ID   Reference; SV ; ; ; ; ; 85779 BP.
FH   Key             Location/Qualifiers
FH
FT   tRNA            731..802
FT                   /locus_tag="72506"
FT                   /primary_name="tP(UGG)Q"
FT                   /note="Mitochondrial proline tRNA (tRNA-Pro)"
FT   CDS             3952..4338
FT                   /primary_name="Q0010_CDS"
FT                   /primary_name="Q0010_mRNA"
FT                   /primary_name="Q0010"
FT                   /codon_start=1
FT                   /locus_tag="72508"
FT                   /note="Dubious mitochondrial open reading frame unlikely
FT                   to encode a protein, based on available experimental and
FT                   comparative sequence data; partially overlaps the dubious
FT                   ORF Q0017"
FT   CDS             4254..4415
FT                   /primary_name="Q0017_CDS"
FT                   /primary_name="Q0017_mRNA"
FT                   /primary_name="Q0017"
FT                   /codon_start=1
FT                   /locus_tag="72511"
FT                   /note="Dubious mitochondrial open reading frame unlikely
FT                   to encode a protein, based on available experimental and
FT                   comparative sequence data; partially overlaps the dubious
FT                   ORF Q0010"
FT   rRNA            6546..8194
FT                   /locus_tag="72514"
FT                   /primary_name="15S_rRNA"
FT                   /note="Ribosomal RNA of the small mitochondrial ribosomal
FT                   subunit; MSU1 allele suppresses ochre stop mutations in
FT                   mitochondrial protein-coding genes"
FT                   /gene="15S_RRNA"
FT   tRNA            9374..9447
FT                   /locus_tag="72516"
FT                   /primary_name="tW(UCA)Q"
FT                   /note="Mitochondrial tRNA, annotated as tryptophanyl tRNA
FT                   (tRNA-Trp); predicted by tRNAscan-SE analysis to have
FT                   specificity for selenocysteine"
FT   CDS             11667..11957
FT                   /primary_name="Q0032_CDS"
FT                   /primary_name="Q0032_mRNA"
FT                   /primary_name="Q0032"
FT                   /codon_start=1
FT                   /locus_tag="72518"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data"
FT   CDS             13818..16322
FT                   /primary_name="Q0050_CDS"
FT                   /primary_name="Q0050_mRNA"
FT                   /primary_name="Q0050"
FT                   /codon_start=1
FT                   /note="Reverse transcriptase required for splicing of the
FT                   COX1 pre-mRNA, encoded by a mobile group II intron within
FT                   the mitochondrial COX1 gene"
FT                   /gene="AI1"
FT                   /locus_tag="72521"
FT   CDS             join(13818..13986,16435..18830)
FT                   /codon_start=1
FT                   /primary_name="Q0055_CDS"
FT                   /primary_name="Q0055_mRNA"
FT                   /primary_name="Q0055"
FT                   /note="Reverse transcriptase required for splicing of the
FT                   COX1 pre-mRNA, encoded by a mobile group II intron within
FT                   the mitochondrial COX1 gene"
FT                   /gene="AI2"
FT                   /locus_tag="72524"
FT   CDS             join(13818..13986,16435..16470,18954..19996)
FT                   /codon_start=1
FT                   /primary_name="Q0060_CDS"
FT                   /primary_name="Q0060_mRNA"
FT                   /primary_name="Q0060"
FT                   /note="Endonuclease I-SceIII, encoded by a mobile group I
FT                   intron within the mitochondrial COX1 gene"
FT                   /gene="AI3"
FT                   /locus_tag="72529"
FT   CDS             join(13818..13986,16435..16470,18954..18991,20508..21935)
FT                   /codon_start=1
FT                   /primary_name="Q0065_CDS"
FT                   /primary_name="Q0065_mRNA"
FT                   /primary_name="Q0065"
FT                   /note="Endonuclease I-SceII, encoded by a mobile group I
FT                   intron within the mitochondrial COX1 gene; intron is
FT                   normally spliced by the BI4p maturase but AI4p can mutate
FT                   to acquire the same maturase activity"
