TESTING (All copies are WLR packed configs into into MODGEN configs)
Copied all main config files .cfg into modgenned modpack. (NO CRAFTING LAG)
Copied folders AM2-Forestry (NO CRAFTING LAG)
Copied folders GravestoneMod-mystcraft (CRAFTING LAG!!!!)
Reverted back to Gravestonemod-mystcraft mod generated configs.
Copied NEI-worldedit (No crafting lag)
Copied mariculture-mystcraft (No Crafting Lag)
Copied Hungeroverhail-Inpureprojects. (Crafting lag)
Reveryed Hungeroverhaul-inpure back to mod generated
Copied Gravestonemod-hqm (No crafting lag)
Copied hungeroverhaul-iquanatinkertweaks (CRAFTING LAG)
Reverted back to MODGEN hungeroverhaul-iquanatweaks (no crafting lag)
Copied INPUREPROJECTS (No crafting lag)
Copied Iquanatweaks (crafting lag)
Revert iquanatweaks added hungeroverhaul (no crafting lag)
Added in IQT main.cfg,modules.cfg only. (Crafting LAG!)
Reverted  modules.cfg only. (CRAFTING LAG!)
Put WLR iquanatweaks folder in reverting the following changes to default: (NO CRAFTING LAG!)

    # Allows to craft tool parts with a pattern and the material in any crafting grid. [default: false]
    B:easyPartCrafting=false

    # Allows to create Tool Station Tools (2-3 Parts) in any crafting grid [default: false]
    B:easyToolBuilding=false

    # Allows to also create Tool Forge Tools (4 Parts) in any crafting grid [default: false]
    B:easyToolBuildingForge=false

    # Allows to repair your tool in a crafting grid, without tool station [default: true]
    B:easyToolRepair=false

Downloaded MAYHEM WLR Fresh. Editted the above configs on SMP. Rebooted server (CRAFTING LAG)
Editted local main.cfg tested SSP. (No Crafting lag)
Connected to MAYHEM SANCTUM SMP (No crafting Lag)