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Fiji quit Error console log

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Jan 3rd, 2014
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  1. Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
  2. Jan 3 22:16:29 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  3. Jan 3 22:16:29 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  4. Jan 3 22:16:29 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  5. Jan 3 22:16:29 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  6. [INFO] Created service: org.scijava.log.StderrLogService
  7. [INFO] Created service: org.scijava.thread.DefaultThreadService
  8. [INFO] Created service: org.scijava.event.DefaultEventService
  9. [INFO] Found 481 plugins.
  10. [INFO] Created service: org.scijava.plugin.DefaultPluginService
  11. [INFO] Found 3 applications.
  12. [INFO] Created service: org.scijava.app.DefaultAppService
  13. [INFO] Created service: org.scijava.app.DefaultStatusService
  14. [INFO] Created service: org.scijava.event.DefaultEventHistory
  15. [INFO] Created service: org.scijava.object.DefaultObjectService
  16. [INFO] Created service: imagej.module.DefaultModuleService
  17. [INFO] Created service: imagej.command.DefaultCommandService
  18. [INFO] Created service: imagej.plugins.commands.app.CoreAppEventService
  19. [INFO] Created service: imagej.display.DefaultDisplayService
  20. [INFO] Created service: imagej.data.display.DefaultImageDisplayService
  21. [INFO] Created service: imagej.plugins.commands.restructure.SplitChannelsContextMonitor
  22. [INFO] Created service: imagej.console.DefaultConsoleService
  23. [INFO] Created service: imagej.io.DefaultIOService
  24. [INFO] Created service: imagej.io.DefaultRecentFileService
  25. [INFO] Created service: imagej.menu.DefaultMenuService
  26. [INFO] Created service: imagej.options.DefaultOptionsService
  27. [INFO] Found 3 Platform plugins.
  28. [INFO] Configuring platform: imagej.plugins.platforms.macosx.MacOSXPlatform
  29. [INFO] Configuring platform: imagej.platform.DefaultPlatform
  30. [INFO] Created service: imagej.platform.DefaultPlatformService
  31. [INFO] Found 6 ScriptLanguage plugins.
  32. Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: Invalid service: imagej.script.DefaultScriptService
  33. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:258)
  34. at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:213)
  35. at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:176)
  36. at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:149)
  37. at org.scijava.Context.<init>(Context.java:181)
  38. at org.scijava.Context.<init>(Context.java:123)
  39. at org.scijava.Context.<init>(Context.java:83)
  40. at org.scijava.Context.<init>(Context.java:72)
  41. at ij.IJ.getContext(IJ.java)
  42. at ij.IJ.runPlugIn(IJ.java)
  43. at fiji.Main$1.run(Main.java:116)
  44. at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
  45. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
  46. at java.awt.EventQueue.access$400(EventQueue.java:82)
  47. at java.awt.EventQueue$2.run(EventQueue.java:676)
  48. at java.awt.EventQueue$2.run(EventQueue.java:674)
  49. at java.security.AccessController.doPrivileged(Native Method)
  50. at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
  51. at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
  52. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
  53. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
  54. at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
  55. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
  56. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
  57. at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
  58. Caused by: java.lang.NullPointerException
  59. at imagej.script.AdaptedScriptLanguage.getNames(AdaptedScriptLanguage.java:99)
  60. at imagej.script.ScriptLanguageIndex.checkDuplicate(ScriptLanguageIndex.java:125)
  61. at imagej.script.ScriptLanguageIndex.add(ScriptLanguageIndex.java:65)
  62. at imagej.script.DefaultScriptService.reloadLanguages(DefaultScriptService.java:254)
  63. at imagej.script.DefaultScriptService.initialize(DefaultScriptService.java:242)
  64. at org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:314)
  65. at org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:247)
  66. ... 24 more
  67. Jan 3 22:16:37 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  68. Jan 3 22:16:37 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  69. Jan 3 22:16:37 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  70. Jan 3 22:16:37 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  71. Jan 3 22:16:49 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  72. Jan 3 22:16:49 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  73. Jan 3 22:16:49 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  74. Jan 3 22:16:49 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  75. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  76. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  77. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  78. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  79. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  80. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  81. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  82. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  83. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  84. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  85. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  86. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  87. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  88. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  89. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextGetCTM: invalid context 0x0
