf;
- ^ ~~~~~~~~~~~~
- h5diffgentest.c:3740:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp1_buf.str_array_vlen[i] = comp1_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3741:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp2_buf.str_array_vlen[i] = comp2_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3742:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp3_buf.str_array_vlen[i] = comp3_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3743:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp4_buf.str_array_vlen[i] = comp4_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3744:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp5_buf.str_array_vlen[i] = comp5_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3745:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp6_buf.str_array_vlen[i] = comp6_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3746:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp7_buf.str_array_vlen[i] = comp7_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3747:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp8_buf.str_array_vlen[i] = comp8_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- h5diffgentest.c:3748:73: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers]
- comp9_buf.str_array_vlen[i] = comp9_buf.str_vlen_array_again[i] = vlen_str_array_buf[i];
- ^ ~~~~~~~~~~~~~~~~~~~~~
- 18 warnings generated.
- CCLD h5diffgentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5ls
- CC h5ls.o
- CCLD h5ls
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5dump
- CC h5dump.o
- h5dump.c:1488:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->filebegin, fname, h5tools_dump_header_format->fileblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- 1 warning generated.
- CC h5dump_ddl.o
- h5dump_ddl.c:847:60: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- ^~~~~~~~~~~~~~~~~~~~~~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_ddl.c:1758:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->datasetbegin, real_name, h5tools_dump_header_format->datasetblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1814:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->groupbegin, real_name, h5tools_dump_header_format->groupblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1874:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->softlinkbegin, links, h5tools_dump_header_format->softlinkblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1879:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- else {
- ^
- h5dump_ddl.c:1887:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1890:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->extlinkbegin, links, h5tools_dump_header_format->extlinkblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1917:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1920:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->udlinkbegin, links, h5tools_dump_header_format->udlinkblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- h5dump_ddl.c:1965:56: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(name, "/#"H5_PRINTF_HADDR_FMT, type_table->objs[idx].objno);
- ^~~~~~~~~~~~~~~~~~~~~~~~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_ddl.c:1978:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
- begin_obj(h5tools_dump_header_format->datatypebegin, real_name, h5tools_dump_header_format->datatypeblockbegin);
- ^
- ./h5dump_defines.h:30:9: note: expanded from macro 'begin_obj'
- else \
- ^
- 11 warnings generated.
- CC h5dump_xml.o
- h5dump_xml.c:593:64: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
- ^~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_xml.c:604:60: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
- ^~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_xml.c:613:48: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(outstr, "xid_"H5_PRINTF_HADDR_FMT, objno);
- ^~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_xml.c:2803:72: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- ^~~~~~~~~~~~~~~~~~~~~~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- h5dump_xml.c:2886:64: warning: format specifies type 'unsigned long' but the argument has type 'haddr_t' (aka 'unsigned long long') [-Wformat]
- sprintf(type_name, "#"H5_PRINTF_HADDR_FMT, type_table->objs[u].objno);
- ^~~~~~~~~~~~~~~~~~~~~~~~~
- /usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
- __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
- ^
- 5 warnings generated.
- CCLD h5dump
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5dumpgentest.o
- CCLD h5dumpgentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC binread.o
- CCLD binread
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in misc
- CC h5debug.o
- CCLD h5debug
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5repart.o
- CCLD h5repart
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5mkgrp.o
- CCLD h5mkgrp
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5repart_gentest.o
- CCLD h5repart_gentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC talign.o
- CCLD talign
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC repart_test.o
- CCLD repart_test
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5import
- CC h5import.o
- CCLD h5import
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5importtest.o
- CCLD h5importtest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5repack
- CC dynlib_rpk.lo
- CCLD libdynlibadd.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5repack.o
- CC h5repack_copy.o
- CC h5repack_filters.o
- CC h5repack_opttable.o
- CC h5repack_parse.o
- CC h5repack_refs.o
- CC h5repack_verify.o
- CC h5repack_main.o
- CCLD h5repack
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC testh5repack_detect_szip.o
- CCLD testh5repack_detect_szip
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5repacktst.o
- CCLD h5repacktst
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5jam
- CC h5jam.o
- CCLD h5jam
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5unjam.o
- CCLD h5unjam
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC tellub.o
- CCLD tellub
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5jamgentest.o
- CCLD h5jamgentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC getub.o
- CCLD getub
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5copy
- CC h5copy.o
- CCLD h5copy
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5copygentest.o
- CCLD h5copygentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in h5stat
- CC h5stat.o
- CCLD h5stat
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h5stat_gentest.o
- CCLD h5stat_gentest
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- make[3]: Nothing to be done for `all-am'.
- Making all in .
