Openmrs log

08-Oct-2015 14:44:10.498 INFO [main] org.apache.coyote.AbstractProtocol.init Ini
tializing ProtocolHandler ["http-nio-8080"]
08-Oct-2015 14:44:10.616 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.
getSharedSelector Using a shared selector for servlet write/read
08-Oct-2015 14:44:10.629 INFO [main] org.apache.coyote.AbstractProtocol.init Ini
tializing ProtocolHandler ["ajp-nio-8009"]
08-Oct-2015 14:44:10.638 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.
getSharedSelector Using a shared selector for servlet write/read
08-Oct-2015 14:44:10.644 INFO [main] org.apache.catalina.startup.Catalina.load I
nitialization processed in 6962 ms
08-Oct-2015 14:44:10.943 INFO [main] org.apache.catalina.core.StandardService.st
artInternal Starting service Catalina
08-Oct-2015 14:44:10.947 INFO [main] org.apache.catalina.core.StandardEngine.sta
rtInternal Starting Servlet Engine: Apache Tomcat/8.0.15
08-Oct-2015 14:44:11.460 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployWAR Deploying web application archive C:\Apache Software Foun
dation\apache-tomcat-8.0.15\webapps\openmrs.war
08-Oct-2015 14:44:11.571 WARNING [localhost-startStop-1] org.apache.catalina.sta
rtup.SetContextPropertiesRule.begin [SetContextPropertiesRule]{Context} Setting
property 'antiJARLocking' to 'true' did not find a matching property.
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2669) |2015-10-08 14:46:11,1
22| Unable to find a runtime properties file at C:\Apache Software Foundation\ap
ache-tomcat-8.0.15\bin\openmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2697) |2015-10-08 14:46:11,1
92| Unable to find properties file: C:\Users\ulrich\Application Data\OpenMRS\ope
nmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimeProperties(2630) |2015-10-08 14:46:11,212| Unable t
o find a runtime properties file. Initial setup is needed. View the webapp to ru
n the setup wizard.
ERROR - UpdateFilterModel.updateChanges(77) |2015-10-08 14:46:17,362| Unable to
get the database changes
java.lang.RuntimeException: Error occurred while trying to get the updates neede
d for the database. Unable to get a connection to the database.  Please check yo
ur openmrs runtime properties file and make sure you have the correct connection
.username and connection.password set
        at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpda
ter.java:637)
        at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpda
ter.java:594)
        at org.openmrs.web.filter.update.UpdateFilterModel.updateChanges(UpdateF
ilterModel.java:69)
        at org.openmrs.web.filter.update.UpdateFilterModel.<init>(UpdateFilterMo
del.java:47)
        at org.openmrs.web.filter.update.UpdateFilter.init(UpdateFilter.java:457
)
        at org.apache.catalina.core.ApplicationFilterConfig.initFilter(Applicati
onFilterConfig.java:279)
        at org.apache.catalina.core.ApplicationFilterConfig.getFilter(Applicatio
nFilterConfig.java:260)
        at org.apache.catalina.core.ApplicationFilterConfig.<init>(ApplicationFi
lterConfig.java:105)
        at org.apache.catalina.core.StandardContext.filterStart(StandardContext.
java:4615)
        at org.apache.catalina.core.StandardContext.startInternal(StandardContex
t.java:5222)
        at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase
.java:725)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:70
1)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:714)

        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:917)

        at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:
1701)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:51
1)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.
java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor
.java:617)
        at java.lang.Thread.run(Thread.java:744)
Caused by: java.lang.Exception: Unable to get a connection to the database.  Ple
ase check your openmrs runtime properties file and make sure you have the correc
t connection.username and connection.password set
        at org.openmrs.util.DatabaseUpdater.getLiquibase(DatabaseUpdater.java:36
9)
        at org.openmrs.util.DatabaseUpdater.getUnrunDatabaseChanges(DatabaseUpda
ter.java:623)
        ... 20 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLNonTransientConnectionException:
 Could not create connection to database server. Attempted reconnect 3 times. Gi
ving up.
