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  1. CLUSTALW Result
  2.  
  3. [clustalw.aln][clustalw.dnd][readme]
  4.  
  5.  
  6.  
  7.  
  8. CLUSTAL 2.1 Multiple Sequence Alignments
  9.  
  10.  
  11. Sequence type explicitly set to DNA
  12. Sequence format is Pearson
  13. Sequence 1: gi|1871572|emb|Y08520.1| 966 bp
  14. Sequence 2: gi|386763159|gb|JN034109.1| 954 bp
  15. Sequence 3: gi|12700650|gb|AY012143.1| 1034 bp
  16. Sequence 4: gi|12700649|gb|AY012142.1| 1039 bp
  17. Sequence 5: gi|418048|gb|L22164.1|TLTMTRG1SA 346 bp
  18. Sequence 6: gi|51034518|gb|AY685881.1| 436 bp
  19. Sequence 7: gi|3273824|gb|AF068557.1| 378 bp
  20. Sequence 8: gi|194395365|gb|EU851884.1| 450 bp
  21. Sequence 9: gi|2231359|gb|U78345.1|PLU78345 1073 bp
  22. Start of Pairwise alignments
  23. Aligning...
  24.  
  25. Sequences (1:2) Aligned. Score: 79
  26. Sequences (1:3) Aligned. Score: 82
  27. Sequences (1:4) Aligned. Score: 82
  28. Sequences (1:5) Aligned. Score: 92
  29. Sequences (1:6) Aligned. Score: 79
  30. Sequences (1:7) Aligned. Score: 88
  31. Sequences (1:8) Aligned. Score: 83
  32. Sequences (1:9) Aligned. Score: 44
  33. Sequences (2:3) Aligned. Score: 79
  34. Sequences (2:4) Aligned. Score: 77
  35. Sequences (2:5) Aligned. Score: 79
  36. Sequences (2:6) Aligned. Score: 85
  37. Sequences (2:7) Aligned. Score: 79
  38. Sequences (2:8) Aligned. Score: 82
  39. Sequences (2:9) Aligned. Score: 40
  40. Sequences (3:4) Aligned. Score: 83
  41. Sequences (3:5) Aligned. Score: 88
  42. Sequences (3:6) Aligned. Score: 81
  43. Sequences (3:7) Aligned. Score: 85
  44. Sequences (3:8) Aligned. Score: 85
  45. Sequences (3:9) Aligned. Score: 45
  46. Sequences (4:5) Aligned. Score: 83
  47. Sequences (4:6) Aligned. Score: 77
  48. Sequences (4:7) Aligned. Score: 84
  49. Sequences (4:8) Aligned. Score: 85
  50. Sequences (4:9) Aligned. Score: 44
  51. Sequences (5:6) Aligned. Score: 50
  52. Sequences (5:7) Aligned. Score: 89
  53. Sequences (5:8) Aligned. Score: 86
  54. Sequences (5:9) Aligned. Score: 88
  55. Sequences (6:7) Aligned. Score: 45
  56. Sequences (6:8) Aligned. Score: 52
  57. Sequences (6:9) Aligned. Score: 36
  58. Sequences (7:8) Aligned. Score: 85
  59. Sequences (7:9) Aligned. Score: 87
  60. Sequences (8:9) Aligned. Score: 75
  61. Guide tree file created: [clustalw.dnd]
  62.  
  63. There are 8 groups
  64. Start of Multiple Alignment
  65.  
  66. Aligning...
  67. Group 1: Sequences: 2 Score:7310
  68. Group 2: Sequences: 3 Score:8625
  69. Group 3: Sequences: 4 Score:10326
  70. Group 4: Sequences: 5 Score:11061
  71. Group 5: Sequences: 6 Score:6099
  72. Group 6: Sequences: 2 Score:6355
  73. Group 7: Sequences: 3 Score:5894
  74. Group 8: Sequences: 9 Score:6106
  75. Alignment Score 91319
  76.  
  77. CLUSTAL-Alignment file created [clustalw.aln]
  78.  
  79. clustalw.aln
  80.  
  81. CLUSTAL 2.1 multiple sequence alignment
  82.  
  83.  
