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- bash-4.1$ nextflow run brainstorm/bwa-nextflow-benchmark -with-timeline timeline.html -with-trace -with-dag flowchart.png -profile cluster
- N E X T F L O W ~ version 0.24.0
- Launching `brainstorm/bwa-nextflow-benchmark` [amazing_cori] - revision: 9cc871964a [master]
- Unknown configuration profile: 'cluster'
- bash-4.1$ cat nextflow.config
- manifest {
- homePage = 'http://umccr.github.io'
- description = 'BWA AWS vs NCI test'
- }
- aws {
- region = 'ap-southeast-2'
- }
- standard {
- process.executor = 'local'
- }
- cluster {
- process.executor = 'pbs'
- process.queue = 'normalexpress'
- process.memory = '8GB'
- }
- cloud {
- imageId = 'ami-f3dfdd90'
- instanceType = 't2.small'
- bootStorageSize = '10GB'
- userName = 'ubuntu'
- /* process.executor = 'k8s'
- spotPrice = '1.8'
- */
- }
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