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- Installing netcdf with mpich ...
- configure: netCDF 4.3.3.1
- checking build system type... x86_64-unknown-linux-gnu
- checking host system type... x86_64-unknown-linux-gnu
- checking target system type... x86_64-unknown-linux-gnu
- checking for a BSD-compatible install... /usr/bin/install -c
- checking whether build environment is sane... yes
- checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
- checking for gawk... gawk
- checking whether make sets $(MAKE)... yes
- checking whether make supports nested variables... yes
- checking whether to enable maintainer-specific portions of Makefiles... no
- configure: checking user options
- checking whether a win32 DLL is desired... no
- checking whether a NCIO_MINBLOCKSIZE was specified... 256
- checking if fsync support is enabled... no
- checking if jna bug workaround is enabledd... no
- checking whether extra valgrind tests should be run... no
- checking whether we should try to build netCDF-4... yes
- checking do we require hdf5 dynamic-loading support... yes
- checking whether reading of HDF4 SD files is to be enabled... no
- checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
- checking whether we should attempt to install netcdf-fortran (EXPERIMENTAL)... no
- checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no
- checking whether extra example tests should be run... no
- checking whether parallel IO tests should be run... yes
- checking whether a default chunk size in bytes was specified... 4194304
- checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
- checking whether a number of chunks for the default per-variable cache was specified... 10
- checking whether a default file cache size for HDF5 was specified... 4194304
- checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
- checking whether a default cache preemption for HDF5 was specified... 0.75
- checking whether netCDF-4 logging is enabled... no
- checking whether cdmremote client is to be built... no
- checking whether DAP client is to be built... yes
- checking for style of include used by make... GNU
- checking for gcc... /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
- checking whether the C compiler works... yes
- checking for C compiler default output file name... a.out
- checking for suffix of executables...
- checking whether we are cross compiling... no
- checking for suffix of object files... o
- checking whether we are using the GNU C compiler... yes
- checking whether /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc accepts -g... yes
- checking for /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc option to accept ISO C89... none needed
- checking whether /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc understands -c and -o together... yes
- checking dependency style of /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc... gcc3
- checking for curl_easy_setopt in -lcurl... no
- configure: libcurl not found; disabling remote protocol(s) support
- checking whether dap remote testing should be enabled (default on)... no
- checking whether dap remote authorization testing should be enabled (default off)... no
- checking whether netcdf4 group names should be enabled (default on)... configure: dap groups disabled because dap disabled or netcdf-4 disabled
- no
- checking whether the time-consuming dap tests should be enabled (default off)... no
- checking whether netCDF extra tests should be run (developers only)... no
- checking whether FFIO will be used... no
- checking whether examples should be built... yes
- checking whether v2 netCDF API should be built... yes
- checking whether the ncgen/ncdump/nccopy should be built... yes
- checking whether test should be built and run... yes
- checking whether large file (> 2GB) tests should be run... no
- checking whether benchmaks should be run (experimental)... no
- checking whether extreme numbers should be used in tests... yes
- checking where to put large temp files if large file tests are run... .
- configure: finding C compiler
- checking for gcc... (cached) /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
- checking whether we are using the GNU C compiler... (cached) yes
- checking whether /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc accepts -g... (cached) yes
- checking for /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc option to accept ISO C89... (cached) none needed
- checking whether /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc understands -c and -o together... (cached) yes
- checking dependency style of /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc... (cached) gcc3
- checking for an ANSI C-conforming const... yes
- checking whether CURLOPT_USERNAME is defined... no
- checking whether CURLOPT_PASSWORD is defined... no
- checking whether CURLOPT_KEYPASSWD is defined... no
- checking whether CURLINFO_RESPONSE_CODE is defined... no
- checking whether CURLOPT_CHUNK_BGN_FUNCTION is defined... no
- configure: setting up libtool
- checking how to print strings... printf
- checking for a sed that does not truncate output... /usr/bin/sed
- checking for grep that handles long lines and -e... /usr/bin/grep
- checking for egrep... /usr/bin/grep -E
- checking for fgrep... /usr/bin/grep -F
- checking for ld used by /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc... /usr/x86_64-suse-linux/bin/ld
- checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes
- checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
- checking the name lister (/usr/bin/nm -B) interface... BSD nm
- checking whether ln -s works... yes
- checking the maximum length of command line arguments... 1572864
- checking whether the shell understands some XSI constructs... yes
- checking whether the shell understands "+="... yes
- checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
- checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
- checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r
- checking for objdump... objdump
- checking how to recognize dependent libraries... pass_all
- checking for dlltool... no
- checking how to associate runtime and link libraries... printf %s\n
- checking for ar... ar
- checking for archiver @FILE support... @
- checking for strip... strip
- checking for ranlib... ranlib
- checking command to parse /usr/bin/nm -B output from /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc object... ok
- checking for sysroot... no
- checking for mt... mt
- checking if mt is a manifest tool... no
- checking how to run the C preprocessor... /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc -E
- checking for ANSI C header files... yes
- checking for sys/types.h... yes
- checking for sys/stat.h... yes
- checking for stdlib.h... yes
- checking for string.h... yes
- checking for memory.h... yes
- checking for strings.h... yes
- checking for inttypes.h... yes
- checking for stdint.h... yes
- checking for unistd.h... yes
- checking for dlfcn.h... yes
- checking for objdir... .libs
- checking if /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc supports -fno-rtti -fno-exceptions... no
- checking for /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc option to produce PIC... -fPIC -DPIC
- checking if /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc PIC flag -fPIC -DPIC works... yes
- checking if /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc static flag -static works... no
- checking if /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc supports -c -o file.o... yes
- checking if /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc supports -c -o file.o... (cached) yes
- checking whether the /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
- checking whether -lc should be explicitly linked in... no
- checking dynamic linker characteristics... GNU/Linux ld.so
- checking how to hardcode library paths into programs... immediate
- checking whether stripping libraries is possible... yes
- checking if libtool supports shared libraries... yes
- checking whether to build shared libraries... yes
- checking whether to build static libraries... yes
- configure: finding other utilities
- checking for m4... m4
- checking for doxygen... no
- checking for dot... no
- checking for special C compiler options needed for large files... no
- checking for _FILE_OFFSET_BITS value needed for large files... no
- configure: displaying some results
- checking CPPFLAGS...