  84. gi|386763159|gb|JN034109.1| AATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATG
  85. gi|51034518|gb|AY685881.1| --------------------------------------------------
  86. gi|12700650|gb|AY012143.1| ---AGGTTTGGTCCCAGCCTTTCTGTTAATTTTTAATAGAATTACACATG
  87. gi|12700649|gb|AY012142.1| ---AGGTTTGGTCCTGGCCTTTCTATTAGTTCTTGGCAGACTTACACATG
  88. gi|1871572|emb|Y08520.1| CAAAGGTTTGGTCCTGGCCTTCCTATTAGCTGCTAACAAGATTACACATG
  89. gi|194395365|gb|EU851884.1| --------------------------------------------------
  90. gi|3273824|gb|AF068557.1| --------------------------------------------------
  91. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  92. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  93.  
  94.  
  95. gi|386763159|gb|JN034109.1| CAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCAC--GATCAA
  96. gi|51034518|gb|AY685881.1| --------------------------------------------------
  97. gi|12700650|gb|AY012143.1| CAAGTATCCACACCCCAGTGAGAACGCCCTCTAAATCACCCA--GATCAA
  98. gi|12700649|gb|AY012142.1| CAAGCATCCGCATCCCAGTGAGAATGCCCTCCAAATCATTAAA-GACTAA
  99. gi|1871572|emb|Y08520.1| TAAGTCTCCGCGCCCCAGTGAAAATGCCCTTTGGATCTTAAAGCGGTTCG
  100. gi|194395365|gb|EU851884.1| --------------------------------------------------
  101. gi|3273824|gb|AF068557.1| --------------------------------------------------
  102. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  103. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  104.  
  105.  
  106. gi|386763159|gb|JN034109.1| AAGGAACAAGCATCAAGCACGCAG---CAATGCAGCTCAAAACGCTTAGC
  107. gi|51034518|gb|AY685881.1| --------------------------------------------------
  108. gi|12700650|gb|AY012143.1| AAGGAGCGGGTATCAAGCACACCATA-CACCGTAGCTCAAAACGCCCTGC
  109. gi|12700649|gb|AY012142.1| AAGGAGCGGGCATCAAGCACACTTAT-ACTAGTAGCTCATAACGCCTTGC
  110. gi|1871572|emb|Y08520.1| AAGGAGCGGGCATCAAGCACACCTCTCCCCGGTAGCTTATAACGCCTTGC
  111. gi|194395365|gb|EU851884.1| --------------------------------------------------
  112. gi|3273824|gb|AF068557.1| --------------------------------------------------
  113. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  114. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  115.  
  116.  
  117. gi|386763159|gb|JN034109.1| CTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAAAC
  118. gi|51034518|gb|AY685881.1| --------------------------------------------------
  119. gi|12700650|gb|AY012143.1| TCAGCCACACCCCCACGGGAAACAGCAGTGACCAAAATTAAGCCATGAAC
  120. gi|12700649|gb|AY012142.1| TTAGCCACACCCCCACGGGATACAGCAGTGACAAGAATTAGGCTATGAAC
  121. gi|1871572|emb|Y08520.1| TTAGCCACACCCCCACGGGATACAGCAGTGATAAAAATTAAGCTATGAAC
  122. gi|194395365|gb|EU851884.1| --------------------------------------------------
  123. gi|3273824|gb|AF068557.1| --------------------------------------------------
  124. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  125. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  126.  
  127.  
  128. gi|386763159|gb|JN034109.1| GAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCA
  129. gi|51034518|gb|AY685881.1| -----------------------------------------------CCA
  130. gi|12700650|gb|AY012143.1| GAAAGTTTGACTAAGCCATATTAAC--CAGAGTTGGTAAATCTCGTGCCA
  131. gi|12700649|gb|AY012142.1| GAAAGTTTGACCTAGCCATGCTAAT--TAGGGTTGGTAAATTTCGTGCCA
  132. gi|1871572|emb|Y08520.1| GAAAGTTTGACTAAGCTATGTTGATCAAAGGGTTGGTTAATTTCGTGCCA
  133. gi|194395365|gb|EU851884.1| --------------------------------------------------
  134. gi|3273824|gb|AF068557.1| --------------------------------------------------
  135. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  136. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  137.  
  138.  
  139. gi|386763159|gb|JN034109.1| GCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGC-CGGCGTAAAG
  140. gi|51034518|gb|AY685881.1| GCCACCGCGGTTACACGATTAACCCAAGCTAATAGAGAT-CGGCGTAGAG
  141. gi|12700650|gb|AY012143.1| GCCACCGCGGTCAAACGATTGACTCAAACTAACAGAAATACGGCGTAAAG
  142. gi|12700649|gb|AY012142.1| GCCACCGCGGTCATACGATTGACCCAAACTAATAGACACCCGGCGTAAAG
  143. gi|1871572|emb|Y08520.1| GCCACCGCGGTTATACGATTGACCCAAGTTAATAGGCCCACGGCGTAAAG
  144. gi|194395365|gb|EU851884.1| --------------------------------------------------
  145. gi|3273824|gb|AF068557.1| --------------------------------------------------
  146. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  147. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  148.  
