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Sep 29th, 2016
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  1. > coxph <- coxph(Surv(Time, Event) ~ Treatment + Parasite, data=data)
  2. > summary(coxph)
  3. Call:
  4. coxph(formula = Surv(Time, Event) ~ Treatment + Parasite, data = data)
  5.  
  6. n= 500, number of events= 317
  7.  
  8. coef exp(coef) se(coef) z Pr(>|z|)
  9. Treatment 1.03502 2.81516 0.09443 10.961 < 2e-16 ***
  10. Parasite 0.51782 1.67836 0.11337 4.567 4.94e-06 ***
  11. ---
  12. Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
  13.  
  14. exp(coef) exp(-coef) lower .95 upper .95
  15. Treatment 2.815 0.3552 2.340 3.388
  16. Parasite 1.678 0.5958 1.344 2.096
  17.  
  18. Concordance= 0.691 (se = 0.019 )
  19. Rsquare= 0.227 (max possible= 0.999 )
  20. Likelihood ratio test= 128.6 on 2 df, p=0
  21. Wald test = 139.1 on 2 df, p=0
  22. Score (logrank) test = 151.4 on 2 df, p=0
  23.  
  24. > cox.zph(coxph)
  25. rho chisq p
  26. Treatment 0.211 13.80 2.04e-04
  27. Parasite -0.124 4.75 2.93e-02
  28. GLOBAL NA 18.86 8.02e-05
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