<code proglang="python">
 ( 'runbsub -n 1 -q brc -W 7000 -o std.out -e std.err -N __bsubArgsEnd__ runner cp /gpfs_common/mobyle_share/data/'+str(input_filename1)+'  ref.fasta','runbsub -n 1 -q brc -W 7000 -o std.out -e std.err -N __bsubArgsEnd__ runner cp /gpfs_common/mobyle_share/data/'+str(data_folder_name)+'/'+str(input_filename1)+' ref.fasta',  'runbsub -n 1 -q brc -W 7000 -o std.out -e std.err -N __bsubArgsEnd__ runner cp '+str(infile)+' ref.fasta ','runbsub -n 1 -q brc -W 7000 -o std.out -e std.err -N __bsubArgsEnd__ runner cp /gpfs_common/mobyle_share/mobylePortal-html/v1.0.7/data/jobs/gatk_cohort_workflow2/'+str(JOBID).replace('_','')+'/'+str(FASTA_FILENAME)+ ' ref.fasta')[ int(local_remote_file_switch) ] +' % java -Xmx16g -Djava.io.tmpdir=tmp -jar /home/mobyle/bin/picard-tools-1.88/CreateSequenceDictionary.jar TMP_DIR=tmp R=ref.fasta O=ref.dict '
</code>