FT                   /gene="AI4"
FT                   /locus_tag="72536"
FT   CDS             join(13818..13986,16435..16470,18954..18991,20508..20984,21995..23167)
FT                   /codon_start=1
FT                   /primary_name="Q0070_CDS"
FT                   /primary_name="Q0070_mRNA"
FT                   /primary_name="Q0070"
FT                   /note="Endonuclease I-SceIV, involved in intron mobility;
FT                   encoded by a mobile group I intron within the
FT                   mitochondrial COX1 gene"
FT                   /gene="AI5_ALPHA"
FT                   /locus_tag="72545"
FT   CDS             join(13818..13986,16435..16470,18954..18991,20508..20984,21995..22246,23612..23746,25318..25342,26229..26701)
FT                   /codon_start=1
FT                   /primary_name="Q0045_CDS"
FT                   /primary_name="Q0045_mRNA"
FT                   /primary_name="Q0045"
FT                   /note="Subunit I of cytochrome c oxidase, which is the
FT                   terminal member of the mitochondrial inner membrane
FT                   electron transport chain; one of three
FT                   mitochondrially-encoded subunits"
FT                   /gene="COX1"
FT                   /locus_tag="72557"
FT   intron          13987..16434
FT                   /locus_tag="72527"
FT                   /primary_name="Q0055_intron"
FT   intron          13987..16434
FT                   /locus_tag="72533"
FT                   /primary_name="Q0060_intron"
FT   intron          13987..16434
FT                   /locus_tag="72541"
FT                   /primary_name="Q0065_intron"
FT   intron          13987..16434
FT                   /locus_tag="72551"
FT                   /primary_name="Q0070_intron"
FT   intron          13987..16434
FT                   /locus_tag="72566"
FT                   /primary_name="Q0045_intron"
FT   intron          16471..18953
FT                   /locus_tag="72534"
FT                   /primary_name="Q0060_intron"
FT   intron          16471..18953
FT                   /locus_tag="72542"
FT                   /primary_name="Q0065_intron"
FT   intron          16471..18953
FT                   /locus_tag="72552"
FT                   /primary_name="Q0070_intron"
FT   intron          16471..18953
FT                   /locus_tag="72567"
FT                   /primary_name="Q0045_intron"
FT   intron          18992..20507
FT                   /locus_tag="72543"
FT                   /primary_name="Q0065_intron"
FT   intron          18992..20507
FT                   /locus_tag="72553"
FT                   /primary_name="Q0070_intron"
FT   intron          18992..20507
FT                   /locus_tag="72568"
FT                   /primary_name="Q0045_intron"
FT   intron          20985..21994
FT                   /locus_tag="72554"
FT                   /primary_name="Q0070_intron"
FT   intron          20985..21994
FT                   /locus_tag="72569"
FT                   /primary_name="Q0045_intron"
FT   intron          22247..23611
FT                   /locus_tag="72570"
FT                   /primary_name="Q0045_intron"
FT   intron          23747..25317
FT                   /locus_tag="72571"
FT                   /primary_name="Q0045_intron"
FT   CDS             join(24156..24870,24906..25255)
FT                   /codon_start=1
FT                   /primary_name="Q0075_CDS"
FT                   /primary_name="Q0075_mRNA"
FT                   /primary_name="Q0075"
FT                   /note="Protein of unknown function, encoded within an
FT                   intron of the mitochondrial COX1 gene; translational
FT                   initiation codon is predicted to be ATA rather than ATG"
FT                   /gene="AI5_BETA"
FT                   /locus_tag="72574"
FT   intron          24871..24905
FT                   /locus_tag="72577"
FT                   /primary_name="Q0075_intron"
FT   intron          25343..26228
FT                   /locus_tag="72572"
FT                   /primary_name="Q0045_intron"
FT   CDS             27666..27812
FT                   /primary_name="Q0080_CDS"
FT                   /primary_name="Q0080_mRNA"
FT                   /primary_name="Q0080"
FT                   /codon_start=1
FT                   /note="Subunit 8 of the F0 sector of mitochondrial inner