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstruct
orAccessorImpl.java:62)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingC
onstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.Util.getInstance(Util.java:386)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:989)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:975)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:920)
        at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:
2395)
        at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2316)
        at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:834)
        at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47)
        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstruct
orAccessorImpl.java:62)
        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingC
onstructorAccessorImpl.java:45)
        at java.lang.reflect.Constructor.newInstance(Constructor.java:408)
        at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
        at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:416)
        at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java
:347)
        at java.sql.DriverManager.getConnection(DriverManager.java:664)
        at java.sql.DriverManager.getConnection(DriverManager.java:247)
        at org.openmrs.util.DatabaseUpdater.getConnection(DatabaseUpdater.java:4
31)
        at org.openmrs.util.DatabaseUpdater.getLiquibase(DatabaseUpdater.java:36
6)
        ... 21 more
Caused by: java.sql.SQLException: Access denied for user 'test'@'localhost' (usi
ng password: YES)
        at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1086)
        at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4237)
        at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4169)
        at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:928)
        at com.mysql.jdbc.MysqlIO.proceedHandshakeWithPluggableAuthentication(My
sqlIO.java:1750)
        at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1290)
        at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2493)
        at com.mysql.jdbc.ConnectionImpl.connectWithRetries(ConnectionImpl.java:
2334)
        ... 35 more
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2669) |2015-10-08 14:46:22,6
65| Unable to find a runtime properties file at C:\Apache Software Foundation\ap
ache-tomcat-8.0.15\bin\openmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2697) |2015-10-08 14:46:22,6
70| Unable to find properties file: C:\Users\ulrich\Application Data\OpenMRS\ope
nmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimeProperties(2630) |2015-10-08 14:46:22,681| Unable t
o find a runtime properties file. Initial setup is needed. View the webapp to ru
n the setup wizard.
08-Oct-2015 14:46:22.755 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployWAR Deployment of web application archive C:\Apache Software
Foundation\apache-tomcat-8.0.15\webapps\openmrs.war has finished in 131,295 ms
08-Oct-2015 14:46:22.762 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployWAR Deploying web application archive C:\Apache Software Foun
dation\apache-tomcat-8.0.15\webapps\WebApplication1.war
08-Oct-2015 14:46:22.888 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployWAR Deployment of web application archive C:\Apache Software
Foundation\apache-tomcat-8.0.15\webapps\WebApplication1.war has finished in 125
ms
08-Oct-2015 14:46:22.900 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deploying web application directory C:\Apache Softw
are Foundation\apache-tomcat-8.0.15\webapps\docs
08-Oct-2015 14:46:22.995 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deployment of web application directory C:\Apache S
oftware Foundation\apache-tomcat-8.0.15\webapps\docs has finished in 95 ms
08-Oct-2015 14:46:22.997 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deploying web application directory C:\Apache Softw
are Foundation\apache-tomcat-8.0.15\webapps\examples
08-Oct-2015 14:46:24.321 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deployment of web application directory C:\Apache S
oftware Foundation\apache-tomcat-8.0.15\webapps\examples has finished in 1,325 m
s
08-Oct-2015 14:46:24.323 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deploying web application directory C:\Apache Softw
are Foundation\apache-tomcat-8.0.15\webapps\host-manager
08-Oct-2015 14:46:24.462 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deployment of web application directory C:\Apache S
oftware Foundation\apache-tomcat-8.0.15\webapps\host-manager has finished in 139
 ms
08-Oct-2015 14:46:24.464 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deploying web application directory C:\Apache Softw
are Foundation\apache-tomcat-8.0.15\webapps\manager
08-Oct-2015 14:46:24.561 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deployment of web application directory C:\Apache S
oftware Foundation\apache-tomcat-8.0.15\webapps\manager has finished in 96 ms
08-Oct-2015 14:46:24.562 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deploying web application directory C:\Apache Softw
are Foundation\apache-tomcat-8.0.15\webapps\ROOT
08-Oct-2015 14:46:24.661 INFO [localhost-startStop-1] org.apache.catalina.startu
