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  1. dConstructorAccessor4.newInstance(Unknown Source)
  2. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
  3. at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
  4. at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
  5. at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
  6. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:341)
  7. at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2137)
  8. ... 32 more
  9. Caused by: java.net.ConnectException: Connection refused
  10. at java.net.PlainSocketImpl.socketConnect(Native Method)
  11. at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
  12. at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
  13. at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
  14. at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
  15. at java.net.Socket.connect(Socket.java:529)
  16. at java.net.Socket.connect(Socket.java:478)
  17. at java.net.Socket.<init>(Socket.java:375)
  18. at java.net.Socket.<init>(Socket.java:218)
  19. at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
  20. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:290)
  21. ... 33 more
  22. [/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld][--no-defaults][--port=3316][--collation-server=utf8_general_ci][--max_allowed_packet=96M][--character-set-server=utf8][--socket=mysql.sock][--basedir=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database][--datadir=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/data][--pid-file=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/data/MysqldResource.pid]
  23. [MysqldResource] launching mysqld (driver_launched_mysqld_2)
  24. Exception in thread "driver_launched_mysqld_2" com.mysql.management.util.WrappedException: java.io.IOException: Cannot run program "/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld": java.io.IOException: error=13, Permission denied
  25. at com.mysql.management.util.Exceptions.toRuntime(Exceptions.java:55)
  26. at com.mysql.management.util.Exceptions$Block.exec(Exceptions.java:89)
  27. at com.mysql.management.util.RuntimeI$Default.exec(RuntimeI.java:180)
  28. at com.mysql.management.util.Shell$Default.run(Shell.java:140)
  29. at java.lang.Thread.run(Thread.java:662)
  30. Caused by: java.io.IOException: Cannot run program "/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld": java.io.IOException: error=13, Permission denied
  31. at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
  32. at java.lang.Runtime.exec(Runtime.java:593)
  33. at com.mysql.management.util.RuntimeI$Default$1.inner(RuntimeI.java:177)
  34. at com.mysql.management.util.Exceptions$Block.exec(Exceptions.java:86)
  35. ... 3 more
  36. Caused by: java.io.IOException: java.io.IOException: error=13, Permission denied
  37. at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
  38. at java.lang.ProcessImpl.start(ProcessImpl.java:65)
  39. at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
  40. ... 6 more
  41. [MysqldResource]
  42. [MysqldResource] mysqld pid-file not found: /media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/data/MysqldResource.pid
  43. SQL: null
  44. ErrorCode: 0
  45. com.mysql.management.util.SQLRuntimeException: User initialization error. Can not connect as openmrs with password. Can not connect as root without password. URL: jdbc:mysql://127.0.0.1:3316/mysql
  46. at com.mysql.management.util.InitializeUser.initializeUser(InitializeUser.java:70)
  47. at com.mysql.management.MysqldResource.start(MysqldResource.java:223)
  48. at com.mysql.management.MysqldResource.start(MysqldResource.java:168)
  49. at com.mysql.management.driverlaunched.ServerLauncherSocketFactory.ensureMysqlStarted(ServerLauncherSocketFactory.java:145)
  50. at com.mysql.management.driverlaunched.ServerLauncherSocketFactory.connect(ServerLauncherSocketFactory.java:72)
  51. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:290)
  52. at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2288)
  53. at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:773)
  54. at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
  55. at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
  56. at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
  57. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
  58. at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
  59. at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
  60. at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:352)
  61. at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
  62. at java.sql.DriverManager.getConnection(DriverManager.java:582)
  63. at java.sql.DriverManager.getConnection(DriverManager.java:185)
  64. at org.openmrs.standalone.StandaloneUtil.startupDatabaseToCreateDefaultUser(StandaloneUtil.java:422)
  65. at org.openmrs.standalone.ApplicationController.init(ApplicationController.java:234)
  66. at org.openmrs.standalone.ApplicationController.<init>(ApplicationController.java:56)
  67. at org.openmrs.standalone.ApplicationController.main(ApplicationController.java:111)
  68. Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
  69.  
  70. The last packet successfully received from the server was 1,362,738,173,603 milliseconds ago. The last packet sent successfully to the server was 0 milliseconds ago.
  71. at sun.reflect.GeneratedConstructorAccessor4.newInstance(Unknown Source)
  72. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
  73. at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
  74. at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
  75. at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
  76. at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2214)
  77. at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:773)
  78. at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
  79. at sun.reflect.GeneratedConstructorAccessor5.newInstance(Unknown Source)
  80. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
  81. at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
  82. at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
  83. at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:352)
  84. at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
  85. at java.sql.DriverManager.getConnection(DriverManager.java:582)
  86. at java.sql.DriverManager.getConnection(DriverManager.java:185)
  87. at com.mysql.management.util.InitializeUser.initializeUser(InitializeUser.java:64)
  88. ... 21 more
  89. Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure
  90.  
  91. The last packet successfully received from the server was 1,362,738,173,603 milliseconds ago. The last packet sent successfully to the server was 0 milliseconds ago.
  92. at sun.reflect.GeneratedConstructorAccessor4.newInstance(Unknown Source)
  93. at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
  94. at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
  95. at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
  96. at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
  97. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:341)
  98. at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2137)
  99. ... 32 more
  100. Caused by: java.net.ConnectException: Connection refused
  101. at java.net.PlainSocketImpl.socketConnect(Native Method)
  102. at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
  103. at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
  104. at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
  105. at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
  106. at java.net.Socket.connect(Socket.java:529)
  107. at java.net.Socket.connect(Socket.java:478)
  108. at java.net.Socket.<init>(Socket.java:375)
  109. at java.net.Socket.<init>(Socket.java:218)
  110. at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
  111. at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:290)
  112. ... 33 more
  113. [/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld][--no-defaults][--port=3316][--collation-server=utf8_general_ci][--max_allowed_packet=96M][--character-set-server=utf8][--socket=mysql.sock][--basedir=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database][--datadir=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/data][--pid-file=/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/data/MysqldResource.pid]
  114. [MysqldResource] launching mysqld (driver_launched_mysqld_3)
  115. Exception in thread "driver_launched_mysqld_3" com.mysql.management.util.WrappedException: java.io.IOException: Cannot run program "/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld": java.io.IOException: error=13, Permission denied
  116. at com.mysql.management.util.Exceptions.toRuntime(Exceptions.java:55)
  117. at com.mysql.management.util.Exceptions$Block.exec(Exceptions.java:89)
  118. at com.mysql.management.util.RuntimeI$Default.exec(RuntimeI.java:180)
  119. at com.mysql.management.util.Shell$Default.run(Shell.java:140)
  120. at java.lang.Thread.run(Thread.java:662)
  121. Caused by: java.io.IOException: Cannot run program "/media/KJoseph/Projects/openMRS/openmrs-standalone-1.9.1/database/bin/mysqld": java.io.IOException: error=13, Permission denied
  122. at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
  123. at java.lang.Runtime.exec(Runtime.java:593)
  124. at com.mysql.management.util.RuntimeI$Default$1.inner(RuntimeI.java:177)
  125. at com.mysql.management.util.Exceptions$Block.exec(Exceptions.jamysql -u root -pva:86)
  126. ... 3 more
  127. Caused by: java.io.IOException: java.io.IOException: error=13, Permission denied
  128. at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
  129. at java.lang.ProcessImpl.start(ProcessImpl.java:65)
  130. at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
  131. ... 6 more
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