- checking CC CFLAGS... /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc -I/opt/lib/mpi/mpich-3.1.4-gcc/include -I/opt/lib/hdf5/hdf5-1.8.14-mpich/include
- checking type /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc... /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc is /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
- checking CXX... unset
- checking FC... unset
- checking F90... unset
- checking AR... ar
- checking AR_FLAGS... cru
- checking type ar... ar is /usr/bin/ar
- checking NM... /usr/bin/nm -B
- checking NMFLAGS...
- configure: checking types, headers, and functions
- checking for stdlib.h... (cached) yes
- checking for sys/types.h... (cached) yes
- checking sys/param.h usability... yes
- checking sys/param.h presence... yes
- checking for sys/param.h... yes
- checking for dirent.h that defines DIR... yes
- checking for library containing opendir... none required
- checking for ANSI C header files... (cached) yes
- checking for sys/wait.h that is POSIX.1 compatible... yes
- checking whether time.h and sys/time.h may both be included... yes
- checking locale.h usability... yes
- checking locale.h presence... yes
- checking for locale.h... yes
- checking stdio.h usability... yes
- checking stdio.h presence... yes
- checking for stdio.h... yes
- checking stdarg.h usability... yes
- checking stdarg.h presence... yes
- checking for stdarg.h... yes
- checking errno.h usability... yes
- checking errno.h presence... yes
- checking for errno.h... yes
- checking ctype.h usability... yes
- checking ctype.h presence... yes
- checking for ctype.h... yes
- checking fcntl.h usability... yes
- checking fcntl.h presence... yes
- checking for fcntl.h... yes
- checking malloc.h usability... yes
- checking malloc.h presence... yes
- checking for malloc.h... yes
- checking for stdlib.h... (cached) yes
- checking for string.h... (cached) yes
- checking for strings.h... (cached) yes
- checking for unistd.h... (cached) yes
- checking for sys/stat.h... (cached) yes
- checking getopt.h usability... yes
- checking getopt.h presence... yes
- checking for getopt.h... yes
- checking sys/time.h usability... yes
- checking sys/time.h presence... yes
- checking for sys/time.h... yes
- checking for vprintf... yes
- checking for _doprnt... no
- checking sys/resource.h usability... yes
- checking sys/resource.h presence... yes
- checking for sys/resource.h... yes
- checking for stdbool.h that conforms to C99... yes
- checking for _Bool... yes
- checking for strlcat... no
- checking for strerror... yes
- checking for snprintf... yes
- checking for strchr... yes
- checking for strrchr... yes
- checking for strcat... yes
- checking for strcpy... yes
- checking for strdup... yes
- checking for strcasecmp... yes
- checking for strtod... yes
- checking for strtoll... yes
- checking for strtoull... yes
- checking for strstr... yes
- checking for mkstemp... yes
- checking for rand... yes
- checking for memcmp... yes
- checking for getrlimit... yes
- checking for gettimeofday... yes
- checking for fsync... yes
- checking for MPI_Comm_f2c... no
- checking whether in-memory files are enabled... yes
- checking for memmove... yes
- checking for getpagesize... yes
- checking for sysconf... yes
- checking whether mmap is enabled for in-memory files... no
- checking for stdlib.h... (cached) yes
- checking for unistd.h... (cached) yes
- checking for sys/param.h... (cached) yes
- checking for getpagesize... (cached) yes
- checking for working mmap... yes
- checking for mremap... yes
- checking for size_t... yes
- checking for working alloca.h... yes
- checking for alloca... yes
- checking whether isnan is declared... yes
- checking whether isinf is declared... yes
- checking whether isfinite is declared... yes
- checking whether signbit is declared... yes
- checking for struct stat.st_blksize... yes
- checking for IEEE floating point format... yes
- checking for size_t... (cached) yes
- checking for off_t... yes
- checking for ssize_t... yes
- checking for ptrdiff_t... yes
- checking for uchar... no
- checking for longlong... no
