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  1. Windows version
  2.  
  3. Running 64Bit Version
  4.  
  5. mothur v.1.36.1
  6. Last updated: 7/27/2015
  7.  
  8. by
  9. Patrick D. Schloss
  10.  
  11. Department of Microbiology & Immunology
  12. University of Michigan
  13. [email protected]
  14. http://www.mothur.org
  15.  
  16. When using, please cite:
  17. Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
  18.  
  19. Distributed under the GNU General Public License
  20.  
  21. Type 'help()' for information on the commands that are available
  22.  
  23. Type 'quit()' to exit program
  24. Interactive Mode
  25.  
  26.  
  27. mothur >
  28. set.current(list=demo.list, count=demo.count_table)
  29.  
  30. Using 1 processors.
  31.  
  32. Current files saved by mothur:
  33. list=demo.list
  34. count=demo.count_table
  35.  
  36. mothur >
  37. make.shared(list=current, count=current, label=0.01)
  38. Using demo.count_table as input file for the count parameter.
  39. Using demo.list as input file for the list parameter.
  40. 0.01
  41.  
  42. Output File Names:
  43. demo.shared
  44.  
  45.  
  46. mothur >
  47. get.current()
  48.  
  49. Current files saved by mothur:
  50. list=demo.list
  51. shared=demo.shared
  52. count=demo.count_table
  53.  
  54. Current default directory saved by mothur: C:\Users\Richard\Documents\Mothur\mothur\
  55.  
  56. Current working directory: C:\Users\Richard\Desktop\shared test\
  57.  
  58. mothur >
  59. system(rename demo.list demo.2.list)
  60.  
  61.  
  62. mothur >
  63. get.current()
  64.  
  65. Current files saved by mothur:
  66. list=demo.list
  67. shared=demo.shared
  68. count=demo.count_table
  69.  
  70. Current default directory saved by mothur: C:\Users\Richard\Documents\Mothur\mothur\
  71.  
  72. Current working directory: C:\Users\Richard\Desktop\shared test\
  73.  
  74. mothur >
  75. make.shared(list=current, count=current, label=0.01)
  76. Using demo.count_table as input file for the count parameter.
  77. Using demo.list as input file for the list parameter.
  78. Unable to open demo.list. Trying default C:\Users\Richard\Documents\Mothur\mothur\demo.list
  79. Unable to open C:\Users\Richard\Documents\Mothur\mothur\demo.list
  80. Using demo.list as input file for the list parameter.
  81. [ERROR]: did not complete make.shared.
  82.  
  83. mothur >
  84. quit()
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