FT                   membrane F1-F0 ATP synthase, encoded on the mitochondrial
FT                   genome; ATP8 and ATP6 mRNAs are not translated in the
FT                   absence of the F1 sector of ATPase"
FT                   /gene="ATP8"
FT                   /locus_tag="72579"
FT   CDS             28487..29266
FT                   /primary_name="Q0085_CDS"
FT                   /primary_name="Q0085_mRNA"
FT                   /primary_name="Q0085"
FT                   /codon_start=1
FT                   /note="Mitochondrially encoded subunit a of the F0 sector
FT                   of mitochondrial F1F0 ATP synthase; translation is
FT                   specifically activated by Atp22p; ATP6 and ATP8 mRNAs are
FT                   not translated in the absence of the F1 sector of ATPase"
FT                   /gene="ATP6"
FT                   /locus_tag="72582"
FT   CDS             30874..31014
FT                   /primary_name="Q0092_CDS"
FT                   /primary_name="Q0092_mRNA"
FT                   /primary_name="Q0092"
FT                   /codon_start=1
FT                   /locus_tag="72585"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data"
FT   tRNA            35373..35444
FT                   /locus_tag="72588"
FT                   /primary_name="tE(UUC)Q"
FT                   /note="Mitochondrial glutamate tRNA (tRNA-Glu), predicted
FT                   by tRNAscan-SE analysis"
FT   CDS             join(36540..36954,37723..38579)
FT                   /codon_start=1
FT                   /primary_name="Q0110_CDS"
FT                   /primary_name="Q0110_mRNA"
FT                   /primary_name="Q0110"
FT                   /note="Mitochondrial mRNA maturase with a role in
FT                   splicing, encoded by both exon and intron sequences of
FT                   partially processed COB mRNA"
FT                   /gene="BI2"
FT                   /locus_tag="72590"
FT   CDS             join(36540..36954,37723..37736,39141..40265)
FT                   /codon_start=1
FT                   /primary_name="Q0115_CDS"
FT                   /primary_name="Q0115_mRNA"
FT                   /primary_name="Q0115"
FT                   /note="Mitochondrial mRNA maturase, forms a complex with
FT                   Mrs1p to mediate splicing of the bI3 intron of the COB
FT                   gene; encoded by both exon and intron sequences of
FT                   partially processed COB mRNA"
FT                   /gene="BI3"
FT                   /locus_tag="72595"
FT   CDS             join(36540..36954,37723..37736,39141..39217,40841..42251)
FT                   /codon_start=1
FT                   /primary_name="Q0120_CDS"
FT                   /primary_name="Q0120_mRNA"
FT                   /primary_name="Q0120"
FT                   /note="Mitochondrial mRNA maturase, forms a complex with
FT                   Nam2p to mediate splicing of the bI4 intron of the COB
FT                   gene; encoded by both exon and intron sequences of
FT                   partially processed COB mRNA"
FT                   /gene="BI4"
FT                   /locus_tag="72602"
FT   CDS             join(36540..36954,37723..37736,39141..39217,40841..41090,42508..42558,43297..43647)
FT                   /codon_start=1
FT                   /primary_name="Q0105_CDS"
FT                   /primary_name="Q0105_mRNA"
FT                   /primary_name="Q0105"
FT                   /note="Cytochrome b, mitochondrially encoded subunit of
FT                   the ubiquinol-cytochrome c reductase complex which
FT                   includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p,
FT                   Qcr8p, Qcr9p, and Qcr10p"
FT                   /gene="COB"
FT                   /locus_tag="72612"
FT   intron          36955..37722
FT                   /locus_tag="72593"
FT                   /primary_name="Q0110_intron"
FT   intron          36955..37722
FT                   /locus_tag="72599"
FT                   /primary_name="Q0115_intron"
FT   intron          36955..37722
FT                   /locus_tag="72607"
FT                   /primary_name="Q0120_intron"
FT   intron          36955..37722
FT                   /locus_tag="72619"
FT                   /primary_name="Q0105_intron"