- checking whether char is unsigned... no
- checking whether byte ordering is bigendian... no
- checking size of short... 2
- checking size of int... 4
- checking size of long... 8
- checking size of long long... 8
- checking size of float... 4
- checking size of double... 8
- checking size of off_t... 8
- checking size of size_t... 8
- checking for library containing deflate... -lz
- checking for floor in -lm... yes
- checking for dlfcn.h... (cached) yes
- checking for dlopen in -ldl... yes
- checking for library containing H5Fflush... -lhdf5
- checking for library containing H5DSis_scale... -lhdf5_hl
- checking hdf5.h usability... yes
- checking hdf5.h presence... no
- checking for hdf5.h... yes
- checking for H5Pget_fapl_mpiposix... no
- checking for H5Pget_fapl_mpio... yes
- checking for H5Pset_deflate... yes
- checking for H5Z_SZIP... no
- checking whether parallel I/O features are to be included... yes
- checking for unsigned long long int... yes
- checking for long long int... yes
- checking for unsigned long long int... (cached) yes
- checking what to call the output of the ftpbin target... binary-netcdf-4.3.3.1.tar
- checking value of LIBS... -lhdf5_hl -lhdf5 -ldl -lm -lz
- checking If compilation is for use with JNA... no
- configure: generating header files and makefiles
- checking that generated files are newer than configure... done
- configure: creating ./config.status
- config.status: creating Makefile
- config.status: creating nc-config
- config.status: creating netcdf.pc
- config.status: creating libnetcdf.settings
- config.status: creating postinstall.sh
- config.status: creating include/netcdf_meta.h
- config.status: creating include/Makefile
- config.status: creating h5_test/Makefile
- config.status: creating docs/Makefile
- config.status: creating docs/images/Makefile
- config.status: creating libsrc/Makefile
- config.status: creating libsrc4/Makefile
- config.status: creating libsrc5/Makefile
- config.status: creating nctest/Makefile
- config.status: creating nc_test4/Makefile
- config.status: creating nc_test/Makefile
- config.status: creating ncdump/Makefile
- config.status: creating ncgen3/Makefile
- config.status: creating ncgen/Makefile
- config.status: creating examples/Makefile
- config.status: creating examples/C/Makefile
- config.status: creating examples/CDL/Makefile
- config.status: creating oc2/Makefile
- config.status: creating libdap2/Makefile
- config.status: creating libdispatch/Makefile
- config.status: creating liblib/Makefile
- config.status: creating ncdump/cdl/Makefile
- config.status: creating ncdump/expected/Makefile
- config.status: creating ncdap_test/Makefile
- config.status: creating ncdap_test/testdata3/Makefile
- config.status: creating ncdap_test/expected3/Makefile
- config.status: creating ncdap_test/expected4/Makefile
- config.status: creating ncdap_test/expectremote3/Makefile
- config.status: creating ncdap_test/expectremote4/Makefile
- config.status: creating config.h
- config.status: executing depfiles commands
- config.status: executing libtool commands
- # NetCDF C Configuration Summary
- ==============================
- # General
- -------
- NetCDF Version: 4.3.3.1
- Configured On: Thu May 21 01:38:26 EEST 2015
- Host System: x86_64-unknown-linux-gnu
- Build Directory: /root/src/netcdf-4.3.3.1
- Install Prefix: /opt/lib/netcdf/netcdf-4.3.3.1-mpich
- # Compiling Options
- -----------------
- C Compiler: /opt/lib/mpi/mpich-3.1.4-gcc/bin/mpicc
- CFLAGS: -I/opt/lib/mpi/mpich-3.1.4-gcc/include -I/opt/lib/hdf5/hdf5-1.8.14-mpich/include
- CPPFLAGS:
- LDFLAGS: -L/opt/lib/mpi/mpich-3.1.4-gcc/lib -L/opt/lib/hdf5/hdf5-1.8.14-mpich/lib
- AM_CFLAGS:
- AM_CPPFLAGS:
- AM_LDFLAGS:
- Shared Library: yes
- Static Library: yes
- Extra libraries: -lhdf5_hl -lhdf5 -ldl -lm -lz
- # Features
- --------
- NetCDF-2 API: yes
- NetCDF-4 API: yes
- HDF4 Support: no
- HDF5 Support: yes
- PNetCDF Support: no
- Parallel Support: yes
- DAP Support: no
- Diskless Support: yes
- MMap Support: no
- JNA Support: no
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