milk test

# IPython log file

get_ipython().magic(u'pinfo2 %logstart')
import numpy as np
np.__version__
#[Out]# '1.6.2'
import scipy as scp
scp.__version__
#[Out]# '0.11.0'
from milk import tests
tests.run()

EE...............E..............................E.........E.milk/measures/nfoldcrossvalidation.py:69: UserWarning: milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from 15 to 10 (minimum class size).
  warn('milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from %s to %s (minimum class size).' % (nfolds, fmin))
milk/measures/nfoldcrossvalidation.py:69: UserWarning: milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from 20 to 10 (minimum class size).
  warn('milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from %s to %s (minimum class size).' % (nfolds, fmin))
....EE............E....E...EE........./Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/featureselection.py:242: UserWarning: milk.featureselection: No features selected! Using all features as fall-back.
  warnings.warn('milk.featureselection: No features selected! Using all features as fall-back.')
.milk/measures/nfoldcrossvalidation.py:69: UserWarning: milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from 10 to 5 (minimum class size).
  warn('milk.measures.nfoldcrossvalidation: Reducing the nr. of folds from %s to %s (minimum class size).' % (nfolds, fmin))
..E..................EEE.........
======================================================================
ERROR: milk.tests.test_adaboost.test_learner
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Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_adaboost.py", line 6, in test_learner
    learner = milk.supervised.adaboost.boost_learner(milk.supervised.tree.stump_learner())
AttributeError: 'module' object has no attribute 'tree'

======================================================================
ERROR: milk.tests.test_adaboost.test_too_many_boolean_indices_regression
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_adaboost.py", line 29, in test_too_many_boolean_indices_regression
    learner.train(features[::16], labels[::16])
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/multi.py", line 121, in train
    model = self.base.train(features[idxs], (labels[idxs]==i).astype(int), **child_kwargs)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/adaboost.py", line 86, in train
    H,A = _adaboost(features, labels, self.base, self.max_iters)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/adaboost.py", line 37, in _adaboost
    Ht = base.train(features, labels, weights=D)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/randomforest.py", line 96, in train
    tree = milk.supervised.tree.tree_learner(return_label=return_label)
AttributeError: 'module' object has no attribute 'tree'

======================================================================
ERROR: Failure: ImportError (cannot import name gaussianmixture)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/loader.py", line 390, in loadTestsFromName
    addr.filename, addr.module)
  File "/usr/local/lib/python2.7/site-packages/nose/importer.py", line 39, in importFromPath
    return self.importFromDir(dir_path, fqname)
  File "/usr/local/lib/python2.7/site-packages/nose/importer.py", line 86, in importFromDir
    mod = load_module(part_fqname, fh, filename, desc)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_gaussianmixture.py", line 2, in <module>
    from milk.unsupervised import gaussianmixture
ImportError: cannot import name gaussianmixture

======================================================================
ERROR: milk.tests.test_measures.test_confusion_matrix
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_measures.py", line 43, in test_confusion_matrix
    cmat = milk.measures.measures.confusion_matrix(labels0, labels1)
AttributeError: 'module' object has no attribute 'measures'

======================================================================
ERROR: milk.tests.test_multi_view.test_multi_view
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_multi_view.py", line 21, in test_multi_view
    base = milk.supervised.classifier.ctransforms(
AttributeError: 'module' object has no attribute 'classifier'

======================================================================
ERROR: milk.tests.test_nfoldcrossvalidation.test_getfold
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_nfoldcrossvalidation.py", line 67, in test_getfold
    t,s = milk.measures.nfoldcrossvalidation.getfold(A,0,10)
AttributeError: 'module' object has no attribute 'nfoldcrossvalidation'

======================================================================
ERROR: milk.tests.test_nfoldcrossvalidation.test_nfoldcrossvalidation_defaultclassifier
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_nfoldcrossvalidation.py", line 80, in test_nfoldcrossvalidation_defaultclassifier
    cmat,clabels = milk.measures.nfoldcrossvalidation.nfoldcrossvalidation(X,Y)
AttributeError: 'module' object has no attribute 'nfoldcrossvalidation'

======================================================================
ERROR: milk.tests.test_normalise.test_zscore_normalise
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Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_normalise.py", line 31, in test_zscore_normalise
    I=milk.supervised.normalise.zscore_normalise()
AttributeError: 'module' object has no attribute 'normalise'

======================================================================
ERROR: milk.tests.test_normalise.test_interval_normalise
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_normalise.py", line 74, in test_interval_normalise
    interval = milk.supervised.normalise.interval_normalise()
AttributeError: 'module' object has no attribute 'normalise'

======================================================================
ERROR: milk.tests.test_parzen.test_parzen
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_parzen.py", line 24, in test_parzen
    features = milk.supervised.normalise.zscore(features)
AttributeError: 'module' object has no attribute 'normalise'

======================================================================
ERROR: milk.tests.test_pca.test_pca
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_pca.py", line 12, in test_pca
    Xn = milk.unsupervised.normalise.zscore(X)
AttributeError: 'module' object has no attribute 'normalise'

======================================================================
ERROR: milk.tests.test_rf.test_rf
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_rf.py", line 10, in test_rf
    model = learner.train(features[::5], labels[::5])
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/supervised/randomforest.py", line 96, in train
    tree = milk.supervised.tree.tree_learner(return_label=return_label)
AttributeError: 'module' object has no attribute 'tree'

======================================================================
ERROR: milk.tests.test_tree.test_tree
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_tree.py", line 13, in test_tree
    C = milk.supervised.tree.tree_classifier()
AttributeError: 'module' object has no attribute 'tree'

======================================================================
ERROR: milk.tests.test_tree.test_split_subsample
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_tree.py", line 27, in test_split_subsample
    i,s = milk.supervised.tree._split(features[::10], labels[::10], None, milk.supervised.tree.information_gain, 2, random)
AttributeError: 'module' object has no attribute 'tree'

======================================================================
ERROR: milk.tests.test_tree.test_set_entropy
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Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/Users/Shared/Development/Python/milk-0.5-git/build/lib.macosx-10.8-x86_64-2.7/milk/tests/test_tree.py", line 35, in test_set_entropy
    entropy = milk.supervised._tree.set_entropy(labels, counts)
AttributeError: 'module' object has no attribute '_tree'

----------------------------------------------------------------------
Ran 132 tests in 39.908s

FAILED (errors=15)