-- The C compiler identification is GNU 4.8.2
-- The CXX compiler identification is GNU 4.8.2
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- The imported target "vtkParseJava" references the file
   "/usr/bin/vtkParseJava"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkWrapJava" references the file
   "/usr/bin/vtkWrapJava"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkCommonJava" references the file
   "/usr/lib/jni/libvtkCommonJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkFilteringJava" references the file
   "/usr/lib/jni/libvtkFilteringJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkImagingJava" references the file
   "/usr/lib/jni/libvtkImagingJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkGraphicsJava" references the file
   "/usr/lib/jni/libvtkGraphicsJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkGenericFilteringJava" references the file
   "/usr/lib/jni/libvtkGenericFilteringJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkIOJava" references the file
   "/usr/lib/jni/libvtkIOJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkRenderingJava" references the file
   "/usr/lib/jni/libvtkRenderingJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkVolumeRenderingJava" references the file
   "/usr/lib/jni/libvtkVolumeRenderingJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkHybridJava" references the file
   "/usr/lib/jni/libvtkHybridJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkWidgetsJava" references the file
   "/usr/lib/jni/libvtkWidgetsJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkParallelJava" references the file
   "/usr/lib/jni/libvtkParallelJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkInfovisJava" references the file
   "/usr/lib/jni/libvtkInfovisJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkGeovisJava" references the file
   "/usr/lib/jni/libvtkGeovisJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkViewsJava" references the file
   "/usr/lib/jni/libvtkViewsJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- The imported target "vtkChartsJava" references the file
   "/usr/lib/jni/libvtkChartsJava.so.5.8.0"
but this file does not exist.  Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
   "/usr/lib/vtk-5.8/VTKTargets.cmake"
but not all the files it references.

-- Found SWIG: /usr/bin/swig (found version "2.0.11")
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    DEBUG


-- Build files have been written to: /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7
/usr/bin/cmake -H/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 -B/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
make -f CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/build.make CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/depend
make[2]: Entering directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
/usr/bin/cmake -E cmake_progress_report /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles 1
[ 50%] Swig source
/usr/bin/cmake -E make_directory /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7
/usr/bin/swig -python -module dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 -shadow -modern -modernargs -fastdispatch -fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack -fastquery -nobuildnone -DDOLFIN_VERSION="1.5.0" -DBOOST_UBLAS_NDEBUG -DDOLFIN_SIZE_T=8 -DDOLFIN_LA_INDEX_SIZE=4 -DHAS_HDF5 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -D_FORTIFY_SOURCE=2 -DHAS_SLEPC -DHAS_PETSC -DENABLE_PETSC_SNES -DHAS_UMFPACK -DHAS_CHOLMOD -DHAS_SCOTCH -DHAS_ZLIB -DHAS_MPI -DHAS_OPENMP -DHAS_QT4 -DHAS_VTK -DHAS_QVTK -DHAS_PETSC4PY -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MINOR=8 -DNUMPY_VERSION_MICRO=2 -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -c++ -fcompact -O -I. -small -outdir /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 -c++ -I/usr/include -I/usr/include/libxml2 -I/usr/include -I/usr/lib/slepcdir/3.4.2 -I/usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/include -I/usr/lib/slepcdir/3.4.2/include -I/usr/include/suitesparse -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/include -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/eigen3 -I/usr/include -I/usr/include -I/usr/lib/petscdir/3.4.2/include -I/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/include -I/usr/include -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/qt4 -I/usr/include/vtk-5.8 -I/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/. -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -I/usr/include/x86_64-linux-gnu/python2.7 -I/usr/lib/pymodules/python2.7/petsc4py/include -I/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 -o /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i
/usr/include/dolfin/la/LinearAlgebraObject.h:36: Warning 520: Derived class 'LinearAlgebraObject' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:63: Warning 402: Base class 'Hierarchical< Function >' is incomplete.
/usr/include/dolfin/swig/function/pre.i:219: Warning 402: Only forward declaration 'Hierarchical< Function >' was found.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::GenericFunction' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'ufc::function' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/Function.h:64: Warning 520: Derived class 'Function' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/usr/include/dolfin/function/FunctionSpace.h:53: Warning 402: Base class 'Hierarchical< FunctionSpace >' is incomplete.
/usr/include/dolfin/swig/function/pre.i:218: Warning 402: Only forward declaration 'Hierarchical< FunctionSpace >' was found.
/usr/include/dolfin/function/FunctionSpace.h:54: Warning 520: Derived class 'FunctionSpace' of 'dolfin::Variable' is not similarly marked as a smart pointer.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:170: Warning 315: Nothing known about 'std::cos'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:171: Warning 315: Nothing known about 'std::sin'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:172: Warning 315: Nothing known about 'std::tan'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:173: Warning 315: Nothing known about 'std::acos'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:174: Warning 315: Nothing known about 'std::asin'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:175: Warning 315: Nothing known about 'std::atan'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:176: Warning 315: Nothing known about 'std::atan2'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:177: Warning 315: Nothing known about 'std::cosh'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:178: Warning 315: Nothing known about 'std::sinh'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:179: Warning 315: Nothing known about 'std::tanh'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:180: Warning 315: Nothing known about 'std::exp'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:181: Warning 315: Nothing known about 'std::frexp'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:182: Warning 315: Nothing known about 'std::ldexp'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:183: Warning 315: Nothing known about 'std::log'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:184: Warning 315: Nothing known about 'std::log10'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:185: Warning 315: Nothing known about 'std::modf'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:186: Warning 315: Nothing known about 'std::pow'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:187: Warning 315: Nothing known about 'std::sqrt'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:188: Warning 315: Nothing known about 'std::ceil'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:189: Warning 315: Nothing known about 'std::fabs'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:190: Warning 315: Nothing known about 'std::floor'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:191: Warning 315: Nothing known about 'std::fmod'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:192: Warning 315: Nothing known about 'std::max'.