- CC sio_perf.o
- CC sio_engine.o
- CC sio_timer.o
- CCLD h5perf_serial
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC iopipe.o
- CCLD iopipe
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC chunk.o
- CCLD chunk
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC overhead.o
- CCLD overhead
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC zip_perf.o
- CCLD zip_perf
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC perf_meta.o
- CCLD perf_meta
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC perf.o
- CCLD perf
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in hl
- Making all in src
- CC H5DO.lo
- CC H5DS.lo
- CC H5IM.lo
- CC H5LT.lo
- CC H5LTanalyze.lo
- H5LTanalyze.c:2084:40: warning: implicit declaration of function 'isatty' is invalid in C99 [-Wimplicit-function-declaration]
- b->yy_is_interactive = file ? (isatty( fileno(file) ) > 0) : 0;
- ^
- 1 warning generated.
- CC H5LTparse.lo
- CC H5PT.lo
- CC H5TB.lo
- CCLD libhdf5_hl.la
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in test
- CC test_lite.o
- CCLD test_lite
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_image.o
- CCLD test_image
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_file_image.o
- CCLD test_file_image
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_table.o
- CCLD test_table
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_ds.o
- CCLD test_ds
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_packet.o
- CCLD test_packet
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC test_dset_opt.o
- CCLD test_dset_opt
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making all in tools
- Making all in gif2h5
- CC gif2hdf.o
- CC gif2mem.o
- CC decompress.o
- CC gifread.o
- CC writehdf.o
- CCLD gif2h5
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC hdf2gif.o
- CC hdfgifwr.o
- CCLD h52gif
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- CC h52gifgentst.o
- CCLD h52gifgentst
- ld: warning: directory not found for option '-L/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- make[4]: Nothing to be done for `all-am'.
- make[3]: Nothing to be done for `all-am'.
- Making all in perform
- make[2]: Nothing to be done for `all'.
- Making install in src
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /bin/sh ../libtool --mode=install /usr/bin/install -c libhdf5.la '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- libtool: install: /usr/bin/install -c .libs/libhdf5.9.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.9.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libhdf5.9.dylib libhdf5.dylib || { rm -f libhdf5.dylib && ln -s libhdf5.9.dylib libhdf5.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libhdf5.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.la
- libtool: install: /usr/bin/install -c .libs/libhdf5.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5CS.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5Dmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5Fmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5FDdirect.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5FDmpi.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5FDmpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5MFdbg.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5Obogus.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5Smpio.o) has no symbols
- /Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5.a(H5Zszip.o) has no symbols
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../include'
- /usr/bin/install -c -m 644 hdf5.h H5api_adpt.h H5overflow.h H5pubconf.h H5public.h H5version.h H5Apublic.h H5ACpublic.h H5Cpublic.h H5Dpublic.h H5Epubgen.h H5Epublic.h H5Fpublic.h H5FDpublic.h H5FDcore.h H5FDdirect.h H5FDfamily.h H5FDlog.h H5FDmpi.h H5FDmpio.h H5FDmulti.h H5FDsec2.h H5FDstdio.h H5Gpublic.h H5Ipublic.h H5Lpublic.h H5MMpublic.h H5Opublic.h H5Ppublic.h H5PLextern.h H5Rpublic.h H5Spublic.h H5Tpublic.h H5Zpublic.h '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../include'
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /usr/bin/install -c -m 644 libhdf5.settings '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- Making install in test
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /bin/sh ../libtool --mode=install /usr/bin/install -c libdynlib1.la libdynlib2.la libdynlib3.la '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- libtool: install: /usr/bin/install -c .libs/libdynlib1.0.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib1.0.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libdynlib1.0.dylib libdynlib1.dylib || { rm -f libdynlib1.dylib && ln -s libdynlib1.0.dylib libdynlib1.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libdynlib1.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib1.la
- libtool: install: /usr/bin/install -c .libs/libdynlib2.0.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib2.0.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libdynlib2.0.dylib libdynlib2.dylib || { rm -f libdynlib2.dylib && ln -s libdynlib2.0.dylib libdynlib2.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libdynlib2.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib2.la
- libtool: install: /usr/bin/install -c .libs/libdynlib3.0.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib3.0.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libdynlib3.0.dylib libdynlib3.dylib || { rm -f libdynlib3.dylib && ln -s libdynlib3.0.dylib libdynlib3.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libdynlib3.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib3.la
- libtool: install: /usr/bin/install -c .libs/libdynlib1.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib1.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib1.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib1.a
- libtool: install: /usr/bin/install -c .libs/libdynlib2.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib2.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib2.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib2.a
- libtool: install: /usr/bin/install -c .libs/libdynlib3.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib3.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib3.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlib3.a
- /Library/Developer/CommandLineTools/usr/bin/make install-exec-hook
- rm -f /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/*dynlib*
- make[3]: Nothing to be done for `install-data-am'.