FT   intron          37737..39140
FT                   /locus_tag="72600"
FT                   /primary_name="Q0115_intron"
FT   intron          37737..39140
FT                   /locus_tag="72608"
FT                   /primary_name="Q0120_intron"
FT   intron          37737..39140
FT                   /locus_tag="72620"
FT                   /primary_name="Q0105_intron"
FT   intron          39218..40840
FT                   /locus_tag="72609"
FT                   /primary_name="Q0120_intron"
FT   intron          39218..40840
FT                   /locus_tag="72621"
FT                   /primary_name="Q0105_intron"
FT   intron          41091..42507
FT                   /locus_tag="72622"
FT                   /primary_name="Q0105_intron"
FT   intron          42559..43296
FT                   /locus_tag="72623"
FT                   /primary_name="Q0105_intron"
FT   CDS             46723..46953
FT                   /primary_name="Q0130_CDS"
FT                   /primary_name="Q0130_mRNA"
FT                   /primary_name="Q0130"
FT                   /codon_start=1
FT                   /note="F0-ATP synthase subunit c (ATPase-associated
FT                   proteolipid), encoded on the mitochondrial genome;
FT                   mutation confers oligomycin resistance; expression is
FT                   specifically dependent on the nuclear genes AEP1 and AEP2"
FT                   /gene="OLI1"
FT                   /locus_tag="72625"
FT   tRNA            48201..48290
FT                   /locus_tag="72628"
FT                   /primary_name="tS(UGA)Q2"
FT                   /note="Mitochondrial serine tRNA (tRNA-Ser), predicted by
FT                   tRNAscan-SE analysis"
FT   CDS             48901..50097
FT                   /primary_name="Q0140_CDS"
FT                   /primary_name="Q0140_mRNA"
FT                   /primary_name="Q0140"
FT                   /codon_start=1
FT                   /note="Mitochondrial ribosomal protein of the small
FT                   subunit, mitochondrially-encoded; polymorphic in different
FT                   strains due to variation in number of AAT (asparagine)
FT                   codons; translated near the mitochondrial inner membrane"
FT                   /gene="VAR1"
FT                   /locus_tag="72630"
FT   CDS             51052..51228
FT                   /primary_name="Q0142_CDS"
FT                   /primary_name="Q0142_mRNA"
FT                   /primary_name="Q0142"
FT                   /codon_start=1
FT                   /locus_tag="72633"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data; partially overlaps dubious open reading
FT                   frame Q0143"
FT   CDS             51277..51429
FT                   /primary_name="Q0143_CDS"
FT                   /primary_name="Q0143_mRNA"
FT                   /primary_name="Q0143"
FT                   /codon_start=1
FT                   /locus_tag="72636"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data"
FT   CDS             54109..54438
FT                   /primary_name="Q0144_CDS"
FT                   /primary_name="Q0144_mRNA"
FT                   /primary_name="Q0144"
FT                   /codon_start=1
FT                   /locus_tag="72639"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data"
FT   rRNA            58009..62447
FT                   /locus_tag="72642"
FT                   /primary_name="21S_rRNA"
FT                   /note="Mitochondrial 21S rRNA; intron encodes the I-SceI
FT                   DNA endonuclease"
FT                   /gene="21S_RRNA"
FT   intron          60725..61867
FT                   /locus_tag="72643"
FT                   /primary_name="21S_rRNA_intron"
FT   CDS             61022..61729
FT                   /primary_name="Q0160_CDS"
FT                   /primary_name="Q0160_mRNA"
FT                   /primary_name="Q0160"
FT                   /codon_start=1
FT                   /note="I-SceI DNA endonuclease, encoded by the
FT                   mitochondrial group I intron of the 21S_rRNA gene;
FT                   mediates gene conversion that propagates the intron into
FT                   intron-less copies of the 21S_rRNA gene"
FT                   /gene="SCEI"
FT                   /locus_tag="72646"
FT   tRNA            63862..63937
FT                   /locus_tag="72649"
