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| 1 | # Maintainer: Mike Dacre <mike@dacre.me> | |
| 2 | pkgname=sratoolkit | |
| 3 | pkgver=2.4.4 | |
| 4 | pkgrel=1 | |
| 5 | pkgdesc="A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions" | |
| 6 | arch=('x86_64')
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| 7 | url="http://www.ncbi.nlm.nih.gov/books/NBK47540/" | |
| 8 | license=('custom')
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| 9 | groups=('sequence_analysis')
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| 10 | depends=('bzip2' 'libxml2' 'gcc-libs-multilib' 'fuse' 'curl' 'java-runtime')
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| 11 | source=("http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/$pkgver/sratoolkit.$pkgver-ubuntu64.tar.gz"
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| 12 | "https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE" | |
| 13 | 'sratoolkit') | |
| 14 | ||
| 15 | sha1sums=('2aaa090653e4a129b06bcc189c188c9ea77d5f9d'
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| 16 | '189d29edf32eeec2cf10f5d43b3533207f3f3e87' | |
| 17 | '0a94b50e76a966ee80bd93e55527896df62bddf6') | |
| 18 | ||
| 19 | package() {
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| 20 | install -d ${pkgdir}/usr/bin
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| 21 | install -d ${pkgdir}/usr/share/doc/${pkgname}
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| 22 | install -d ${pkgdir}/usr/share/doc/${pkgname}/example/perl
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| 23 | ||
| 24 | cp -r $srcdir/sratoolkit.$pkgver-ubuntu64/bin/* ${pkgdir}/usr/bin/
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| 25 | #install -Dm755 $srcdir/sratoolkit.$pkgver-ubuntu64/bin/* ${pkgdir}/usr/bin
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| 26 | #install -Dm755 $srcdir/sratoolkit.$pkgver-ubuntu64/bin/ncbi/* ${pkgdir}/usr/bin/ncbi
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| 27 | install -Dm755 $srcdir/sratoolkit.$pkgver-ubuntu64/example/perl/* ${pkgdir}/usr/share/doc/${pkgname}/example/perl/
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| 28 | ||
| 29 | install -Dm644 $srcdir/sratoolkit.$pkgver-ubuntu64/README* ${pkgdir}/usr/share/doc/${pkgname}
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| 30 | ||
| 31 | install -Dm755 $srcdir/sratoolkit ${pkgdir}/usr/bin
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| 32 | install -Dm644 $srcdir/LICENSE ${pkgdir}/usr/share/licenses/${pkgname}
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| 33 | } |