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.i:193: Warning 315: Nothing known about 'std::min'.
cd /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7 /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/DependInfo.cmake --color=
Dependee "/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/DependInfo.cmake" is newer than depender "/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/depend.internal".
Dependee "/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/depend.internal".
Scanning dependencies of target _dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7
make[2]: Leaving directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
make -f CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/build.make CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/build
make[2]: Entering directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
/usr/bin/cmake -E cmake_progress_report /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/CMakeFiles 2
[100%] Building CXX object CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx.o
/usr/bin/c++   -DBOOST_UBLAS_NDEBUG -DDOLFIN_LA_INDEX_SIZE=4 -DDOLFIN_SIZE_T=8 -DDOLFIN_VERSION=\"1.5.0\" -DENABLE_PETSC_SNES -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_OPENMP -DHAS_PETSC -DHAS_PETSC4PY -DHAS_QT4 -DHAS_QVTK -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_VTK -DHAS_ZLIB -DNPY_NO_DEPRECATED_API=NPY_1_8_API_VERSION -DNUMPY_VERSION_MAJOR=1 -DNUMPY_VERSION_MICRO=2 -DNUMPY_VERSION_MINOR=8 -D_BSD_SOURCE -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7_EXPORTS -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -std=c++11  -Wno-deprecated   -fopenmp -O2 -fPIC -isystem /usr/include/libxml2 -isystem /usr/lib/slepcdir/3.4.2 -isystem /usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/include -isystem /usr/lib/slepcdir/3.4.2/include -isystem /usr/include/suitesparse -isystem /usr/include/scotch -isystem /usr/lib/openmpi/include -isystem /usr/lib/openmpi/include/openmpi -isystem /usr/include/eigen3 -isystem /usr/lib/petscdir/3.4.2/include -isystem /usr/lib/petscdir/3.4.2/linux-gnu-c-opt/include -isystem /usr/include/qt4 -isystem /usr/include/vtk-5.8 -I/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/. -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -I/usr/include/x86_64-linux-gnu/python2.7 -I/usr/lib/pymodules/python2.7/petsc4py/include -I/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7    -o CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx.o -c /tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx:2962:21: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]
   "in method '" name"', argument "argn" of type '"type"'"
                     ^
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx:2962:39: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]
   "in method '" name"', argument "argn" of type '"type"'"
                                       ^
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx:2964:3: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]
   "invalid null reference "SWIG_ArgFail_Fmt(type, name, argn)
   ^
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx:2966:3: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]
   "in method '"name"', output value of type '"type"'"
   ^
/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx:2966:20: warning: invalid suffix on literal; C++11 requires a space between literal and identifier [-Wliteral-suffix]
   "in method '"name"', output value of type '"type"'"
                    ^
Linking CXX shared module _dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2  -std=c++11  -Wno-deprecated   -fopenmp -O2    -Wl,-Bsymbolic-functions -Wl,-z,relro   -shared -Wl,-soname,_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.so -o _dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.so CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7PYTHON_wrap.cxx.o /usr/lib/x86_64-linux-gnu/libdolfin.so.1.5.0 -lpython2.7 -lxml2 -lboost_filesystem -lboost_program_options -lboost_system -lboost_thread -lboost_iostreams -lpthread -lhdf5 -lpthread -lhdf5 -lz -ldl -lm /usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/lib/libslepc.so /usr/lib/petscdir/3.4.2/linux-gnu-c-opt/lib/libpetsc.so -lumfpack -lamd -lblas -lcholmod -lcamd -lcolamd -lccolamd -Wl,-Bstatic -lsuitesparseconfig -Wl,-Bdynamic -lrt -llapack -lgfortran -lptscotch -lptesmumps -lptscotcherr -lmpi_cxx -lmpi -lz -ldl -lm /usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/lib/libslepc.so /usr/lib/petscdir/3.4.2/linux-gnu-c-opt/lib/libpetsc.so -lumfpack -lamd -lblas -lcholmod -lcamd -lcolamd -lccolamd -Wl,-Bstatic -lsuitesparseconfig -Wl,-Bdynamic -lrt -llapack -lgfortran -lptscotch -lptesmumps -lptscotcherr -lmpi_cxx -lmpi -lhwloc -lQtGui -lQtCore /usr/lib/libvtkGenericFiltering.so.5.8.0 /usr/lib/libvtkGeovis.so.5.8.0 /usr/lib/libvtkCharts.so.5.8.0 /usr/lib/libvtkViews.so.5.8.0 /usr/lib/libvtkInfovis.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkParallel.so.5.8.0 /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkCommon.so.5.8.0 -lm /usr/lib/libvtksys.so.5.8.0 -ldl -lQVTK -Wl,-rpath,/usr/lib/slepcdir/3.4.2/linux-gnu-c-opt/lib:/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/lib
/usr/bin/ld: /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a(SuiteSparse_config.o): relocation R_X86_64_32S against `malloc' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/libsuitesparseconfig.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
make[2]: *** [_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.so] Error 1
make[2]: Leaving directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
make[1]: *** [CMakeFiles/_dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7.dir/all] Error 2
make[1]: Leaving directory `/tmp/tmp0fyQFe2015-6-13-14-02_instant_b4f8d634e8af81993a29ecc98707fb65038e5f8c/dolfin_compile_code_67e0a661c415771b46e54faf4b86add7e5a980c7'
make: *** [all] Error 2