FT                   /primary_name="tT(UGU)Q1"
FT                   /note="Mitochondrial threonine tRNA (tRNA-Thr), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            64415..64490
FT                   /locus_tag="72651"
FT                   /primary_name="tC(GCA)Q"
FT                   /note="Mitochondrial cysteine tRNA (tRNA-Cys)"
FT   tRNA            64596..64670
FT                   /locus_tag="72653"
FT                   /primary_name="tH(GUG)Q"
FT                   /note="Mitochondrial histidine tRNA (tRNA-His), predicted
FT                   by tRNAscan-SE analysis"
FT   CDS             65770..66174
FT                   /primary_name="Q0182_CDS"
FT                   /primary_name="Q0182_mRNA"
FT                   /primary_name="Q0182"
FT                   /codon_start=1
FT                   /locus_tag="72655"
FT                   /note="Dubious open reading frame unlikely to encode a
FT                   protein, based on available experimental and comparative
FT                   sequence data"
FT   tRNA            66095..66179
FT                   /locus_tag="72658"
FT                   /primary_name="tL(UAA)Q"
FT                   /note="Mitochondrial leucine tRNA (tRNA-Leu), predicted by
FT                   tRNAscan-SE analysis; required for mitochondrial
FT                   translation and indirectly for maintenance of the
FT                   mitochondrial genome; mutations in the orthologous human
FT                   gene cause the neurological disease MELAS"
FT   tRNA            66210..66285
FT                   /locus_tag="72660"
FT                   /primary_name="tQ(UUG)Q"
FT                   /note="Mitochondrial glutamine tRNA (tRNA-Gln), predicted
FT                   by tRNAscan-SE analysis; thiolation of uridine at wobble
FT                   position (34) requires Ncs6p"
FT   tRNA            67061..67134
FT                   /locus_tag="72662"
FT                   /primary_name="tK(UUU)Q"
FT                   /note="Mitochondrial lysine tRNA (tRNA-Lys), predicted by
FT                   tRNAscan-SE analysis; modification of wobble base U34 is
FT                   decreased at elevated temperatures, decreasing ability to
FT                   decode AAG codons; this function is performed at high
FT                   temperature by imported cytoplasmic tRNA-Lys with CUU
FT                   anticodon"
FT   tRNA            67309..67381
FT                   /locus_tag="72664"
FT                   /primary_name="tR(UCU)Q1"
FT                   /note="Mitochondrial arginine tRNA (tRNA-Arg), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            67468..67542
FT                   /locus_tag="72666"
FT                   /primary_name="tG(UCC)Q"
FT                   /note="Mitochondrial glycine tRNA (tRNA-Gly), predicted by
FT                   tRNAscan-SE analysis"
FT   tRNA            68322..68396
FT                   /locus_tag="72668"
FT                   /primary_name="tD(GUC)Q"
FT                   /note="Mitochondrial aspartate tRNA (tRNA-Asp), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            69203..69288
FT                   /locus_tag="72670"
FT                   /primary_name="tS(GCU)Q1"
FT                   /note="Mitochondrial serine tRNA (tRNA-Ser), predicted by
FT                   tRNAscan-SE analysis"
FT   tRNA            69289..69362
FT                   /locus_tag="72672"
FT                   /primary_name="tR(ACG)Q2"
FT                   /note="Mitochondrial arginine tRNA (tRNA-Arg), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            69846..69921
FT                   /locus_tag="72674"
FT                   /primary_name="tA(UGC)Q"
FT                   /note="Mitochondrial alanine tRNA (tRNA-Ala), predicted by
FT                   tRNAscan-SE analysis"
FT   tRNA            70162..70237
FT                   /locus_tag="72676"
FT                   /primary_name="tI(GAU)Q"
FT                   /note="Mitochondrial isoleucine tRNA (tRNA-Ile), predicted
FT                   by tRNAscan-SE analysis; mutations in human ortholog are
FT                   linked to conditions such as progressive encephalopathy,
FT                   metabolic syndrome, and hypomagnesaemia"
FT   tRNA            70824..70907