p.HostConfig.deployDirectory Deployment of web application directory C:\Apache S
oftware Foundation\apache-tomcat-8.0.15\webapps\ROOT has finished in 98 ms
08-Oct-2015 14:46:24.739 INFO [main] org.apache.coyote.AbstractProtocol.start St
arting ProtocolHandler ["http-nio-8080"]
08-Oct-2015 14:46:24.780 INFO [main] org.apache.coyote.AbstractProtocol.start St
arting ProtocolHandler ["ajp-nio-8009"]
08-Oct-2015 14:46:24.793 INFO [main] org.apache.catalina.startup.Catalina.start
Server startup in 134143 ms
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2669) |2015-10-08 14:48:04,3
38| Unable to find a runtime properties file at C:\Apache Software Foundation\ap
ache-tomcat-8.0.15\bin\openmrs-runtime.properties
WARN - OpenmrsUtil.getRuntimePropertiesFilePathName(2697) |2015-10-08 14:48:04,3
49| Unable to find properties file: C:\Users\ulrich\Application Data\OpenMRS\ope
nmrs-runtime.properties
INFO 10/8/15 2:50 PM:liquibase: Reading from `liquibasechangelog`
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
INFO 10/8/15 2:50 PM:liquibase: Successfully acquired change log lock
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
WARNING 10/8/15 2:50 PM:liquibase: modifyDataType will lose primary key/autoincr
ement/not null settings for mysql.  Use <sql> and re-specify all configuration i
f this is the case
INFO 10/8/15 2:50 PM:liquibase: Reading from `liquibasechangelog`
SEVERE 10/8/15 2:50 PM:liquibase: Change Set liquibase-update-to-latest.xml::201
401101647-TRUNK-4187::wyclif failed.  Error: Migration failed for change set liq
uibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
     Reason:
          liquibase-update-to-latest.xml : For input string: "62        "
:
          Caused By: Precondition Error
liquibase.exception.MigrationFailedException: Migration failed for change set li
quibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
     Reason:
          liquibase-update-to-latest.xml : For input string: "62        "
:
          Caused By: Precondition Error
        at liquibase.changelog.ChangeSet.execute(ChangeSet.java:285)
        at liquibase.changelog.visitor.UpdateVisitor.visit(UpdateVisitor.java:27
)
        at org.openmrs.util.DatabaseUpdater$1OpenmrsUpdateVisitor.visit(Database
Updater.java:200)
        at liquibase.changelog.ChangeLogIterator.run(ChangeLogIterator.java:58)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:229)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:164)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:149)
        at org.openmrs.web.filter.initialization.InitializationFilter$Initializa
tionCompletion$1.run(InitializationFilter.java:1599)
        at java.lang.Thread.run(Thread.java:744)
Caused by: liquibase.exception.PreconditionErrorException: Precondition Error
        at liquibase.precondition.CustomPreconditionWrapper.check(CustomPrecondi
tionWrapper.java:79)
        at liquibase.precondition.core.AndPrecondition.check(AndPrecondition.jav
a:34)
        at liquibase.precondition.core.PreconditionContainer.check(PreconditionC
ontainer.java:199)
        at liquibase.changelog.ChangeSet.execute(ChangeSet.java:249)
        ... 8 more
INFO 10/8/15 2:50 PM:liquibase: Successfully released change log lock
WARN - InitializationFilter$InitializationCompletion$1.run(1605) |2015-10-08 14:
50:17,135| Error while trying to update to the latest database version
org.openmrs.util.DatabaseUpdateException: There was an error while updating the
database to the latest. file: liquibase-update-to-latest.xml. Error: Migration f
ailed for change set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wy
clif:
     Reason:
          liquibase-update-to-latest.xml : For input string: "62        "
:
          Caused By: Precondition Error
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:152)
        at org.openmrs.web.filter.initialization.InitializationFilter$Initializa
tionCompletion$1.run(InitializationFilter.java:1599)
        at java.lang.Thread.run(Thread.java:744)
Caused by: liquibase.exception.MigrationFailedException: Migration failed for ch
ange set liquibase-update-to-latest.xml::201401101647-TRUNK-4187::wyclif:
     Reason:
          liquibase-update-to-latest.xml : For input string: "62        "
:
          Caused By: Precondition Error
        at liquibase.changelog.ChangeSet.execute(ChangeSet.java:285)
        at liquibase.changelog.visitor.UpdateVisitor.visit(UpdateVisitor.java:27
)
        at org.openmrs.util.DatabaseUpdater$1OpenmrsUpdateVisitor.visit(Database
Updater.java:200)
        at liquibase.changelog.ChangeLogIterator.run(ChangeLogIterator.java:58)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:229)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:164)
        at org.openmrs.util.DatabaseUpdater.executeChangelog(DatabaseUpdater.jav
a:149)
        ... 2 more
Caused by: liquibase.exception.PreconditionErrorException: Precondition Error
        at liquibase.precondition.CustomPreconditionWrapper.check(CustomPrecondi
tionWrapper.java:79)
        at liquibase.precondition.core.AndPrecondition.check(AndPrecondition.jav
a:34)
        at liquibase.precondition.core.PreconditionContainer.check(PreconditionC
ontainer.java:199)
        at liquibase.changelog.ChangeSet.execute(ChangeSet.java:249)
        ... 8 more