  149.  
  150. gi|386763159|gb|JN034109.1| AGTGTTTTAGATCA-CCCCATCCCCAATAAAGCTAAAACTCACCTGAGTT
  151. gi|51034518|gb|AY685881.1| GGTGTTTAAGATC--TAACAT----AATAAAGCTAAACTCCACCTAAACT
  152. gi|12700650|gb|AY012143.1| CGTGTTAAAGAAT--TAAAAGTACAAATAAAGTTAAATTCTAACTAAACT
  153. gi|12700649|gb|AY012142.1| AGTGTCAAAGAAC---AATATAA-AAATAAAGTCAAACCTTAATTAAGCT
  154. gi|1871572|emb|Y08520.1| CGTGTGAAAGAAAAATTTTTTCCCCACTAAAGTTAAAGTTTAACCAAGCT
  155. gi|194395365|gb|EU851884.1| --------------------------------------------------
  156. gi|3273824|gb|AF068557.1| --------------------------------------------------
  157. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  158. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  159.  
  160.  
  161. gi|386763159|gb|JN034109.1| GTAAAAAACTCCAGTTGACACAAAA-TAGACTACGAAAGTGGCTTTAACA
  162. gi|51034518|gb|AY685881.1| GTAAAA--CCCTAGCTAATGTAAAA-TAAACTACGAAAGTGGCTTTAAAG
  163. gi|12700650|gb|AY012143.1| GTAAAAAGCCCTAACTAGAATAAAAATCTACTACAAAAGTGACTTTAACA
  164. gi|12700649|gb|AY012142.1| GTAAAAAGCCATAATTAAAATTAAGTTAAACTACGAAAGTAACTTTACCA
  165. gi|1871572|emb|Y08520.1| GTAAAAAGCTATCGGTAACACTAAAATAAACTACGAAAGTGACTTTAATA
  166. gi|194395365|gb|EU851884.1| --------------------------------------------------
  167. gi|3273824|gb|AF068557.1| --------------------------------------------------
  168. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  169. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  170.  
  171.  
  172. gi|386763159|gb|JN034109.1| TAT-CTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCAC
  173. gi|51034518|gb|AY685881.1| CTT-CTGAACACACAATAGCCAAGACCCAAACTGGGATTAGACACCCCAC
  174. gi|12700650|gb|AY012143.1| ATA-CTGACCACACGATAGCTAAGACCCAAACTGGGATTAGATACCCCAC
  175. gi|12700649|gb|AY012142.1| TAAACTGAATACACGACAACTAAGACCCAAACTGGGATTAGATACCCCAC
  176. gi|1871572|emb|Y08520.1| CTC-TCAACCACACGACAGCTAAGATCCAAACTGGGATTAGATACCCCAC
  177. gi|194395365|gb|EU851884.1| ----------------------------AAACTGGGATTAGATACCCCAC
  178. gi|3273824|gb|AF068557.1| --------------------------------------------------
  179. gi|2231359|gb|U78345.1|PLU7834 --------------------------------------------------
  180. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  181.  
  182.  
  183. gi|386763159|gb|JN034109.1| TATGCTTAGCCCTAAACCTCAACAG-TTAAATCAACAAAACTGCTCGCCA
  184. gi|51034518|gb|AY685881.1| TATGCTTGGCCCTAAACCTCAGTAG-TTAGAT-AACAAAACTACTCGCCA
  185. gi|12700650|gb|AY012143.1| TATGCTTAGCCCTAAACACAGATAA-TTCCAAAAACAAAACTATTCGCCA
  186. gi|12700649|gb|AY012142.1| TATGCTTAGTCGTAAACTTAAATAA-TCCTGA-AACAAGATTATTCGCCA
  187. gi|1871572|emb|Y08520.1| TATGCTTAGCCTTAAACATAAGTAA-TTTATTAAACAAAATTATTCGCCG
  188. gi|194395365|gb|EU851884.1| TATGCTTAGCCCTAAACTAAAATAGCTTACCACAACAAAGCTATTCGCCA
  189. gi|3273824|gb|AF068557.1| ----GCTCAGCCTTAAACATAGATAACTCACAGAACAAAACTATCTGCCA
  190. gi|2231359|gb|U78345.1|PLU7834 ------------------------AATTAACATAACAAAATTATTTGCCA
  191. gi|418048|gb|L22164.1|TLTMTRG1 --------------------AGATAATTTACCAAACAAAATTATTCGCCA
  192. ***** * ***
  193.  
