Here you go

import csv
que = 0 #So here I am setting 4 variables, the question-number, the answer-number, the hint-number and the score
anw = 0
hnt = 0
score = 0
print("Welcome, to the Data Challenge!")
print("You will be asked a series of questions.")
print("All correct answers will give you 2 points, while all incorrect answers will take off 1 point")
print("The test is case sensitive, so add capital letters where appropriate (begginning of words)")
print("If you need help, type 'Hint' as your answer, and a tip will come up")
print("However, this will cost you 1 point")
print()
print("Remember, this test is Case Sensitive, so do not miss out on those captials.")
print()
begin = str(input("Are you ready to begin? (Y/N)  "))
print()
if begin == "Y":
    print("Lets do this!")
    qes = True #the variable qes here is just used for a while loop
    while qes:
        qs = [] #so here I am creating a list for all of the questions
        with open("questions.txt", mode="r",encoding="utf-8") as question:
            reader = csv.reader(question)
            for row in reader:
                qs.append(row)
        uno = qs[que] #return of the 'que' variable. this bit of code makes it so that the variable uno is set to the 'que' position in the list
        print(uno) #for example, if que = 3, then it would read the 4th line of the list (lists start at 0)
        ans = [] #another list creation just here
        with open("answers.txt", mode="r",encoding="utf-8") as answer:
            reader = csv.reader(answer)
            for row in reader:
                ans.append(row)
        dos = ans[anw] #same basic logic as above here
        print(dos)
        ans1 = input()
        if ans1 == dos: #this is where everything goes wrong, it does not accept my 'ans1' input as being the same as the line from the list
            print("You are right!")
            score = score + 2
            print("Your score is ", score)
            que = que +1 #if you get the question right, then all of the variables go up 1
            anw = anw +1 #meaning that the position in the list rises by 1
            hnt = (hnt)+1 #and everything repeats, thanks to the while loop.
            qes = True #since all the variables have changed, now there will be different questions, answers and hints shown
        else:
            if (ans1) == "Hint":
                score = (score)-1
                hin = []
                with open("hints.txt", mode="r",encoding="utf-8") as hints:
                    reader = csv.reader(hints)
                    for row in reader:
                        hin.append(row)
                print(hin[hnt])
                qes = True
            else:
                print("That is incorrect. Let's start from the beginning.")
                que = 0
                anw = 0
                hnt = 0
                score = (score)-1
                qes = True
else:
    print("Alright then. See you next time.")
    exit()