- Making install in tools
- Making install in lib
- make[4]: Nothing to be done for `install-exec-am'.
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5diff
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5diff '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5diff /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5diff
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5ls
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5ls '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5ls /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5ls
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5dump
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5dump '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5dump /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5dump
- make[4]: Nothing to be done for `install-data-am'.
- Making install in misc
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5debug h5repart h5mkgrp '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5debug /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5debug
- libtool: install: /usr/bin/install -c .libs/h5repart /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5repart
- libtool: install: /usr/bin/install -c .libs/h5mkgrp /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5mkgrp
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /usr/bin/install -c h5redeploy '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5import
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5import '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5import /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5import
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5repack
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c libdynlibadd.la '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- libtool: install: /usr/bin/install -c .libs/libdynlibadd.0.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlibadd.0.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libdynlibadd.0.dylib libdynlibadd.dylib || { rm -f libdynlibadd.dylib && ln -s libdynlibadd.0.dylib libdynlibadd.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libdynlibadd.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlibadd.la
- libtool: install: /usr/bin/install -c .libs/libdynlibadd.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlibadd.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlibadd.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libdynlibadd.a
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5repack '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5repack /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5repack
- /Library/Developer/CommandLineTools/usr/bin/make install-exec-hook
- rm -f /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/*dynlib*
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5jam
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5jam h5unjam '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5jam /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5jam
- libtool: install: /usr/bin/install -c .libs/h5unjam /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5unjam
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5copy
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5copy '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5copy /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5copy
- make[4]: Nothing to be done for `install-data-am'.
- Making install in h5stat
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c h5stat '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5stat /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5stat
- make[4]: Nothing to be done for `install-data-am'.
- make[4]: Nothing to be done for `install-exec-am'.
- make[4]: Nothing to be done for `install-data-am'.
- Making install in .
- make[3]: Nothing to be done for `all'.
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../libtool --mode=install /usr/bin/install -c h5perf_serial '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5perf_serial /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5perf_serial
- make[5]: Nothing to be done for `install-data-am'.
- make[3]: Nothing to be done for `install-data-am'.
- Making install in hl
- Making install in src
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- /bin/sh ../../libtool --mode=install /usr/bin/install -c libhdf5_hl.la '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib'
- libtool: install: /usr/bin/install -c .libs/libhdf5_hl.9.dylib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5_hl.9.dylib
- libtool: install: (cd /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib && { ln -s -f libhdf5_hl.9.dylib libhdf5_hl.dylib || { rm -f libhdf5_hl.dylib && ln -s libhdf5_hl.9.dylib libhdf5_hl.dylib; }; })
- libtool: install: /usr/bin/install -c .libs/libhdf5_hl.lai /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5_hl.la
- libtool: install: /usr/bin/install -c .libs/libhdf5_hl.a /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5_hl.a
- libtool: install: chmod 644 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5_hl.a
- libtool: install: ranlib /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../lib/libhdf5_hl.a
- ../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../include'
- /usr/bin/install -c -m 644 hdf5_hl.h H5DOpublic.h H5IMpublic.h H5LTpublic.h H5TBpublic.h H5DSpublic.h H5PTpublic.h '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../include'
- Making install in test
- make[4]: Nothing to be done for `install-exec-am'.
- make[4]: Nothing to be done for `install-data-am'.
- Making install in tools
- Making install in gif2h5
- ../../../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../../../libtool --mode=install /usr/bin/install -c gif2h5 h52gif '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/gif2h5 /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/gif2h5
- libtool: install: /usr/bin/install -c .libs/h52gif /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h52gif
- make[5]: Nothing to be done for `install-data-am'.
- make[5]: Nothing to be done for `install-exec-am'.
- make[5]: Nothing to be done for `install-data-am'.
- make[4]: Nothing to be done for `install-exec-am'.
- make[4]: Nothing to be done for `install-data-am'.
- Making install in perform
- ../bin/install-sh -c -d '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- /bin/sh ../libtool --mode=install /usr/bin/install -c h5perf_serial '/Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin'
- libtool: install: /usr/bin/install -c .libs/h5perf_serial /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../bin/h5perf_serial
- make[3]: Nothing to be done for `install-data-am'.
- + for d in examples hl
- + cd examples
- + /Library/Developer/CommandLineTools/usr/bin/make install-examples
- ../bin/mkdirs /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c
- + /usr/bin/install -c ./h5_write.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_read.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_extend_write.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_chunk_read.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_crtgrpd.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_subset.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_cmprss.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_rdwt.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_crtgrpar.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_extend.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_crtatt.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_crtgrp.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_crtdat.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_compound.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_group.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_select.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_attribute.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_mount.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_reference.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_drivers.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_extlink.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_elink_unix2win.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_ref2reg.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./h5_shared_mesg.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./ph5example.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c run-c-ex.sh /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/c/.