FT                   /locus_tag="72678"
FT                   /primary_name="tY(GUA)Q"
FT                   /note="Mitochondrial tyrosine tRNA (tRNA-Tyr)"
FT   tRNA            71433..71503
FT                   /locus_tag="72680"
FT                   /primary_name="tN(GUU)Q"
FT                   /note="Mitochondrial asparagine tRNA (tRNA-Asn), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            72630..72705
FT                   /locus_tag="72682"
FT                   /primary_name="tM(CAU)Q1"
FT                   /note="Mitochondrial methionine tRNA (tRNA-Met), predicted
FT                   by tRNAscan-SE analysis"
FT   CDS             73758..74513
FT                   /primary_name="Q0250_CDS"
FT                   /primary_name="Q0250_mRNA"
FT                   /primary_name="Q0250"
FT                   /codon_start=1
FT                   /note="Subunit II of cytochrome c oxidase, which is the
FT                   terminal member of the mitochondrial inner membrane
FT                   electron transport chain; one of three
FT                   mitochondrially-encoded subunits"
FT                   /gene="COX2"
FT                   /locus_tag="72685"
FT   CDS             join(74495..75622,75663..75872,75904..75984)
FT                   /codon_start=1
FT                   /primary_name="Q0255_CDS"
FT                   /primary_name="Q0255_mRNA"
FT                   /primary_name="Q0255"
FT                   /locus_tag="72688"
FT                   /note="Maturase-like protein"
FT   intron          75623..75662
FT                   /locus_tag="72692"
FT                   /primary_name="Q0255_intron"
FT   intron          75873..75903
FT                   /locus_tag="72693"
FT                   /primary_name="Q0255_intron"
FT   tRNA            77431..77505
FT                   /locus_tag="72695"
FT                   /primary_name="tF(GAA)Q"
FT                   /note="Mitochondrial phenylalanine tRNA (tRNA-Phe),
FT                   predicted by tRNAscan-SE analysis"
FT   tRNA            complement(78089..78162)
FT                   /locus_tag="72697"
FT                   /primary_name="tT(XXX)Q2"
FT                   /note="Mitochondrial threonine tRNA (tRNA-Thr), predicted
FT                   by tRNAscan-SE analysis"
FT   tRNA            78533..78608
FT                   /locus_tag="72699"
FT                   /primary_name="tV(UAC)Q"
FT                   /note="Mitochondrial valine tRNA (tRNA-Val), predicted by
FT                   tRNAscan-SE analysis"
FT   CDS             79213..80022
FT                   /primary_name="Q0275_CDS"
FT                   /primary_name="Q0275_mRNA"
FT                   /primary_name="Q0275"
FT                   /codon_start=1
FT                   /note="Subunit III of cytochrome c oxidase, which is the
FT                   terminal member of the mitochondrial inner membrane
FT                   electron transport chain; one of three
FT                   mitochondrially-encoded subunits"
FT                   /gene="COX3"
FT                   /locus_tag="72701"
FT   tRNA            85035..85112
FT                   /locus_tag="72704"
FT                   /primary_name="tM(CAU)Q2"
FT                   /note="Mitochondrial formylated methionine tRNA
FT                   (tRNA-fMet); predicted by tRNAscan-SE analysis"
FT   ncRNA           85295..85777
FT                   /locus_tag="72706"
FT                   /primary_name="RPM1"
FT                   /note="RNA component of mitochondrial RNase P, which also
FT                   contains the protein subunit Rpm2p; RNase P removes 5%27
FT                   extensions from mitochondrial tRNA precursors; RPM1 is
FT                   conserved in bacteria, fungi, and protozoa"
FT                   /gene="RPM1"
FT   CDS             85554..85709
FT                   /primary_name="Q0297_CDS"
FT                   /primary_name="Q0297_mRNA"
FT                   /primary_name="Q0297"
FT                   /codon_start=1
FT                   /locus_tag="72708"
FT                   /note="Dubious open reading frame of the mitochondrial
FT                   genome; unlikely to encode a protein, based on available
FT                   experimental and comparative sequence data; partially
FT                   overlaps the verified gene RPM1"
//