  194. gi|386763159|gb|JN034109.1| GAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCAT
  195. gi|51034518|gb|AY685881.1| GAATACTACAAGCAACAGCTTAAAACTCAAAGGACTTGACGGTGCTTTAC
  196. gi|12700650|gb|AY012143.1| GAGTACTACTAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTCAT
  197. gi|12700649|gb|AY012142.1| GAGTACTATCGGCAACAGCCCAAAACTCAAAGGACTTGGCGGTGCTTCAT
  198. gi|1871572|emb|Y08520.1| GAGAACTACTAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTAA
  199. gi|194395365|gb|EU851884.1| GAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTAC
  200. gi|3273824|gb|AF068557.1| GAGAACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTAT
  201. gi|2231359|gb|U78345.1|PLU7834 GAGAACTACTAGCAACAGCTTAAAACTCAAAGGACTTGGCGGTGCTTTAC
  202. gi|418048|gb|L22164.1|TLTMTRG1 GAGAACTACTAGCAACCGCTTAAAACTCAAAGGACTTGGCGGTGCTTTAA
  203. ** **** ** ** ** ************** ** ******** *
  204.  
  205. gi|386763159|gb|JN034109.1| ATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCA
  206. gi|51034518|gb|AY685881.1| ATCCCCCTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATCCACCCTA
  207. gi|12700650|gb|AY012143.1| ACCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCA
  208. gi|12700649|gb|AY012142.1| ATCCTTCTAGAGGAGCCTGTTCTGTAAACGATAAACCACGATTAACCTCA
  209. gi|1871572|emb|Y08520.1| ACCCCCCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAGACCTCA
  210. gi|194395365|gb|EU851884.1| ATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACCCCGATAAACCCCA
  211. gi|3273824|gb|AF068557.1| ATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCA
  212. gi|2231359|gb|U78345.1|PLU7834 ATCCCTCTAGAGGAGCCTGTTCTATAATCGATAAACCCCGATAAACCTCA
  213. gi|418048|gb|L22164.1|TLTMTRG1 A-CCCCCTAGAGGAGCCTGTTCTATAACCGATAAACCCCGATAAACCTCA
  214. * ** **************** *** ********* **** *** *
  215.  
  216. gi|386763159|gb|JN034109.1| CCACCTCTTGCT----CAGCCTATATACCGCCATCTTCAGCAAACCCTGA
  217. gi|51034518|gb|AY685881.1| CCCTCTCTTGCT----CAGCCTATATACCGCCATCTTCAGCAAACCCTAA
  218. gi|12700650|gb|AY012143.1| CCAACCCTTGCTAATCCAGTCTATATACCGCCATCTCCAGCAAACCCTAA
  219. gi|12700649|gb|AY012142.1| CCAATCCTTGCTACTTCAGTCTATATACCGCCATCTTCAGCAAACCCTAA
  220. gi|1871572|emb|Y08520.1| CCACCTCTTGCTAATCCAGTCTATATACCGCCATCTTCAGCTAACCCTTA
  221. gi|194395365|gb|EU851884.1| CCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAACCCTAA
  222. gi|3273824|gb|AF068557.1| CCACTTCTAGCTAAATCAGTTTATATACCGCCATCTTCAGCAAACCCTTA
  223. gi|2231359|gb|U78345.1|PLU7834 CCATCTCTAGCTAAATCAGTCTATATACCGCCATCTTCAGCAAACCCTTA
  224. gi|418048|gb|L22164.1|TLTMTRG1 CCACCCCTTGCTAATCCAGTCTATATACCGCCATCTTCAGCGAACCCTTA
  225. ** ** *** *** *************** **** ****** *
  226.  
