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Shogun install log

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Jan 22nd, 2017
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  1. [noddy@ymmtlab-k80 build]$ cmake -DPythonModular=ON -DCMAKE_INSTALL_PREFIX=/home/noddy/shogun_installation ..
  2. -- The C compiler identification is GNU 4.8.5
  3. -- The CXX compiler identification is GNU 4.8.5
  4. -- Check for working C compiler: /usr/bin/cc
  5. -- Check for working C compiler: /usr/bin/cc -- works
  6. -- Detecting C compiler ABI info
  7. -- Detecting C compiler ABI info - done
  8. -- Detecting C compile features
  9. -- Detecting C compile features - done
  10. -- Check for working CXX compiler: /usr/bin/c++
  11. -- Check for working CXX compiler: /usr/bin/c++ -- works
  12. -- Detecting CXX compiler ABI info
  13. -- Detecting CXX compiler ABI info - done
  14. -- Detecting CXX compile features
  15. -- Detecting CXX compile features - done
  16. -- Could NOT find CCache (missing: CCACHE)
  17. -- Found SWIG: /home/noddy/swig_installation/bin/swig (found suitable version "3.0.11", minimum required is "2.0.4")
  18. -- Performing Test _HAS_CXX11_FLAG
  19. -- Performing Test _HAS_CXX11_FLAG - Success
  20. -- Checking C++11 support for "__func__"
  21. -- Checking C++11 support for "__func__": works
  22. -- Checking C++11 support for "atomic"
  23. -- Checking C++11 support for "atomic": works
  24. -- Checking C++11 support for "auto"
  25. -- Checking C++11 support for "auto": works
  26. -- Checking C++11 support for "auto_ret_type"
  27. -- Checking C++11 support for "auto_ret_type": works
  28. -- Checking C++11 support for "class_override_final"
  29. -- Checking C++11 support for "class_override_final": not supported
  30. -- Checking C++11 support for "constexpr"
  31. -- Checking C++11 support for "constexpr": works
  32. -- Checking C++11 support for "cstdint"
  33. -- Checking C++11 support for "cstdint": works
  34. -- Checking C++11 support for "decltype"
  35. -- Checking C++11 support for "decltype": works
  36. -- Checking C++11 support for "initializer_list"
  37. -- Checking C++11 support for "initializer_list": works
  38. -- Checking C++11 support for "lambda"
  39. -- Checking C++11 support for "lambda": works
  40. -- Checking C++11 support for "long_long"
  41. -- Checking C++11 support for "long_long": works
  42. -- Checking C++11 support for "nullptr"
  43. -- Checking C++11 support for "nullptr": works
  44. -- Checking C++11 support for "regex"
  45. -- Checking C++11 support for "regex": not supported
  46. -- Checking C++11 support for "rvalue-references"
  47. -- Checking C++11 support for "rvalue-references": works
  48. -- Checking C++11 support for "sizeof_member"
  49. -- Checking C++11 support for "sizeof_member": works
  50. -- Checking C++11 support for "static_assert"
  51. -- Checking C++11 support for "static_assert": works
  52. -- Checking C++11 support for "variadic_templates"
  53. -- Checking C++11 support for "variadic_templates": works
  54. -- Looking for C++ include unordered_map
  55. -- Looking for C++ include unordered_map - found
  56. -- Using system's malloc
  57. -- Looking for isfinite
  58. -- Looking for isfinite - not found
  59. -- Looking for isinf
  60. -- Looking for isinf - found
  61. -- Looking for isnan
  62. -- Looking for isnan - found
  63. -- Looking for signgam
  64. -- Looking for signgam - found
  65. -- Looking for fdopen
  66. -- Looking for fdopen - found
  67. -- Looking for log2
  68. -- Looking for log2 - found
  69. -- Looking for powl
  70. -- Looking for powl - found
  71. -- Looking for lgammal
  72. -- Looking for lgammal - found
  73. -- Looking for sqrtl
  74. -- Looking for sqrtl - found
  75. -- Looking for finite
  76. -- Looking for finite - found
  77. -- Looking for isfinite
  78. -- Looking for isfinite - not found
  79. -- Looking for isinf
  80. -- Looking for isinf - found
  81. -- Looking for isnan
  82. -- Looking for isnan - found
  83. -- Performing Test HAVE_STD_ISINF
  84. -- Performing Test HAVE_STD_ISINF - Success
  85. -- Performing Test HAVE_STD_ISFINITE
  86. -- Performing Test HAVE_STD_ISFINITE - Success
  87. -- Performing Test HAVE_STD_ISNAN
  88. -- Performing Test HAVE_STD_ISNAN - Success
  89. -- Looking for xmmintrin.h
  90. -- Looking for xmmintrin.h - found
  91. -- Looking for emmintrin.h
  92. -- Looking for emmintrin.h - found
  93. -- Looking for arc4random
  94. -- Looking for arc4random - not found
  95. -- Found GDB: /usr/bin/gdb
  96. -- Could NOT find MOSEK (missing: MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY)
  97. -- Looking for pthread.h
  98. -- Looking for pthread.h - found
  99. -- Looking for pthread_create
  100. -- Looking for pthread_create - not found
  101. -- Looking for pthread_create in pthreads
  102. -- Looking for pthread_create in pthreads - not found
  103. -- Looking for pthread_create in pthread
  104. -- Looking for pthread_create in pthread - found
  105. -- Found Threads: TRUE
  106. -- Try OpenMP C flag = [-fopenmp]
  107. -- Performing Test OpenMP_FLAG_DETECTED
  108. -- Performing Test OpenMP_FLAG_DETECTED - Success
  109. -- Try OpenMP CXX flag = [-fopenmp]
  110. -- Performing Test OpenMP_FLAG_DETECTED
  111. -- Performing Test OpenMP_FLAG_DETECTED - Success
  112. -- Found OpenMP: -fopenmp
  113. -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1")
  114. -- Looking for sgemm_
  115. -- Looking for sgemm_ - found
  116. -- A library with BLAS API found.
