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Dec 16th, 2014
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  1. CXXLD meep_mpi
  2. ../src/.libs/libmeep_mpi.a(h5file.o): In function `find_dataset':
  3. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:296: undefined reference to `H5Gget_objinfo'
  4. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::get_id()':
  5. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5open'
  6. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5P_CLS_FILE_ACCESS_g'
  7. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5Pcreate'
  8. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5check_version'
  9. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5Fopen'
  10. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:136: undefined reference to `H5Pclose'
  11. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5check_version'
  12. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:134: undefined reference to `H5check_version'
  13. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:134: undefined reference to `H5Fcreate'
  14. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  15. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  16. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  17. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  18. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  19. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  20. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  21. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  22. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  23. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  24. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  25. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  26. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::get_id()':
  27. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5open'
  28. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5P_CLS_FILE_ACCESS_g'
  29. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:118: undefined reference to `H5Pcreate'
  30. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5check_version'
  31. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5Fopen'
  32. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:136: undefined reference to `H5Pclose'
  33. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:132: undefined reference to `H5check_version'
  34. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:134: undefined reference to `H5check_version'
  35. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:134: undefined reference to `H5Fcreate'
  36. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  37. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  38. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  39. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  40. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  41. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  42. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::set_cur(char const*, void*)':
  43. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:236: undefined reference to `H5Dclose'
  44. ../src/.libs/libmeep_mpi.a(h5file.o): In function `dataset_exists':
  45. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eget_auto1'
  46. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  47. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Dopen1'
  48. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  49. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:102: undefined reference to `H5Dclose'
  50. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read_size(char const*, int*, int*, int)':
  51. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:259: undefined reference to `H5Dopen1'
  52. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:262: undefined reference to `H5Dget_space'
  53. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:264: undefined reference to `H5Sget_simple_extent_ndims'
  54. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:269: undefined reference to `H5Sget_simple_extent_dims'
  55. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:273: undefined reference to `H5Sclose'
  56. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read(char const*, int*, int*, int)':
  57. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:345: undefined reference to `H5Dget_space'
  58. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:347: undefined reference to `H5Sget_simple_extent_ndims'
  59. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:352: undefined reference to `H5Sget_simple_extent_dims'
  60. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:357: undefined reference to `H5Sclose'
  61. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:361: undefined reference to `H5open'
  62. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:361: undefined reference to `H5T_NATIVE_DOUBLE_g'
  63. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:361: undefined reference to `H5Dread'
  64. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:364: undefined reference to `H5Dclose'
  65. ../src/.libs/libmeep_mpi.a(h5file.o): In function `dataset_exists':
  66. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eget_auto1'
  67. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  68. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Dopen1'
  69. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  70. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:102: undefined reference to `H5Dclose'
  71. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read(char const*, int*, int*, int)':
  72. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:329: undefined reference to `H5Dopen1'
  73. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:334: undefined reference to `H5Giterate'
  74. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:357: undefined reference to `H5Sclose'
  75. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:341: undefined reference to `H5Dopen1'
  76. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  77. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  78. ../src/.libs/libmeep_mpi.a(h5file.o): In function `dataset_exists':
  79. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eget_auto1'
  80. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  81. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Dopen1'
  82. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  83. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:102: undefined reference to `H5Dclose'
  84. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read(char const*)':
  85. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:403: undefined reference to `H5Dopen1'
  86. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:404: undefined reference to `H5Dget_space'
  87. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:405: undefined reference to `H5Dget_type'
  88. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:407: undefined reference to `H5Sget_simple_extent_npoints'
  89. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:410: undefined reference to `H5Tget_size'
  90. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:411: undefined reference to `H5Tclose'
  91. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:412: undefined reference to `H5open'
  92. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:412: undefined reference to `H5T_C_S1_g'
  93. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:412: undefined reference to `H5Tcopy'
  94. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:413: undefined reference to `H5Tset_size'
  95. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:417: undefined reference to `H5Dread'
  96. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:419: undefined reference to `H5Tclose'
  97. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:420: undefined reference to `H5Sclose'
  98. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:421: undefined reference to `H5Dclose'
  99. ../src/.libs/libmeep_mpi.a(h5file.o): In function `dataset_exists':
  100. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eget_auto1'
  101. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  102. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Dopen1'
  103. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:100: undefined reference to `H5Eset_auto1'
  104. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:102: undefined reference to `H5Dclose'
  105. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::remove_data(char const*)':