  227. gi|386763159|gb|JN034109.1| TGAAGGCTACAAAGTAAGCGCAAGTACCCACGT---AAAGACGTTAGGTC
  228. gi|51034518|gb|AY685881.1| TGAAGGCCACAAAGTGAGCGCAAACGCCGTCGCCGCAAATACGTTAGGTC
  229. gi|12700650|gb|AY012143.1| AAAGGACTA-AAAGTAAGCTCAACTATTA-CAC-ATAAAGACGTTAGGTC
  230. gi|12700649|gb|AY012142.1| AAAAGGAACGAAAGTAAGCACAACTACCG-CAC-GTAAAAACGTTAGGTC
  231. gi|1871572|emb|Y08520.1| AAAGGAGTA-AAAGTAAGCACAATCATCC-CAC-ATAAAAAAGTTAGGTC
  232. gi|194395365|gb|EU851884.1| ACAAGGTACCGAAGTAAGCACAAATATC--CAACATAAAAACGTTAGGTC
  233. gi|3273824|gb|AF068557.1| AAAGGAAGA-AAAGTAAGCACAATAATAA-TAC-ATAAAAAAGTTAGGTC
  234. gi|2231359|gb|U78345.1|PLU7834 AAAGGAAGA-GCAGTAAGCACAATAATAA-TAC-ATAAAAAAGTTAGGTC
  235. gi|418048|gb|L22164.1|TLTMTRG1 AAAGGAAAA-AAAGTTAGCATAATTATCT-CAC-ATAAAAAAGTTAGGTC
  236. * * *** *** ** *** * ********
  237.  
  238. gi|386763159|gb|JN034109.1| AAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAG
  239. gi|51034518|gb|AY685881.1| --------------------------------------------------
  240. gi|12700650|gb|AY012143.1| AAGGTGTAACCTATGGGCTGGGAAGAAATGGGCTACATTTTCTAGAACAA
  241. gi|12700649|gb|AY012142.1| AAGGTGTAACCTATGGATTGGGAAGAAATGGGCTACATTTTCTATAATAA
  242. gi|1871572|emb|Y08520.1| AAGGTGTAACCCATGGGGTGGGAAGAAATGGGCTACATTTTCTATTCAAG
  243. gi|194395365|gb|EU851884.1| AAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATTTTCTACCCTAA
  244. gi|3273824|gb|AF068557.1| AAGGTGTAACCCATGAAGTGGGAAGAAATGGGCTACATTTTCTAAT---C
  245. gi|2231359|gb|U78345.1|PLU7834 AAGGTGTAACCTATGAGGTGGGAAGAAATGGGCTACATTTTCTAATAAAT
  246. gi|418048|gb|L22164.1|TLTMTRG1 AAGGTGTAACCTATGGGATGGGAAGAAATGGGCTACATTTTCTACT---C
  247.  
  248.  
  249. gi|386763159|gb|JN034109.1| AAAACTA--------------CGATAGCCCTTATGAAACTTAAGGGTCGA
  250. gi|51034518|gb|AY685881.1| --------------------------------------------------
  251. gi|12700650|gb|AY012143.1| GAACACAACCCA---CCCGAACGAAAACTCCTATGAAAGCTAGGAACTAA
  252. gi|12700649|gb|AY012142.1| GAACACCCCTTAAA-CTCACACGAAAGTTTTTATGAAACCTAAAAACTAA
  253. gi|1871572|emb|Y08520.1| AACAACCT------------ACGAAAGTTTTTATGAAA-CTAAAAACTAA
  254. gi|194395365|gb|EU851884.1| GAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAA-CTGGAGACTAA
  255. gi|3273824|gb|AF068557.1| AAGAGCATAC--------TCACGAAAGTTTTTATGAAATTTAAAAACTAA
  256. gi|2231359|gb|U78345.1|PLU7834 AAGAATATATA-------CCACGGAAATTTTTATGAAACT-AAAAATCAA
  257. gi|418048|gb|L22164.1|TLTMTRG1 AAGAACA-GT--------CTACGAAAATTTTTATGAAACT-AAAAACTAA
  258.  
  259.  
  260. gi|386763159|gb|JN034109.1| AGGTGGATTTAGCAGTAAACTAAGAGTAGAGTGCTTAGTTGAACAGGGCC
  261. gi|51034518|gb|AY685881.1| --------------------------------------------------
  262. gi|12700650|gb|AY012143.1| AGGAGGATTTAGTAGTAAATCAAGAGTAGAGTGCTTGATTGAACAAGGCC
  263. gi|12700649|gb|AY012142.1| AGGAGGATTTAGCAGTAAATTAAGAATAGAATGCTTAATTGAATAAGGCC
  264. gi|1871572|emb|Y08520.1| AGGTGGATTTAGCAGTAAACCAAGAATAGAGAGCTTGGTTGAATAGGGCA
  265. gi|194395365|gb|EU851884.1| AGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCC
  266. gi|3273824|gb|AF068557.1| AGATGGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATAG----
  267. gi|2231359|gb|U78345.1|PLU7834 AGGTGGATTTAGTAGTAAATTAAGAATAGAGAGCTTAGTTGGATTGGGCC
  268. gi|418048|gb|L22164.1|TLTMTRG1 AGGTGGATTTAGTAGTAAACTAAGAATAGAGAG-----------------
  269.  