  117. -- Looking for cheev_
  118. -- Looking for cheev_ - found
  119. -- A library with LAPACK API found.
  120. -- Could NOT find Atlas (missing: Atlas_CBLAS_INCLUDE_DIR Atlas_CLAPACK_INCLUDE_DIR Atlas_CBLAS_LIBRARY Atlas_BLAS_LIBRARY Atlas_LAPACK_LIBRARY)
  121. -- Could NOT find CBLAS (missing: CBLAS_LIBRARY)
  122. -- Could NOT find GLPK (missing: GLPK_LIBRARY GLPK_INCLUDE_DIR GLPK_PROPER_VERSION_FOUND)
  123. -- Could NOT find CPLEX (missing: CPLEX_LIBRARY CPLEX_INCLUDE_DIR)
  124. -- Could NOT find Eigen3 (missing: EIGEN_INCLUDE_DIR) (Required is at least version "3.1.2")
  125. -- Could NOT find OPENCL (missing: OPENCL_INCLUDE_DIR)
  126. -- Could NOT find ViennaCL (missing: VIENNACL_INCLUDE_DIR VIENNACL_ENCODED_VERSION OPENCL_INCLUDE_DIRS OPENCL_LIBRARIES) (Required is at least version "1.5.0")
  127. -- Checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9'
  128. -- Could NOT find NLOPT (missing: NLOPT_LIBRARY NLOPT_INCLUDE_DIR)
  129. -- Could NOT find LPSOLVE (missing: LPSOLVE_INCLUDE_DIR)
  130. -- Could NOT find ColPack (missing: COLPACK_LIBRARIES COLPACK_LIBRARY_DIR COLPACK_INCLUDE_DIR)
  131. -- Could NOT find Doxygen: Found unsuitable version "1.8.5", but required is at least "1.8.6" (found /usr/bin/doxygen)
  132. -- Found PythonInterp: /home/noddy/anaconda2/bin/python (found version "2.7.12")
  133. -- Ctags flavour: Exuberant
  134. -- Found Ctags: /usr/bin/ctags (found version "exuberant ctags 5.8")
  135. -- Found Sphinx: /home/noddy/anaconda2/bin/sphinx-build
  136. -- Failed to locate pandoc executable (missing: PANDOC_EXECUTABLE)
  137. -- Checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11'
  138. -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARIES LIBXML2_INCLUDE_DIR)
  139. -- HDF5: Using hdf5 compiler wrapper to determine C configuration
  140. -- Found HDF5: /home/noddy/anaconda2/lib/libhdf5.so;/usr/lib64/librt.so;/usr/lib64/libpthread.so;/home/noddy/zlib_installation/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.8.17")
  141. -- Could NOT find CURL (missing: CURL_LIBRARY CURL_INCLUDE_DIR)
  142. -- Could NOT find ZLIB (missing: ZLIB_INCLUDE_DIR)
  143. -- Could NOT find BZip2 (missing: BZIP2_LIBRARIES BZIP2_INCLUDE_DIR)
  144. -- Could NOT find LibLZMA (missing: LIBLZMA_INCLUDE_DIR LIBLZMA_LIBRARY LIBLZMA_HAS_AUTO_DECODER LIBLZMA_HAS_EASY_ENCODER LIBLZMA_HAS_LZMA_PRESET)
  145. -- Could NOT find SNAPPY (missing: SNAPPY_LIBRARIES SNAPPY_INCLUDE_DIR)
  146. -- Lzo includes and libraries NOT found.
  147. -- Spinlock support found
  148. -- Could NOT find Protobuf (missing: Protobuf_INCLUDE_DIR)
  149. -- Eigen3 set as default global linear algebra backend library
  150. -- Eigen3 set as default core module (linalg) backend library
  151. -- Eigen3 set as default reduction module (linalg) backend library
  152. -- Eigen3 set as default eigen solver module (linalg) backend library
  153. CMake Error at /home/noddy/cmake_installation/share/cmake-3.7/Modules/FindPackageHandleStandardArgs.cmake:138 (message):
  154. Could NOT find PythonLibs (missing: PYTHON_LIBRARIES PYTHON_INCLUDE_DIRS)
  155. (Required is exact version "2.7.12")
  156. Call Stack (most recent call first):
  157. /home/noddy/cmake_installation/share/cmake-3.7/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE)
  158. cmake/FindPythonLibs.cmake:190 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  159. CMakeLists.txt:977 (FIND_PACKAGE)
  160.  
  161.  
  162. -- Configuring incomplete, errors occurred!
  163. See also "/home/noddy/shogun/build/CMakeFiles/CMakeOutput.log".
  164. See also "/home/noddy/shogun/build/CMakeFiles/CMakeError.log".
  165. [noddy@ymmtlab-k80 build]$
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