  106. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:465: undefined reference to `H5Gunlink'
  107. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:466: undefined reference to `H5Fflush'
  108. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  109. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  110. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  111. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::create_data(char const*, int, int const*, bool, bool)':
  112. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:506: undefined reference to `H5Screate_simple'
  113. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5open'
  114. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5P_CLS_DATASET_CREATE_g'
  115. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5Pcreate'
  116. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:516: undefined reference to `H5Pset_chunk'
  117. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:522: undefined reference to `H5open'
  118. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:522: undefined reference to `H5T_NATIVE_FLOAT_g'
  119. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:524: undefined reference to `H5Dcreate1'
  120. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:527: undefined reference to `H5Pclose'
  121. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:553: undefined reference to `H5Sclose'
  122. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:522: undefined reference to `H5open'
  123. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:522: undefined reference to `H5T_NATIVE_DOUBLE_g'
  124. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:506: undefined reference to `H5Screate_simple'
  125. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5open'
  126. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5P_CLS_DATASET_CREATE_g'
  127. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:511: undefined reference to `H5Pcreate'
  128. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:530: undefined reference to `H5Dopen1'
  129. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:532: undefined reference to `H5Dget_space'
  130. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:534: undefined reference to `H5Sget_simple_extent_ndims'
  131. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:539: undefined reference to `H5Sget_simple_extent_dims'
  132. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::extend_data(char const*, int, int const*)':
  133. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:585: undefined reference to `H5Dget_space'
  134. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:587: undefined reference to `H5Sget_simple_extent_ndims'
  135. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:591: undefined reference to `H5Sget_simple_extent_dims'
  136. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:599: undefined reference to `H5Sclose'
  137. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:604: undefined reference to `H5Dextend'
  138. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:582: undefined reference to `H5Dopen1'
  139. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:591: undefined reference to `H5Sget_simple_extent_dims'
  140. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::write_chunk(int, int const*, int const*, double*)':
  141. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:664: undefined reference to `H5Dget_space'
  142. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:691: undefined reference to `H5Sselect_hyperslab'
  143. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:692: undefined reference to `H5Screate_simple'
  144. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:693: undefined reference to `H5Sselect_all'
  145. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:711: undefined reference to `H5open'
  146. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:711: undefined reference to `H5T_NATIVE_DOUBLE_g'
  147. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:711: undefined reference to `H5Dwrite'
  148. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:713: undefined reference to `H5Sclose'
  149. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:696: undefined reference to `H5Sselect_none'
  150. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:697: undefined reference to `H5Scopy'
  151. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:698: undefined reference to `H5Sselect_none'
  152. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:664: undefined reference to `H5Dget_space'
  153. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  154. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  155. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  156. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  157. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::close_id()':
  158. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:154: undefined reference to `H5Fclose'
  159. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::unset_cur()':
  160. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  161. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:226: undefined reference to `H5Dclose'
  162. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::write(char const*, char const*)':
  163. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:757: undefined reference to `H5open'
  164. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:757: undefined reference to `H5T_C_S1_g'
  165. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:757: undefined reference to `H5Tcopy'
  166. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:758: undefined reference to `H5Tset_size'
  167. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:759: undefined reference to `H5Screate'
  168. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:761: undefined reference to `H5Dcreate1'
  169. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:765: undefined reference to `H5Sclose'
  170. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:766: undefined reference to `H5Tclose'
  171. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:763: undefined reference to `H5Dwrite'
  172. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read_chunk(int, int const*, int const*, double*)':
  173. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:798: undefined reference to `H5Dget_space'
  174. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:821: undefined reference to `H5Sselect_hyperslab'
  175. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:822: undefined reference to `H5Screate_simple'
  176. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:823: undefined reference to `H5Sselect_all'
  177. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:840: undefined reference to `H5open'
  178. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:840: undefined reference to `H5T_NATIVE_DOUBLE_g'
  179. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:840: undefined reference to `H5Dread'
  180. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:842: undefined reference to `H5Sclose'
  181. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:798: undefined reference to `H5Dget_space'
  182. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:826: undefined reference to `H5Sselect_none'
  183. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:827: undefined reference to `H5Scopy'
  184. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:828: undefined reference to `H5Sselect_none'
  185. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::write_chunk(int, int const*, int const*, double*)':
  186. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:714: undefined reference to `H5Sclose'
  187. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::write(char const*, char const*)':
  188. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:767: undefined reference to `H5Dclose'
  189. ../src/.libs/libmeep_mpi.a(h5file.o): In function `meep::h5file::read_chunk(int, int const*, int const*, double*)':
  190. /home/ongun/Downloads/meep-1.2.1/src/h5file.cpp:843: undefined reference to `H5Sclose'
  191. collect2: error: ld returned 1 exit status
  192. make[3]: *** [meep_mpi] Error 1
  193. make[3]: Leaving directory `/home/ongun/Downloads/meep-1.2.1/libctl'
  194. make[2]: *** [all] Error 2
  195. make[2]: Leaving directory `/home/ongun/Downloads/meep-1.2.1/libctl'
  196. make[1]: *** [all-recursive] Error 1
  197. make[1]: Leaving directory `/home/ongun/Downloads/meep-1.2.1'
  198. make: *** [all] Error 2
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