  270.  
  271. gi|386763159|gb|JN034109.1| CTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGG
  272. gi|51034518|gb|AY685881.1| --------------------------------------------------
  273. gi|12700650|gb|AY012143.1| ATGAAGCACGCACACACCGCCCGTCACCCTCCTCAA--ATAACACAAACC
  274. gi|12700649|gb|AY012142.1| ATGAAGCACGCACACACCGCCCGTCACCCTCCTCAAGTGCCATAGCAAAG
  275. gi|1871572|emb|Y08520.1| ATGGAGCATGCACACACCGCCCGTCACCCTCCTCAAGTGGCAC---AAGT
  276. gi|194395365|gb|EU851884.1| ATGAAGCGCGCACACACCGCCCGTCACCCTC-------------------
  277. gi|3273824|gb|AF068557.1| --------------------------------------------------
  278. gi|2231359|gb|U78345.1|PLU7834 ATAAAGCACGCACACACCGCCCGTCACCCTCCTCAA--GCAGTAGTAATT
  279. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  280.  
  281.  
  282. gi|386763159|gb|JN034109.1| ACATTTAACTAAAACCCCTACGCATTTATAT----AGAGGAGACAAGTCG
  283. gi|51034518|gb|AY685881.1| --------------------------------------------------
  284. gi|12700650|gb|AY012143.1| CATAAACATAATAGCTAGACAAAACCAAATG----AGAGGAGACAAGTCG
  285. gi|12700649|gb|AY012142.1| CCCCAGATTGCTAACCCATGCTAAGCAAGCGTACAAGAGGAGACAAGTCG
  286. gi|1871572|emb|Y08520.1| CAAATATAACCTATTGAAATTAAATAAAACG--CAAGAGGAGACAAGTCG
  287. gi|194395365|gb|EU851884.1| --------------------------------------------------
  288. gi|3273824|gb|AF068557.1| --------------------------------------------------
  289. gi|2231359|gb|U78345.1|PLU7834 CAACCACAATATTATTAACGGATAAATTCAATGTAAGAGGAGACAAGTCG
  290. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  291.  
  292.  
  293. gi|386763159|gb|JN034109.1| TAACATGGTAAGTGTACTGGAAAGTGCACTTGGACGAAC-----------
  294. gi|51034518|gb|AY685881.1| --------------------------------------------------
  295. gi|12700650|gb|AY012143.1| TAACAAGGTAAGCATACTGGAAAGTGTGCTTGGACAAATCAAAGCATAGC
  296. gi|12700649|gb|AY012142.1| TAACAAGGTAAGCATACCGGAAGGTGTGCTTGGATAAACAAGATGTAGCT
  297. gi|1871572|emb|Y08520.1| TAACAAGGTAAGCATACTGGAAAGTGTGCTTGGATAAAC-----------
  298. gi|194395365|gb|EU851884.1| --------------------------------------------------
  299. gi|3273824|gb|AF068557.1| --------------------------------------------------
  300. gi|2231359|gb|U78345.1|PLU7834 TAACACGGTAAGCATACTGGAAGGTGTGCTTGGATTAATCAAAGCGTAGC
  301. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  302.  
  303.  
  304. gi|386763159|gb|JN034109.1| --------------------------------------------------
  305. gi|51034518|gb|AY685881.1| --------------------------------------------------
  306. gi|12700650|gb|AY012143.1| TTAGATTTAAAGCATCTAGTTTACACCCAGAAGATTTCACAATAAGTGAA
  307. gi|12700649|gb|AY012142.1| TAAA---CAAAGCATCTAGTTTACACCTAGAAGATTCCACAACTCGTGCA
  308. gi|1871572|emb|Y08520.1| --------------------------------------------------
  309. gi|194395365|gb|EU851884.1| --------------------------------------------------
  310. gi|3273824|gb|AF068557.1| --------------------------------------------------
  311. gi|2231359|gb|U78345.1|PLU7834 TTAA--TTAAAGCATTTGGCTTACACCCAAAAGATTTCACCACCCGTGCC
  312. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  313.  
  314.  