- + /usr/bin/install -c ./README /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/.
- + /usr/bin/install -c ./run-all-ex.sh /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/.
- + for d in examples hl
- + cd hl
- + /Library/Developer/CommandLineTools/usr/bin/make install-examples
- + for d in examples
- + cd examples
- + /Library/Developer/CommandLineTools/usr/bin/make install-examples
- ../../bin/mkdirs /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c
- + /usr/bin/install -c ./ex_lite1.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_lite2.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_lite3.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ptExampleFL.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_image1.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_image2.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_01.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_02.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_03.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_04.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_05.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_06.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_07.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_08.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_09.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_10.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_11.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_table_12.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./ex_ds1.c /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./image24pixel.txt /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./image8.txt /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./pal_rgb.h /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c run-hlc-ex.sh /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/c/.
- + /usr/bin/install -c ./run-hl-ex.sh /Users/robertmckiernan/soft/nanopolish-0.4.0/hdf5-1.8.14/../share/hdf5_examples/hl/.
- rm -f ./.depend
- /opt/local/bin/g++-mp-4.8 -g -O3 -std=c++11 -fopenmp -I./include -I./htslib -I./fast5 -I./src -I./src/hmm -I./src/thirdparty -I./src/common -I./src/alignment -MM src/nanopolish_call_variants.cpp src/nanopolish_consensus.cpp src/nanopolish_getmodel.cpp src/nanopolish_haplotype.cpp src/nanopolish_methyltest.cpp src/nanopolish_methyltrain.cpp src/nanopolish_poremodel.cpp src/nanopolish_squiggle_read.cpp src/hmm/nanopolish_profile_hmm.cpp src/hmm/nanopolish_transition_parameters.cpp src/common/logsum.cpp src/common/nanopolish_alphabet.cpp src/common/nanopolish_common.cpp src/common/nanopolish_fast5_map.cpp src/common/nanopolish_iupac.cpp src/common/nanopolish_klcs.cpp src/common/nanopolish_variant.cpp src/alignment/nanopolish_alignment_db.cpp src/alignment/nanopolish_anchor.cpp src/alignment/nanopolish_eventalign.cpp src/thirdparty/stdaln.c > ./.depend;
- src/nanopolish_call_variants.cpp:24:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- In file included from src/nanopolish_consensus.cpp:22:0:
- src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- src/nanopolish_getmodel.cpp:23:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- src/nanopolish_methyltest.cpp:23:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- src/nanopolish_methyltrain.cpp:23:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- In file included from src/nanopolish_poremodel.cpp:9:0:
- src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- In file included from src/nanopolish_squiggle_read.h:13:0,
- from src/nanopolish_squiggle_read.cpp:11:
- src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- In file included from ./src/nanopolish_squiggle_read.h:13:0,
- from src/hmm/nanopolish_emissions.h:14,
- from src/hmm/nanopolish_profile_hmm.h:16,
- from src/hmm/nanopolish_profile_hmm.cpp:9:
- ./src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- In file included from src/hmm/nanopolish_transition_parameters.cpp:12:0:
- ./src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- In file included from ./src/nanopolish_squiggle_read.h:13:0,
- from src/common/nanopolish_common.cpp:13:
- ./src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- src/common/nanopolish_fast5_map.cpp:17:25: fatal error: htslib/kseq.h: No such file or directory
- #include "htslib/kseq.h"
- ^
- compilation terminated.
- In file included from ./src/nanopolish_squiggle_read.h:13:0,
- from ./src/hmm/nanopolish_emissions.h:14,
- from ./src/hmm/nanopolish_profile_hmm.h:16,
- from src/common/nanopolish_variant.cpp:10:
- ./src/nanopolish_poremodel.h:16:34: fatal error: ../fast5/src/fast5.hpp: No such file or directory
- #include "../fast5/src/fast5.hpp"
- ^
- compilation terminated.
- In file included from src/alignment/nanopolish_alignment_db.h:15:0,
- from src/alignment/nanopolish_alignment_db.cpp:11:
- src/alignment/nanopolish_anchor.h:13:24: fatal error: htslib/hts.h: No such file or directory
- #include "htslib/hts.h"
- ^
- compilation terminated.
- src/alignment/nanopolish_anchor.cpp:13:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- src/alignment/nanopolish_eventalign.cpp:22:26: fatal error: htslib/faidx.h: No such file or directory
- #include "htslib/faidx.h"
- ^
- compilation terminated.
- make: *** [.depend] Error 1
Advertisement
Add Comment
Please, Sign In to add comment
Advertisement