  90. Jan 3 22:16:50 orion.home ImageJ-macosx[14837] <Error>: CGContextSetBaseCTM: invalid context 0x0
  91. [ERROR] Cannot create plugin: class='imagej.ui.FilePreprocessor', priority=-9999.0, enabled=true, pluginType=PreprocessorPlugin
  92. java.lang.IllegalArgumentException: Required service is missing: imagej.ui.UIService
  93. at org.scijava.Context.inject(Context.java:254)
  94. at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:241)
  95. at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:229)
  96. at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:220)
  97. at imagej.module.DefaultModuleService.pre(DefaultModuleService.java:275)
  98. at imagej.module.DefaultModuleService.run(DefaultModuleService.java:169)
  99. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:192)
  100. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:176)
  101. at imagej.plugins.commands.app.CoreAppEventService.quit(CoreAppEventService.java:79)
  102. at imagej.platform.DefaultAppEventService.onEvent(DefaultAppEventService.java:108)
  103. at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  104. at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
  105. at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
  106. at java.lang.reflect.Method.invoke(Method.java:597)
  107. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:282)
  108. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:256)
  109. at org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:971)
  110. at org.scijava.event.DefaultEventBus.access$101(DefaultEventBus.java:60)
  111. at org.scijava.event.DefaultEventBus$1.run(DefaultEventBus.java:201)
  112. at org.scijava.thread.DefaultThreadService.invoke(DefaultThreadService.java:95)
  113. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:195)
  114. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:86)
  115. at org.scijava.event.DefaultEventService.publish(DefaultEventService.java:95)
  116. at imagej.plugins.platforms.macosx.MacOSXAppEventDispatcher.handleQuitRequestWith(MacOSXAppEventDispatcher.java:131)
  117. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:387)
  118. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:380)
  119. at com.apple.eawt._AppEventHandler$_AppEventDispatcher$1.run(_AppEventHandler.java:489)
  120. at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
  121. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
  122. at java.awt.EventQueue.access$400(EventQueue.java:82)
  123. at java.awt.EventQueue$2.run(EventQueue.java:676)
  124. at java.awt.EventQueue$2.run(EventQueue.java:674)
  125. at java.security.AccessController.doPrivileged(Native Method)
  126. at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
  127. at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
  128. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
  129. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
  130. at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
  131. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
  132. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
  133. at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
  134. [ERROR] Cannot create plugin: class='imagej.plugins.uis.swing.widget.SwingInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin
  135. java.lang.IllegalArgumentException: Required service is missing: imagej.widget.WidgetService
  136. at org.scijava.Context.inject(Context.java:254)
  137. at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:241)
  138. at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:229)
  139. at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:220)
  140. at imagej.module.DefaultModuleService.pre(DefaultModuleService.java:275)
  141. at imagej.module.DefaultModuleService.run(DefaultModuleService.java:169)
  142. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:192)
  143. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:176)
  144. at imagej.plugins.commands.app.CoreAppEventService.quit(CoreAppEventService.java:79)
  145. at imagej.platform.DefaultAppEventService.onEvent(DefaultAppEventService.java:108)
  146. at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  147. at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
  148. at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
  149. at java.lang.reflect.Method.invoke(Method.java:597)
  150. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:282)
  151. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:256)
  152. at org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:971)
  153. at org.scijava.event.DefaultEventBus.access$101(DefaultEventBus.java:60)
  154. at org.scijava.event.DefaultEventBus$1.run(DefaultEventBus.java:201)
  155. at org.scijava.thread.DefaultThreadService.invoke(DefaultThreadService.java:95)
  156. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:195)
  157. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:86)
  158. at org.scijava.event.DefaultEventService.publish(DefaultEventService.java:95)