  315. gi|386763159|gb|JN034109.1| --------------------------------------------------
  316. gi|51034518|gb|AY685881.1| --------------------------------------------------
  317. gi|12700650|gb|AY012143.1| TGCCTTGA------------------------------------------
  318. gi|12700649|gb|AY012142.1| CATCTTGA------------------------------------------
  319. gi|1871572|emb|Y08520.1| --------------------------------------------------
  320. gi|194395365|gb|EU851884.1| --------------------------------------------------
  321. gi|3273824|gb|AF068557.1| --------------------------------------------------
  322. gi|2231359|gb|U78345.1|PLU7834 CGCTTTGAGCTAAAACTAGCCCAAACAACAATCAATTGAGACCACTACAC
  323. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  324.  
  325.  
  326. gi|386763159|gb|JN034109.1| --------------------------------------------------
  327. gi|51034518|gb|AY685881.1| --------------------------------------------------
  328. gi|12700650|gb|AY012143.1| --------------------------------------------------
  329. gi|12700649|gb|AY012142.1| --------------------------------------------------
  330. gi|1871572|emb|Y08520.1| --------------------------------------------------
  331. gi|194395365|gb|EU851884.1| --------------------------------------------------
  332. gi|3273824|gb|AF068557.1| --------------------------------------------------
  333. gi|2231359|gb|U78345.1|PLU7834 ACGACAATTAATCCAAAACATTTAGTCATGAAATTAAAGTATAGGAGATA
  334. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  335.  
  336.  
  337. gi|386763159|gb|JN034109.1| --------------------------------------------------
  338. gi|51034518|gb|AY685881.1| --------------------------------------------------
  339. gi|12700650|gb|AY012143.1| --------------------------------------------------
  340. gi|12700649|gb|AY012142.1| --------------------------------------------------
  341. gi|1871572|emb|Y08520.1| --------------------------------------------------
  342. gi|194395365|gb|EU851884.1| --------------------------------------------------
  343. gi|3273824|gb|AF068557.1| --------------------------------------------------
  344. gi|2231359|gb|U78345.1|PLU7834 GAAATTTTTACTTGGAGCTATAGAAAAAGTACCGTAAGGGAATGATGAAA
  345. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  346.  
  347.  
  348. gi|386763159|gb|JN034109.1| --------------------------------------------------
  349. gi|51034518|gb|AY685881.1| --------------------------------------------------
  350. gi|12700650|gb|AY012143.1| --------------------------------------------------
  351. gi|12700649|gb|AY012142.1| --------------------------------------------------
  352. gi|1871572|emb|Y08520.1| --------------------------------------------------
  353. gi|194395365|gb|EU851884.1| --------------------------------------------------
  354. gi|3273824|gb|AF068557.1| --------------------------------------------------
  355. gi|2231359|gb|U78345.1|PLU7834 GATATAATTTAAAGTAAAAAACAGCAAAGATTACCCCTTTTACCTTTTGC
  356. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  357.  
  358.  
  359. gi|386763159|gb|JN034109.1| --------------------------------------------------
  360. gi|51034518|gb|AY685881.1| --------------------------------------------------
  361. gi|12700650|gb|AY012143.1| --------------------------------------------------
  362. gi|12700649|gb|AY012142.1| --------------------------------------------------
  363. gi|1871572|emb|Y08520.1| --------------------------------------------------
  364. gi|194395365|gb|EU851884.1| --------------------------------------------------
  365. gi|3273824|gb|AF068557.1| --------------------------------------------------
  366. gi|2231359|gb|U78345.1|PLU7834 ATAATGAATTAGCTAGACATGACTTAGCAAAGAGAACTTAAGTTAATTAC
  367. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  368.  
  369.  
  370. gi|386763159|gb|JN034109.1| --------------------------------------------------
  371. gi|51034518|gb|AY685881.1| --------------------------------------------------
  372. gi|12700650|gb|AY012143.1| --------------------------------------------------
  373. gi|12700649|gb|AY012142.1| --------------------------------------------------
  374. gi|1871572|emb|Y08520.1| --------------------------------------------------
  375. gi|194395365|gb|EU851884.1| --------------------------------------------------
  376. gi|3273824|gb|AF068557.1| --------------------------------------------------
  377. gi|2231359|gb|U78345.1|PLU7834 CCCGAAACCAGACGAGCTACCTATGAACAATCCACTTGGGGTGAACTCAT
  378. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  379.  
  380.  
