ffmpeg -i "title03.mkv" -map 0
:v -map 0:a:1 -map 0:s -vf scale=640:480 -filter_complex "[0:v] [0:s]overlay[v]"
 -c:v libx264 -b:v 1M -c:a copy -threads 4 "InuYasha S01E01.mkv"
ffmpeg version N-69672-g078be09 Copyright (c) 2000-2015 the FFmpeg developers
  built with gcc 4.9.2 (GCC)
  configuration: --enable-gpl --enable-version3 --disable-w32threads --enable-av
isynth --enable-bzlib --enable-fontconfig --enable-frei0r --enable-gnutls --enab
le-iconv --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --
enable-libfreetype --enable-libgme --enable-libgsm --enable-libilbc --enable-lib
modplug --enable-libmp3lame --enable-libopencore-amrnb --enable-libopencore-amrw
b --enable-libopenjpeg --enable-libopus --enable-librtmp --enable-libschroedinge
r --enable-libsoxr --enable-libspeex --enable-libtheora --enable-libtwolame --en
able-libvidstab --enable-libvo-aacenc --enable-libvo-amrwbenc --enable-libvorbis
 --enable-libvpx --enable-libwavpack --enable-libwebp --enable-libx264 --enable-
libx265 --enable-libxavs --enable-libxvid --enable-lzma --enable-decklink --enab
le-zlib
  libavutil      54. 18.100 / 54. 18.100
  libavcodec     56. 21.102 / 56. 21.102
  libavformat    56. 19.100 / 56. 19.100
  libavdevice    56.  4.100 / 56.  4.100
  libavfilter     5.  9.104 /  5.  9.104
  libswscale      3.  1.101 /  3.  1.101
  libswresample   1.  1.100 /  1.  1.100
  libpostproc    53.  3.100 / 53.  3.100
Input #0, matroska,webm, from 'title03.mkv':
  Metadata:
    encoder         : libmakemkv v1.9.1 (1.3.0/1.4.1) win(x64-release)
    creation_time   : 2015-02-11 04:30:08
  Duration: 00:24:15.19, start: 0.000000, bitrate: 6555 kb/s
    Chapter #0:0: start 0.000000, end 95.428667
    Metadata:
      title           : Chapter 01
    Chapter #0:1: start 95.428667, end 908.307400
    Metadata:
      title           : Chapter 02
    Chapter #0:2: start 908.307400, end 1329.928600
    Metadata:
      title           : Chapter 03
    Chapter #0:3: start 1329.928600, end 1425.357267
    Metadata:
      title           : Chapter 04
    Chapter #0:4: start 1425.357267, end 1455.187067
    Metadata:
      title           : Chapter 05
    Stream #0:0(eng): Video: mpeg2video (Main), yuv420p(tv, smpte170m), 720x480
[SAR 8:9 DAR 4:3], max. 8500 kb/s, 29.97 fps, 29.97 tbr, 1k tbn, 59.94 tbc
    Stream #0:1(eng): Audio: ac3, 48000 Hz, stereo, fltp, 224 kb/s (default)
    Metadata:
      title           : Stereo
    Stream #0:2(jpn): Audio: ac3, 48000 Hz, stereo, fltp, 224 kb/s
    Metadata:
      title           : Stereo
    Stream #0:3(eng): Subtitle: dvd_subtitle, 720x480 (default)
File 'InuYasha S01E01.mkv' already exists. Overwrite ? [y/N] y
Output pad "default" with type video of the filter instance "Parsed_overlay_0" o
f overlay not connected to any destination