pgfSweave-example transcript

R version 2.13.1 (2011-07-08)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

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[Previously saved workspace restored]

> .help.ESS <- help
> options(STERM='iESS', editor='emacsclient')
> require("pgfSweave")
Loading required package: pgfSweave
Loading required package: stashR
Loading required package: filehash
filehash: Simple key-value database (2.2 2011-07-21)
A Set of Tools for Administering SHared Repositories (0.3-4 2011-07-15)
Loading required package: highlight
Loading required package: tools
Loading required package: codetools
Loading required package: parser
Loading required package: Rcpp
Loading required package: optparse
Loading required package: getopt
Loading required package: formatR
tikzDevice: A Device for R Graphics Output in PGF/TikZ Format (v0.6.1)
Checking for a LaTeX compiler...


A working LaTeX compiler was found by checking:
	The PATH using the command pdflatex

Global option tikzLatex set to:
	/usr/texbin/pdflatex

pdfTeX 3.1415926-2.3-1.40.12 (TeX Live 2011)
kpathsea version 6.0.1



A working XeLaTeX compiler was found by checking:
	The PATH using the command xelatex

Global option tikzXelatex set to:
	/usr/texbin/xelatex

XeTeX 3.1415926-2.3-0.9997.5 (TeX Live 2011)
kpathsea version 6.0.1


pgfSweave: Using PGF Version 2.10
> pgfSweave("pgfSweave-example.Rnw")
Writing to file pgfSweave-example.tex
Processing code chunks with options ...
 1 : term verbatim (label=setup)
 2 : echo highlight tidy term verbatim (label=data)
 3 : echo highlight term verbatim tikz external (label=boxplot)
2011-10-13 16:12:09.132 R[97196:613] Can't open input server /Library/InputManagers/Menu Extra Enabler
(Re)Running External Chunk: boxplot
Creating temporary TikZ metrics dictionary at:
	/var/folders/Zz/ZzJ1nC8pHNGtZb-btS+lGU+++Tc/-Tmp-//RtmpnflbLx/tikzMetricsDictionary

You can now run (pdf)latex on 'pgfSweave-example.tex'
Not regenerating makefile for externalization, if your figures have changed, remove pgfSweave-example.makefile and recompile.
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
 restricted \write18 enabled.
entering extended mode
(./pgfSweave-example.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
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(./pgfSweave-example-boxplot.tikz
Opening 'pgfSweave-example.figlist' for writing.
Opening 'pgfSweave-example.makefile' for writing.
Writing 'pgfSweave-example-boxplot' to 'pgfSweave-example.figlist'.
Writing 'pgfSweave-example-boxplot' to 'pgfSweave-example.makefile'.
)
! Missing } inserted.
<inserted text>
                }
l.439 \end{figure}

?
===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to generat
e all images. Then, re-run (pdf)latex pgfSweave-example. =====

! Package tikz Warning: Some images are not up-to-date and need to be generated
.  [1{/usr/local/texlive/2011/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
(./pgfSweave-example.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 )</usr/local/texlive/2011/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pf
b></usr/local/texlive/2011/texmf-dist/fonts/type1/public/amsfonts/cm/cmr10.pfb>
</usr/local/texlive/2011/texmf-dist/fonts/type1/public/amsfonts/cm/cmr12.pfb></
usr/local/texlive/2011/texmf-dist/fonts/type1/public/amsfonts/cm/cmr17.pfb></us
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ocal/texlive/2011/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb>
Output written on pgfSweave-example.pdf (1 page, 73920 bytes).
Transcript written on pgfSweave-example.log.
pdflatex -halt-on-error -interaction=batchmode -jobname "pgfSweave-example-boxplot" "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}"
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
 restricted \write18 enabled.
entering extended mode
make: *** [pgfSweave-example-boxplot.pdf] Error 1
Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) :
  Running 'texi2dvi' on 'pgfSweave-example.tex' failed.
LaTeX errors:
! Package tikz Warning: Some images are not up-to-date and need to be generated
.  [1

{/usr/local/texlive/2011/texmf-var/fonts/map/pdftex/updmap/pdftex.map}]
(./pgfSweave-example.aux)
In addition: Warning message:
'pgfSweave-example.Rnw' has unknown encoding: assuming Latin-1
>