  381. gi|386763159|gb|JN034109.1| --------------------------------------------------
  382. gi|51034518|gb|AY685881.1| --------------------------------------------------
  383. gi|12700650|gb|AY012143.1| --------------------------------------------------
  384. gi|12700649|gb|AY012142.1| --------------------------------------------------
  385. gi|1871572|emb|Y08520.1| --------------------------------------------------
  386. gi|194395365|gb|EU851884.1| --------------------------------------------------
  387. gi|3273824|gb|AF068557.1| --------------------------------------------------
  388. gi|2231359|gb|U78345.1|PLU7834 CTATGTTGCAAAATAGTGAGAAGATTCCTAGGTAGAGGTGAAAAGCCTAA
  389. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  390.  
  391.  
  392. gi|386763159|gb|JN034109.1| --------------------------------------------------
  393. gi|51034518|gb|AY685881.1| --------------------------------------------------
  394. gi|12700650|gb|AY012143.1| --------------------------------------------------
  395. gi|12700649|gb|AY012142.1| --------------------------------------------------
  396. gi|1871572|emb|Y08520.1| --------------------------------------------------
  397. gi|194395365|gb|EU851884.1| --------------------------------------------------
  398. gi|3273824|gb|AF068557.1| --------------------------------------------------
  399. gi|2231359|gb|U78345.1|PLU7834 CGAGCCTGGTGATAGCTGGTTGCCCAGAATAGAATTTTAGTTCAATTTTA
  400. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  401.  
  402.  
  403. gi|386763159|gb|JN034109.1| --------------------------------------------------
  404. gi|51034518|gb|AY685881.1| --------------------------------------------------
  405. gi|12700650|gb|AY012143.1| --------------------------------------------------
  406. gi|12700649|gb|AY012142.1| --------------------------------------------------
  407. gi|1871572|emb|Y08520.1| --------------------------------------------------
  408. gi|194395365|gb|EU851884.1| --------------------------------------------------
  409. gi|3273824|gb|AF068557.1| --------------------------------------------------
  410. gi|2231359|gb|U78345.1|PLU7834 AATTTACCTAACAACTTTAAAATTTTAATGTAAATTTAAAATATACTCTA
  411. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  412.  
  413.  
  414. gi|386763159|gb|JN034109.1| --------------------------------------------------
  415. gi|51034518|gb|AY685881.1| --------------------------------------------------
  416. gi|12700650|gb|AY012143.1| --------------------------------------------------
  417. gi|12700649|gb|AY012142.1| --------------------------------------------------
  418. gi|1871572|emb|Y08520.1| --------------------------------------------------
  419. gi|194395365|gb|EU851884.1| --------------------------------------------------
  420. gi|3273824|gb|AF068557.1| --------------------------------------------------
  421. gi|2231359|gb|U78345.1|PLU7834 AAAAGGTACAGCTTTTTAGACAGGGATACAGCCTTACTTAGAGAGTAAAA
  422. gi|418048|gb|L22164.1|TLTMTRG1 --------------------------------------------------
  423.  
  424.  
  425. gi|386763159|gb|JN034109.1| ------------
  426. gi|51034518|gb|AY685881.1| ------------
  427. gi|12700650|gb|AY012143.1| ------------
  428. gi|12700649|gb|AY012142.1| ------------
  429. gi|1871572|emb|Y08520.1| ------------
  430. gi|194395365|gb|EU851884.1| ------------
  431. gi|3273824|gb|AF068557.1| ------------
  432. gi|2231359|gb|U78345.1|PLU7834 CAATACATAAGA
  433. gi|418048|gb|L22164.1|TLTMTRG1 ------------
  434.  
  435. clustalw.dnd
  436.  
  437. (
  438. gi|1871572|emb|Y08520.1|:0.06151,
  439. (
  440. (
  441. (
  442. gi|386763159|gb|JN034109.1|:0.01054,
  443. gi|51034518|gb|AY685881.1|:0.13625)
  444. :0.06822,
  445. gi|12700650|gb|AY012143.1|:0.05233)
  446. :0.02472,
  447. gi|12700649|gb|AY012142.1|:0.07359)
  448. :0.02275,
  449. (
  450. (
  451. gi|418048|gb|L22164.1|TLTMTRG1SA:-0.03337,
  452. (
  453. gi|3273824|gb|AF068557.1|:-0.06529,
  454. gi|2231359|gb|U78345.1|PLU78345:0.19492)
  455. :0.07983)
  456. :0.06856,
  457. gi|194395365|gb|EU851884.1|:0.03953)
  458. :0.04023);
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