  159. at imagej.plugins.platforms.macosx.MacOSXAppEventDispatcher.handleQuitRequestWith(MacOSXAppEventDispatcher.java:131)
  160. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:387)
  161. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:380)
  162. at com.apple.eawt._AppEventHandler$_AppEventDispatcher$1.run(_AppEventHandler.java:489)
  163. at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
  164. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
  165. at java.awt.EventQueue.access$400(EventQueue.java:82)
  166. at java.awt.EventQueue$2.run(EventQueue.java:676)
  167. at java.awt.EventQueue$2.run(EventQueue.java:674)
  168. at java.security.AccessController.doPrivileged(Native Method)
  169. at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
  170. at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
  171. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
  172. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
  173. at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
  174. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
  175. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
  176. at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
  177. [ERROR] Cannot create plugin: class='imagej.plugins.uis.swing.widget.SwingMdiInputHarvester', priority=-10000.0, enabled=true, pluginType=PreprocessorPlugin
  178. java.lang.IllegalArgumentException: Required service is missing: imagej.widget.WidgetService
  179. at org.scijava.Context.inject(Context.java:254)
  180. at org.scijava.plugin.DefaultPluginService.createInstance(DefaultPluginService.java:241)
  181. at org.scijava.plugin.DefaultPluginService.createInstances(DefaultPluginService.java:229)
  182. at org.scijava.plugin.DefaultPluginService.createInstancesOfType(DefaultPluginService.java:220)
  183. at imagej.module.DefaultModuleService.pre(DefaultModuleService.java:275)
  184. at imagej.module.DefaultModuleService.run(DefaultModuleService.java:169)
  185. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:192)
  186. at imagej.command.DefaultCommandService.run(DefaultCommandService.java:176)
  187. at imagej.plugins.commands.app.CoreAppEventService.quit(CoreAppEventService.java:79)
  188. at imagej.platform.DefaultAppEventService.onEvent(DefaultAppEventService.java:108)
  189. at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
  190. at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
  191. at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
  192. at java.lang.reflect.Method.invoke(Method.java:597)
  193. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:282)
  194. at org.scijava.event.DefaultEventService$ProxySubscriber.onEvent(DefaultEventService.java:256)
  195. at org.bushe.swing.event.ThreadSafeEventService.publish(ThreadSafeEventService.java:971)
  196. at org.scijava.event.DefaultEventBus.access$101(DefaultEventBus.java:60)
  197. at org.scijava.event.DefaultEventBus$1.run(DefaultEventBus.java:201)
  198. at org.scijava.thread.DefaultThreadService.invoke(DefaultThreadService.java:95)
  199. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:195)
  200. at org.scijava.event.DefaultEventBus.publishNow(DefaultEventBus.java:86)
  201. at org.scijava.event.DefaultEventService.publish(DefaultEventService.java:95)
  202. at imagej.plugins.platforms.macosx.MacOSXAppEventDispatcher.handleQuitRequestWith(MacOSXAppEventDispatcher.java:131)
  203. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:387)
  204. at com.apple.eawt._AppEventHandler$_QuitDispatcher.performUsing(_AppEventHandler.java:380)
  205. at com.apple.eawt._AppEventHandler$_AppEventDispatcher$1.run(_AppEventHandler.java:489)
  206. at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
  207. at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
  208. at java.awt.EventQueue.access$400(EventQueue.java:82)
  209. at java.awt.EventQueue$2.run(EventQueue.java:676)
  210. at java.awt.EventQueue$2.run(EventQueue.java:674)
  211. at java.security.AccessController.doPrivileged(Native Method)
  212. at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
  213. at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
  214. at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
  215. at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
  216. at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
  217. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
  218. at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
  219. at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
  220. [ERROR] Module threw exception
  221. java.lang.IllegalArgumentException: Required service is missing: imagej.data.display.WindowService
  222. at org.scijava.Context.inject(Context.java:254)
  223. at imagej.command.CommandModule.initialize(CommandModule.java:147)
  224. at imagej.module.process.InitPreprocessor.process(InitPreprocessor.java:65)
  225. at imagej.module.ModuleRunner.preProcess(ModuleRunner.java:109)
  226. at imagej.module.ModuleRunner.run(ModuleRunner.java:161)
  227. at imagej.module.ModuleRunner.call(ModuleRunner.java:131)
  228. at imagej.module.ModuleRunner.call(ModuleRunner.java:70)
  229. at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
  230. at java.util.concurrent.FutureTask.run(FutureTask.java:138)
  231. at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
  232. at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
  233. at java.lang.Thread.run(Thread.java:680)
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